data_UDL
#
_chem_comp.id UDL
_chem_comp.name "(2~{S},3~{R})-2-acetamido-4-methyl-3-oxidanyl-pentanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H15 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-04
_chem_comp.pdbx_modified_date 2025-03-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 189.209
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UDL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8QEH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UDL C7 C1 C 0 1 N N N N N N -43.776 -1.351 -9.924 2.573 2.281 -0.879 C7 UDL 1
UDL C1 C2 C 0 1 N N N N N N -40.066 -3.661 -7.680 -2.018 0.944 0.052 C1 UDL 2
UDL C5 C3 C 0 1 N N N N N N -40.727 0.096 -6.952 0.743 -1.704 0.167 C5 UDL 3
UDL C6 C4 C 0 1 N N N N N N -43.121 -1.212 -8.573 1.875 1.258 -0.020 C6 UDL 4
UDL C4 C5 C 0 1 N N S N N N -41.091 -1.337 -7.301 0.091 -0.359 0.358 C4 UDL 5
UDL C3 C6 C 0 1 N N N N N N -41.164 -4.271 -6.819 -3.462 0.879 -0.450 C3 UDL 6
UDL O3 O1 O 0 1 N N N N N N -43.753 -0.936 -7.552 2.308 0.994 1.082 O3 UDL 7
UDL C2 C7 C 0 1 N N N N N N -38.775 -4.458 -7.585 -2.006 1.410 1.509 C2 UDL 8
UDL N N1 N 0 1 N N N N N N -41.804 -1.366 -8.553 0.770 0.636 -0.477 N UDL 9
UDL O2 O2 O 0 1 N N N N N N -40.901 1.098 -7.613 1.679 -1.820 -0.589 O2 UDL 10
UDL C C8 C 0 1 N N R N N N -39.827 -2.198 -7.314 -1.382 -0.444 -0.046 C UDL 11
UDL O O3 O 0 1 N N N N N N -38.929 -1.639 -8.276 -1.481 -0.920 -1.389 O UDL 12
UDL O1 O4 O 0 1 N N N N N N -39.496 -0.068 -6.356 0.285 -2.773 0.836 O1 UDL 13
UDL H14 H1 H 0 1 N N N N N N -44.857 -1.170 -9.828 3.439 2.673 -0.346 H14 UDL 14
UDL H13 H2 H 0 1 N N N N N N -43.342 -0.617 -10.619 2.899 1.814 -1.808 H13 UDL 15
UDL H12 H3 H 0 1 N N N N N N -43.607 -2.367 -10.310 1.885 3.096 -1.104 H12 UDL 16
UDL H3 H4 H 0 1 N N N N N N -40.404 -3.693 -8.726 -1.452 1.647 -0.559 H3 UDL 17
UDL H1 H5 H 0 1 N N N N N N -41.750 -1.721 -6.508 0.165 -0.065 1.405 H1 UDL 18
UDL H9 H6 H 0 1 N N N N N N -41.313 -5.323 -7.105 -3.891 1.881 -0.452 H9 UDL 19
UDL H8 H7 H 0 1 N N N N N N -40.872 -4.217 -5.760 -3.477 0.476 -1.463 H8 UDL 20
UDL H7 H8 H 0 1 N N N N N N -42.100 -3.714 -6.970 -4.047 0.235 0.206 H7 UDL 21
UDL H6 H9 H 0 1 N N N N N N -38.971 -5.507 -7.852 -0.977 1.456 1.867 H6 UDL 22
UDL H5 H10 H 0 1 N N N N N N -38.032 -4.036 -8.277 -2.459 2.399 1.579 H5 UDL 23
UDL H4 H11 H 0 1 N N N N N N -38.388 -4.408 -6.556 -2.572 0.707 2.120 H4 UDL 24
UDL H11 H12 H 0 1 N N N N N N -41.305 -1.503 -9.409 0.424 0.846 -1.358 H11 UDL 25
UDL H H13 H 0 1 N N N N N N -39.371 -2.160 -6.314 -1.903 -1.130 0.622 H UDL 26
UDL H2 H14 H 0 1 N N N N N N -38.767 -0.727 -8.066 -1.039 -0.357 -2.040 H2 UDL 27
UDL H10 H15 H 0 1 N N N N N N -38.940 0.673 -6.567 0.735 -3.615 0.681 H10 UDL 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UDL O C SING N N 1
UDL C1 C SING N N 2
UDL C2 C1 SING N N 3
UDL C3 C1 SING N N 4
UDL C C4 SING N N 5
UDL C5 C4 SING N N 6
UDL O1 C5 SING N N 7
UDL O2 C5 DOUB N N 8
UDL C4 N SING N N 9
UDL N C6 SING N N 10
UDL C7 C6 SING N N 11
UDL C6 O3 DOUB N N 12
UDL C7 H14 SING N N 13
UDL C7 H13 SING N N 14
UDL C7 H12 SING N N 15
UDL C1 H3 SING N N 16
UDL C4 H1 SING N N 17
UDL C3 H9 SING N N 18
UDL C3 H8 SING N N 19
UDL C3 H7 SING N N 20
UDL C2 H6 SING N N 21
UDL C2 H5 SING N N 22
UDL C2 H4 SING N N 23
UDL N H11 SING N N 24
UDL C H SING N N 25
UDL O H2 SING N N 26
UDL O1 H10 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UDL InChI InChI 1.06 "InChI=1S/C8H15NO4/c1-4(2)7(11)6(8(12)13)9-5(3)10/h4,6-7,11H,1-3H3,(H,9,10)(H,12,13)/t6-,7+/m0/s1"
UDL InChIKey InChI 1.06 GIDOPHKISCKMBN-NKWVEPMBSA-N
UDL SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@H](O)[C@H](NC(C)=O)C(O)=O"
UDL SMILES CACTVS 3.385 "CC(C)[CH](O)[CH](NC(C)=O)C(O)=O"
UDL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H]([C@@H](C(=O)O)NC(=O)C)O"
UDL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(C(=O)O)NC(=O)C)O"
#
_pdbx_chem_comp_identifier.comp_id UDL
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-2-acetamido-4-methyl-3-oxidanyl-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UDL "Create component" 2023-09-04 PDBE
UDL "Initial release" 2025-03-19 RCSB
#