data_U37 # _chem_comp.id U37 _chem_comp.name ;URIDINE 5'-MONOTHIOPHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O8 P S" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1998-01-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces T31 _chem_comp.formula_weight 340.247 _chem_comp.one_letter_code U _chem_comp.three_letter_code U37 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U37 O3P O3P O 0 1 N Y N -17.473 -0.023 40.257 -1.801 -1.186 -3.353 O3P U37 1 U37 P P P 0 1 N N R -17.503 -0.815 39.014 -1.167 0.095 -3.734 P U37 2 U37 S S S 0 1 N N N -16.187 -0.503 37.765 0.336 -0.263 -5.184 S U37 3 U37 O1P O1P O 0 1 N N N -17.450 -2.371 39.405 -2.281 1.082 -4.350 O1P U37 4 U37 "O5'" O5* O 0 1 N N N -18.939 -0.667 38.352 -0.507 0.776 -2.433 "O5'" U37 5 U37 "C5'" C5* C 0 1 N N N -19.952 -1.658 38.603 0.467 -0.142 -1.936 "C5'" U37 6 U37 "C4'" C4* C 0 1 N N R -21.275 -1.000 38.886 1.136 0.446 -0.693 "C4'" U37 7 U37 "O4'" O4* O 0 1 N N N -21.727 -1.380 40.214 0.157 0.662 0.350 "O4'" U37 8 U37 "C3'" C3* C 0 1 N N S -21.264 0.514 38.938 2.140 -0.558 -0.086 "C3'" U37 9 U37 "O3'" O3* O 0 1 N N N -21.313 1.150 37.682 3.471 -0.249 -0.502 "O3'" U37 10 U37 "C2'" C2* C 0 1 N N R -22.485 0.827 39.787 1.991 -0.368 1.439 "C2'" U37 11 U37 "O2'" O2* O 0 1 N N N -23.697 0.746 39.054 3.228 0.061 2.012 "O2'" U37 12 U37 "C1'" C1* C 0 1 N N R -22.419 -0.294 40.816 0.916 0.731 1.577 "C1'" U37 13 U37 N1 N1 N 0 1 N N N -21.668 0.140 42.004 0.052 0.458 2.729 N1 U37 14 U37 C2 C2 C 0 1 N N N -22.377 0.415 43.171 -0.660 -0.681 2.772 C2 U37 15 U37 O2 O2 O 0 1 N N N -23.599 0.332 43.248 -0.576 -1.475 1.855 O2 U37 16 U37 N3 N3 N 0 1 N N N -21.600 0.801 44.241 -1.457 -0.959 3.820 N3 U37 17 U37 C4 C4 C 0 1 N N N -20.222 0.945 44.262 -1.562 -0.088 4.844 C4 U37 18 U37 O4 O4 O 0 1 N N N -19.662 1.290 45.303 -2.287 -0.337 5.791 O4 U37 19 U37 C5 C5 C 0 1 N N N -19.574 0.658 43.021 -0.821 1.117 4.809 C5 U37 20 U37 C6 C6 C 0 1 N N N -20.299 0.272 41.963 -0.025 1.368 3.748 C6 U37 21 U37 HS HS H 0 1 N N N -16.206 -1.013 36.964 0.771 0.993 -5.386 HS U37 22 U37 H1P H1P H 0 1 N N N -17.469 -2.881 38.604 -2.651 0.638 -5.125 H1P U37 23 U37 "H5'1" 1H5* H 0 0 N N N -19.654 -2.358 39.419 1.220 -0.323 -2.703 "H5'1" U37 24 U37 "H5'2" 2H5* H 0 0 N N N -20.026 -2.395 37.770 -0.019 -1.082 -1.676 "H5'2" U37 25 U37 "H4'" H4* H 0 1 N N N -22.023 -1.337 38.131 1.639 1.380 -0.940 "H4'" U37 26 U37 "H3'" H3* H 0 1 N N N -20.350 0.851 39.480 1.879 -1.578 -0.371 "H3'" U37 27 U37 HA HA H 0 1 N N N -21.306 2.099 37.715 4.055 -0.888 -0.071 HA U37 28 U37 "H2'" H2* H 0 1 N N N -22.383 1.823 40.278 1.655 -1.292 1.908 "H2'" U37 29 U37 HB HB H 0 1 N N N -24.460 0.942 39.585 3.873 -0.637 1.842 HB U37 30 U37 "H1'" H1* H 0 1 N N N -23.448 -0.609 41.107 1.384 1.710 1.679 "H1'" U37 31 U37 H3 H3 H 0 1 N N N -22.092 1.003 45.111 -1.962 -1.788 3.837 H3 U37 32 U37 H5 H5 H 0 1 N N N -18.479 0.754 42.935 -0.892 1.826 5.621 H5 U37 33 U37 H6 H6 H 0 1 N N N -19.776 0.050 41.018 0.547 2.282 3.704 H6 U37 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U37 O3P P DOUB N N 1 U37 P S SING N N 2 U37 P O1P SING N N 3 U37 P "O5'" SING N N 4 U37 S HS SING N N 5 U37 O1P H1P SING N N 6 U37 "O5'" "C5'" SING N N 7 U37 "C5'" "C4'" SING N N 8 U37 "C5'" "H5'1" SING N N 9 U37 "C5'" "H5'2" SING N N 10 U37 "C4'" "O4'" SING N N 11 U37 "C4'" "C3'" SING N N 12 U37 "C4'" "H4'" SING N N 13 U37 "O4'" "C1'" SING N N 14 U37 "C3'" "O3'" SING N N 15 U37 "C3'" "C2'" SING N N 16 U37 "C3'" "H3'" SING N N 17 U37 "O3'" HA SING N N 18 U37 "C2'" "O2'" SING N N 19 U37 "C2'" "C1'" SING N N 20 U37 "C2'" "H2'" SING N N 21 U37 "O2'" HB SING N N 22 U37 "C1'" N1 SING N N 23 U37 "C1'" "H1'" SING N N 24 U37 N1 C2 SING N N 25 U37 N1 C6 SING N N 26 U37 C2 O2 DOUB N N 27 U37 C2 N3 SING N N 28 U37 N3 C4 SING N N 29 U37 N3 H3 SING N N 30 U37 C4 O4 DOUB N N 31 U37 C4 C5 SING N N 32 U37 C5 C6 DOUB N N 33 U37 C5 H5 SING N N 34 U37 C6 H6 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U37 SMILES ACDLabs 10.04 "O=P(O)(S)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O" U37 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@@](O)(S)=O)N2C=CC(=O)NC2=O" U37 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(S)=O)N2C=CC(=O)NC2=O" U37 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)S)O)O" U37 SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)S)O)O" U37 InChI InChI 1.03 "InChI=1S/C9H13N2O8PS/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(19-8)3-18-20(16,17)21/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,21)/t4-,6-,7-,8-/m1/s1" U37 InChIKey InChI 1.03 NSEBKRRODBXALJ-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U37 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-thiophosphonouridine" U37 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-sulfanyl-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U37 "Create component" 1998-01-07 RCSB U37 "Modify descriptor" 2011-06-04 RCSB #