data_UBE # _chem_comp.id UBE _chem_comp.name "3-({3-[(2S)-2-amino-2-carboxyethyl]-5-methyl-2,6-dioxo-3,6-dihydropyrimidin-1(2H)-yl}methyl)-5-phenylthiophene-2-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H19 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-09-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.446 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UBE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2QS3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UBE O24 O24 O 0 1 N N N -1.201 -7.002 14.016 -2.943 -3.441 -1.398 O24 UBE 1 UBE C22 C22 C 0 1 N N N -1.508 -7.668 15.032 -3.571 -2.402 -1.330 C22 UBE 2 UBE O23 O23 O 0 1 N N N -1.492 -8.914 15.081 -4.856 -2.363 -1.742 O23 UBE 3 UBE C21 C21 C 0 1 Y N N -1.897 -6.936 16.259 -2.937 -1.197 -0.796 C21 UBE 4 UBE S20 S20 S 0 1 Y N N -1.584 -7.579 17.813 -3.673 0.399 -0.749 S20 UBE 5 UBE C19 C19 C 0 1 Y N N -2.297 -6.205 18.614 -2.237 1.079 0.004 C19 UBE 6 UBE C25 C25 C 0 1 Y N N -2.294 -6.197 20.099 -2.068 2.495 0.391 C25 UBE 7 UBE C30 C30 C 0 1 Y N N -1.738 -5.084 20.736 -3.096 3.411 0.164 C30 UBE 8 UBE C29 C29 C 0 1 Y N N -1.709 -5.022 22.131 -2.932 4.732 0.527 C29 UBE 9 UBE C28 C28 C 0 1 Y N N -2.246 -6.078 22.869 -1.751 5.149 1.115 C28 UBE 10 UBE C27 C27 C 0 1 Y N N -2.803 -7.188 22.230 -0.728 4.246 1.344 C27 UBE 11 UBE C26 C26 C 0 1 Y N N -2.831 -7.248 20.835 -0.882 2.921 0.991 C26 UBE 12 UBE C18 C18 C 0 1 Y N N -2.768 -5.256 17.710 -1.302 0.100 0.178 C18 UBE 13 UBE C17 C17 C 0 1 Y N N -2.571 -5.626 16.378 -1.683 -1.141 -0.252 C17 UBE 14 UBE C16 C16 C 0 1 N N N -2.963 -4.838 15.186 -0.791 -2.351 -0.140 C16 UBE 15 UBE N3 N3 N 0 1 N N N -4.115 -3.991 15.449 0.461 -1.974 0.519 N3 UBE 16 UBE C4 C4 C 0 1 N N N -5.421 -4.503 15.597 1.510 -1.565 -0.218 C4 UBE 17 UBE O15 O15 O 0 1 N N N -5.645 -5.731 15.542 1.408 -1.512 -1.429 O15 UBE 18 UBE C2 C2 C 0 1 N N N -3.887 -2.612 15.517 0.557 -2.033 1.863 C2 UBE 19 UBE O14 O14 O 0 1 N N N -2.737 -2.155 15.377 -0.393 -2.399 2.531 O14 UBE 20 UBE C1 C1 C 0 1 N N N -5.044 -1.713 15.743 1.773 -1.667 2.489 C1 UBE 21 UBE C13 C13 C 0 1 N N N -4.838 -0.222 15.827 1.906 -1.724 3.989 C13 UBE 22 UBE C6 C6 C 0 1 N N N -6.304 -2.280 15.884 2.811 -1.265 1.725 C6 UBE 23 UBE N5 N5 N 0 1 N N N -6.500 -3.608 15.812 2.671 -1.214 0.365 N5 UBE 24 UBE C7 C7 C 0 1 N N N -7.861 -4.144 15.945 3.795 -0.772 -0.464 C7 UBE 25 UBE C8 C8 C 0 1 N N S -8.333 -4.540 14.529 3.724 0.744 -0.654 C8 UBE 26 UBE N9 N9 N 0 1 N N N -8.095 -3.472 13.563 2.412 1.108 -1.205 N9 UBE 27 UBE C10 C10 C 0 1 N N N -9.785 -4.908 14.526 4.808 1.182 -1.605 C10 UBE 28 UBE O11 O11 O 0 1 N N N -10.555 -4.279 13.758 4.542 1.401 -2.764 O11 UBE 29 UBE O12 O12 O 0 1 N N N -10.181 -5.838 15.268 6.068 1.330 -1.166 O12 UBE 30 UBE HO23 HO23 H 0 0 N N N -1.215 -9.261 14.241 -5.188 -3.208 -2.075 HO23 UBE 31 UBE H30 H30 H 0 1 N N N -1.331 -4.273 20.150 -4.018 3.087 -0.296 H30 UBE 32 UBE H29 H29 H 0 1 N N N -1.277 -4.168 22.632 -3.727 5.442 0.352 H29 UBE 33 UBE H28 H28 H 0 1 N N N -2.231 -6.036 23.948 -1.628 6.184 1.398 H28 UBE 34 UBE H27 H27 H 0 1 N N N -3.212 -7.999 22.814 0.191 4.578 1.803 H27 UBE 35 UBE H26 H26 H 0 1 N N N -3.265 -8.101 20.333 -0.084 2.216 1.173 H26 UBE 36 UBE H18 H18 H 0 1 N N N -3.237 -4.330 18.008 -0.337 0.289 0.625 H18 UBE 37 UBE H161 1H16 H 0 0 N N N -3.216 -5.533 14.372 -1.294 -3.119 0.447 H161 UBE 38 UBE H162 2H16 H 0 0 N N N -2.118 -4.190 14.912 -0.576 -2.737 -1.137 H162 UBE 39 UBE H131 1H13 H 0 0 N N N -4.788 0.083 16.883 0.969 -2.070 4.425 H131 UBE 40 UBE H132 2H13 H 0 0 N N N -3.898 0.047 15.323 2.707 -2.414 4.257 H132 UBE 41 UBE H133 3H13 H 0 0 N N N -5.678 0.292 15.337 2.139 -0.731 4.372 H133 UBE 42 UBE H6 H6 H 0 1 N N N -7.152 -1.634 16.057 3.746 -0.981 2.185 H6 UBE 43 UBE H71 1H7 H 0 1 N N N -8.531 -3.382 16.371 4.733 -1.034 0.026 H71 UBE 44 UBE H72 2H7 H 0 1 N N N -7.874 -5.014 16.619 3.744 -1.263 -1.436 H72 UBE 45 UBE H8 H8 H 0 1 N N N -7.741 -5.418 14.230 3.864 1.238 0.308 H8 UBE 46 UBE HN91 1HN9 H 0 0 N N N -8.041 -2.595 14.041 2.259 0.663 -2.097 HN91 UBE 47 UBE HN92 2HN9 H 0 0 N N N -7.235 -3.643 13.082 1.673 0.883 -0.557 HN92 UBE 48 UBE HO12 HO12 H 0 0 N N N -11.114 -5.966 15.145 6.728 1.613 -1.813 HO12 UBE 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UBE N9 C8 SING N N 1 UBE O11 C10 DOUB N N 2 UBE O24 C22 DOUB N N 3 UBE C10 C8 SING N N 4 UBE C10 O12 SING N N 5 UBE C8 C7 SING N N 6 UBE C22 O23 SING N N 7 UBE C22 C21 SING N N 8 UBE C16 N3 SING N N 9 UBE C16 C17 SING N N 10 UBE O14 C2 DOUB N N 11 UBE N3 C2 SING N N 12 UBE N3 C4 SING N N 13 UBE C2 C1 SING N N 14 UBE O15 C4 DOUB N N 15 UBE C4 N5 SING N N 16 UBE C1 C13 SING N N 17 UBE C1 C6 DOUB N N 18 UBE N5 C6 SING N N 19 UBE N5 C7 SING N N 20 UBE C21 C17 DOUB Y N 21 UBE C21 S20 SING Y N 22 UBE C17 C18 SING Y N 23 UBE C18 C19 DOUB Y N 24 UBE S20 C19 SING Y N 25 UBE C19 C25 SING Y N 26 UBE C25 C30 DOUB Y N 27 UBE C25 C26 SING Y N 28 UBE C30 C29 SING Y N 29 UBE C26 C27 DOUB Y N 30 UBE C29 C28 DOUB Y N 31 UBE C27 C28 SING Y N 32 UBE O23 HO23 SING N N 33 UBE C30 H30 SING N N 34 UBE C29 H29 SING N N 35 UBE C28 H28 SING N N 36 UBE C27 H27 SING N N 37 UBE C26 H26 SING N N 38 UBE C18 H18 SING N N 39 UBE C16 H161 SING N N 40 UBE C16 H162 SING N N 41 UBE C13 H131 SING N N 42 UBE C13 H132 SING N N 43 UBE C13 H133 SING N N 44 UBE C6 H6 SING N N 45 UBE C7 H71 SING N N 46 UBE C7 H72 SING N N 47 UBE C8 H8 SING N N 48 UBE N9 HN91 SING N N 49 UBE N9 HN92 SING N N 50 UBE O12 HO12 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UBE SMILES ACDLabs 10.04 "O=C(O)c1sc(cc1CN2C(=O)C(=CN(C2=O)CC(C(=O)O)N)C)c3ccccc3" UBE SMILES_CANONICAL CACTVS 3.341 "CC1=CN(C[C@H](N)C(O)=O)C(=O)N(Cc2cc(sc2C(O)=O)c3ccccc3)C1=O" UBE SMILES CACTVS 3.341 "CC1=CN(C[CH](N)C(O)=O)C(=O)N(Cc2cc(sc2C(O)=O)c3ccccc3)C1=O" UBE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)N(C1=O)Cc2cc(sc2C(=O)O)c3ccccc3)C[C@@H](C(=O)O)N" UBE SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)N(C1=O)Cc2cc(sc2C(=O)O)c3ccccc3)CC(C(=O)O)N" UBE InChI InChI 1.03 "InChI=1S/C20H19N3O6S/c1-11-8-22(10-14(21)18(25)26)20(29)23(17(11)24)9-13-7-15(30-16(13)19(27)28)12-5-3-2-4-6-12/h2-8,14H,9-10,21H2,1H3,(H,25,26)(H,27,28)/t14-/m0/s1" UBE InChIKey InChI 1.03 LCZDCKMQSBGXAH-AWEZNQCLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UBE "SYSTEMATIC NAME" ACDLabs 10.04 "3-({3-[(2S)-2-amino-2-carboxyethyl]-5-methyl-2,6-dioxo-3,6-dihydropyrimidin-1(2H)-yl}methyl)-5-phenylthiophene-2-carboxylic acid" UBE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[3-[(2S)-2-amino-3-hydroxy-3-oxo-propyl]-5-methyl-2,6-dioxo-pyrimidin-1-yl]methyl]-5-phenyl-thiophene-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UBE "Create component" 2007-09-11 RCSB UBE "Modify aromatic_flag" 2011-06-04 RCSB UBE "Modify descriptor" 2011-06-04 RCSB #