data_UE5 # _chem_comp.id UE5 _chem_comp.name "(R)-N-((1-(6-(benzylamino)pyrimidin-4-yl)-3-hydroxypiperidin-3-yl)methyl)-4-((4,4-dimethylpiperidin-1-yl)methyl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H42 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[(4,4-dimethylpiperidin-1-yl)methyl]-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-11 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 542.715 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UE5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NHV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UE5 C10 C1 C 0 1 Y N N 45.458 -31.336 23.261 -4.016 -0.621 -2.067 C10 UE5 1 UE5 C13 C2 C 0 1 Y N N 44.631 -31.691 24.308 -3.259 -1.296 -1.109 C13 UE5 2 UE5 C17 C3 C 0 1 N N R 44.254 -35.817 26.501 0.949 -3.068 0.624 C17 UE5 3 UE5 C20 C4 C 0 1 N N N 43.324 -37.531 24.135 2.737 -1.084 1.745 C20 UE5 4 UE5 C21 C5 C 0 1 N N N 42.782 -35.963 26.101 2.471 -3.140 0.489 C21 UE5 5 UE5 C01 C6 C 0 1 N N N 44.477 -24.203 22.365 -9.822 3.202 -0.518 C01 UE5 6 UE5 C02 C7 C 0 1 N N N 43.180 -24.955 22.700 -8.909 3.048 0.700 C02 UE5 7 UE5 C03 C8 C 0 1 N N N 42.302 -24.128 23.621 -9.040 4.281 1.596 C03 UE5 8 UE5 C04 C9 C 0 1 N N N 43.529 -26.176 23.496 -7.457 2.904 0.236 C04 UE5 9 UE5 C05 C10 C 0 1 N N N 43.896 -27.314 22.608 -7.320 1.637 -0.610 C05 UE5 10 UE5 C07 C11 C 0 1 N N N 43.215 -28.866 21.290 -7.467 -0.779 -0.548 C07 UE5 11 UE5 C08 C12 C 0 1 Y N N 43.704 -29.882 22.385 -5.983 -0.958 -0.744 C08 UE5 12 UE5 C09 C13 C 0 1 Y N N 45.003 -30.438 22.293 -5.373 -0.456 -1.879 C09 UE5 13 UE5 C11 C14 C 0 1 Y N N 42.880 -30.291 23.429 -5.240 -1.638 0.205 C11 UE5 14 UE5 C12 C15 C 0 1 Y N N 43.340 -31.182 24.393 -3.882 -1.805 0.032 C12 UE5 15 UE5 C14 C16 C 0 1 N N N 45.060 -32.708 25.369 -1.804 -1.472 -1.301 C14 UE5 16 UE5 C16 C17 C 0 1 N N N 44.482 -34.395 27.114 0.366 -2.299 -0.564 C16 UE5 17 UE5 C18 C18 C 0 1 N N N 45.080 -35.988 25.232 0.590 -2.345 1.925 C18 UE5 18 UE5 C19 C19 C 0 1 N N N 44.823 -37.383 24.580 1.222 -0.951 1.917 C19 UE5 19 UE5 C23 C20 C 0 1 Y N N 41.495 -38.157 25.714 4.392 -1.804 0.233 C23 UE5 20 UE5 C25 C21 C 0 1 Y N N 40.108 -39.038 27.382 6.319 -2.990 -0.205 C25 UE5 21 UE5 C27 C22 C 0 1 Y N N 40.128 -40.030 25.248 6.483 -0.695 -0.087 C27 UE5 22 UE5 C29 C23 C 0 1 N N N 40.164 -41.249 23.001 6.627 1.767 0.046 C29 UE5 23 UE5 C30 C24 C 0 1 Y N N 41.366 -42.216 22.819 7.671 2.847 -0.079 C30 UE5 24 UE5 C31 C25 C 0 1 Y N N 42.080 -42.729 23.918 7.930 3.418 -1.311 C31 UE5 25 UE5 C32 C26 C 0 1 Y N N 43.170 -43.595 23.689 8.888 4.407 -1.427 C32 UE5 26 UE5 C33 C27 C 0 1 Y N N 43.540 -43.944 22.376 9.587 4.826 -0.310 C33 UE5 27 UE5 C34 C28 C 0 1 Y N N 42.830 -43.430 21.277 9.328 4.255 0.922 C34 UE5 28 UE5 C35 C29 C 0 1 Y N N 41.743 -42.570 21.501 8.366 3.269 1.038 C35 UE5 29 UE5 C36 C30 C 0 1 Y N N 41.060 -39.108 24.810 5.119 -0.619 0.174 C36 UE5 30 UE5 C39 C31 C 0 1 N N N 42.836 -26.733 20.816 -9.121 0.562 0.603 C39 UE5 31 UE5 C40 C32 C 0 1 N N N 42.477 -25.305 21.376 -9.312 1.798 1.486 C40 UE5 32 UE5 N06 N1 N 0 1 N N N 42.956 -27.658 21.798 -7.716 0.469 0.186 N06 UE5 33 UE5 N15 N2 N 0 1 N N N 44.005 -33.415 26.116 -1.076 -2.125 -0.374 N15 UE5 34 UE5 N22 N3 N 0 1 N N N 42.484 -37.165 25.271 3.029 -1.782 0.484 N22 UE5 35 UE5 N24 N4 N 0 1 Y N N 41.037 -38.113 26.969 5.024 -2.960 0.040 N24 UE5 36 UE5 N26 N5 N 0 1 Y N N 39.662 -39.991 26.512 7.041 -1.890 -0.269 N26 UE5 37 UE5 N28 N6 N 0 1 N N N 39.647 -41.071 24.351 7.251 0.458 -0.156 N28 UE5 38 UE5 O37 O1 O 0 1 N N N 44.645 -36.732 27.496 0.408 -4.390 0.648 O37 UE5 39 UE5 O38 O2 O 0 1 N N N 46.205 -32.982 25.582 -1.264 -1.028 -2.296 O38 UE5 40 UE5 H1 H1 H 0 1 N N N 46.453 -31.751 23.191 -3.540 -0.224 -2.952 H1 UE5 41 UE5 H2 H2 H 0 1 N N N 43.118 -36.862 23.286 3.188 -0.092 1.724 H2 UE5 42 UE5 H3 H3 H 0 1 N N N 43.122 -38.571 23.840 3.148 -1.653 2.578 H3 UE5 43 UE5 H4 H4 H 0 1 N N N 42.491 -35.070 25.529 2.884 -3.700 1.328 H4 UE5 44 UE5 H5 H5 H 0 1 N N N 42.180 -36.022 27.020 2.730 -3.642 -0.444 H5 UE5 45 UE5 H6 H6 H 0 1 N N N 45.000 -23.940 23.296 -9.730 2.322 -1.155 H6 UE5 46 UE5 H7 H7 H 0 1 N N N 45.124 -24.845 21.749 -10.855 3.305 -0.187 H7 UE5 47 UE5 H8 H8 H 0 1 N N N 44.235 -23.285 21.809 -9.531 4.090 -1.080 H8 UE5 48 UE5 H9 H9 H 0 1 N N N 42.850 -23.906 24.549 -10.074 4.382 1.928 H9 UE5 49 UE5 H10 H10 H 0 1 N N N 42.031 -23.186 23.121 -8.389 4.171 2.464 H10 UE5 50 UE5 H11 H11 H 0 1 N N N 41.388 -24.692 23.860 -8.750 5.170 1.036 H11 UE5 51 UE5 H12 H12 H 0 1 N N N 42.662 -26.464 24.108 -7.178 3.773 -0.360 H12 UE5 52 UE5 H13 H13 H 0 1 N N N 44.381 -25.944 24.152 -6.803 2.834 1.106 H13 UE5 53 UE5 H14 H14 H 0 1 N N N 44.147 -28.180 23.238 -7.964 1.714 -1.487 H14 UE5 54 UE5 H15 H15 H 0 1 N N N 44.777 -27.024 22.016 -6.284 1.524 -0.930 H15 UE5 55 UE5 H16 H16 H 0 1 N N N 42.298 -29.259 20.827 -7.959 -0.733 -1.519 H16 UE5 56 UE5 H17 H17 H 0 1 N N N 43.999 -28.767 20.524 -7.862 -1.620 0.021 H17 UE5 57 UE5 H18 H18 H 0 1 N N N 45.646 -30.166 21.469 -5.960 0.067 -2.620 H18 UE5 58 UE5 H19 H19 H 0 1 N N N 41.871 -29.912 23.492 -5.725 -2.039 1.083 H19 UE5 59 UE5 H20 H20 H 0 1 N N N 42.695 -31.478 25.207 -3.302 -2.329 0.777 H20 UE5 60 UE5 H21 H21 H 0 1 N N N 45.552 -34.238 27.317 0.844 -1.322 -0.634 H21 UE5 61 UE5 H22 H22 H 0 1 N N N 43.912 -34.290 28.049 0.547 -2.859 -1.482 H22 UE5 62 UE5 H23 H23 H 0 1 N N N 46.147 -35.900 25.483 -0.494 -2.253 2.004 H23 UE5 63 UE5 H24 H24 H 0 1 N N N 44.805 -35.200 24.515 0.970 -2.913 2.774 H24 UE5 64 UE5 H25 H25 H 0 1 N N N 45.060 -38.170 25.311 1.006 -0.447 2.859 H25 UE5 65 UE5 H26 H26 H 0 1 N N N 45.472 -37.493 23.699 0.812 -0.370 1.091 H26 UE5 66 UE5 H27 H27 H 0 1 N N N 39.731 -39.011 28.394 6.802 -3.944 -0.357 H27 UE5 67 UE5 H28 H28 H 0 1 N N N 40.477 -40.260 22.634 6.180 1.808 1.040 H28 UE5 68 UE5 H29 H29 H 0 1 N N N 39.339 -41.627 22.379 5.853 1.921 -0.706 H29 UE5 69 UE5 H30 H30 H 0 1 N N N 41.797 -42.463 24.926 7.383 3.091 -2.184 H30 UE5 70 UE5 H31 H31 H 0 1 N N N 43.724 -43.993 24.526 9.090 4.853 -2.389 H31 UE5 71 UE5 H32 H32 H 0 1 N N N 44.374 -44.610 22.212 10.336 5.599 -0.400 H32 UE5 72 UE5 H33 H33 H 0 1 N N N 43.118 -43.694 20.270 9.872 4.585 1.795 H33 UE5 73 UE5 H34 H34 H 0 1 N N N 41.190 -42.175 20.661 8.164 2.823 2.001 H34 UE5 74 UE5 H35 H35 H 0 1 N N N 41.435 -39.130 23.797 4.636 0.335 0.326 H35 UE5 75 UE5 H36 H36 H 0 1 N N N 42.041 -27.052 20.126 -9.394 -0.331 1.165 H36 UE5 76 UE5 H37 H37 H 0 1 N N N 43.790 -26.669 20.272 -9.757 0.645 -0.279 H37 UE5 77 UE5 H38 H38 H 0 1 N N N 42.765 -24.556 20.623 -8.687 1.709 2.375 H38 UE5 78 UE5 H39 H39 H 0 1 N N N 41.390 -25.261 21.540 -10.358 1.875 1.783 H39 UE5 79 UE5 H41 H41 H 0 1 N N N 43.033 -33.243 25.958 -1.506 -2.479 0.420 H41 UE5 80 UE5 H42 H42 H 0 1 N N N 38.664 -40.919 24.253 8.202 0.397 -0.338 H42 UE5 81 UE5 H43 H43 H 0 1 N N N 44.114 -36.602 28.273 -0.555 -4.420 0.733 H43 UE5 82 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UE5 C39 C40 SING N N 1 UE5 C39 N06 SING N N 2 UE5 C34 C35 DOUB Y N 3 UE5 C34 C33 SING Y N 4 UE5 C07 N06 SING N N 5 UE5 C07 C08 SING N N 6 UE5 C40 C02 SING N N 7 UE5 C35 C30 SING Y N 8 UE5 N06 C05 SING N N 9 UE5 C09 C08 DOUB Y N 10 UE5 C09 C10 SING Y N 11 UE5 C01 C02 SING N N 12 UE5 C33 C32 DOUB Y N 13 UE5 C08 C11 SING Y N 14 UE5 C05 C04 SING N N 15 UE5 C02 C04 SING N N 16 UE5 C02 C03 SING N N 17 UE5 C30 C29 SING N N 18 UE5 C30 C31 DOUB Y N 19 UE5 C29 N28 SING N N 20 UE5 C10 C13 DOUB Y N 21 UE5 C11 C12 DOUB Y N 22 UE5 C32 C31 SING Y N 23 UE5 C20 C19 SING N N 24 UE5 C20 N22 SING N N 25 UE5 C13 C12 SING Y N 26 UE5 C13 C14 SING N N 27 UE5 N28 C27 SING N N 28 UE5 C19 C18 SING N N 29 UE5 C36 C27 DOUB Y N 30 UE5 C36 C23 SING Y N 31 UE5 C18 C17 SING N N 32 UE5 C27 N26 SING Y N 33 UE5 N22 C23 SING N N 34 UE5 N22 C21 SING N N 35 UE5 C14 O38 DOUB N N 36 UE5 C14 N15 SING N N 37 UE5 C23 N24 DOUB Y N 38 UE5 C21 C17 SING N N 39 UE5 N15 C16 SING N N 40 UE5 C17 C16 SING N N 41 UE5 C17 O37 SING N N 42 UE5 N26 C25 DOUB Y N 43 UE5 N24 C25 SING Y N 44 UE5 C10 H1 SING N N 45 UE5 C20 H2 SING N N 46 UE5 C20 H3 SING N N 47 UE5 C21 H4 SING N N 48 UE5 C21 H5 SING N N 49 UE5 C01 H6 SING N N 50 UE5 C01 H7 SING N N 51 UE5 C01 H8 SING N N 52 UE5 C03 H9 SING N N 53 UE5 C03 H10 SING N N 54 UE5 C03 H11 SING N N 55 UE5 C04 H12 SING N N 56 UE5 C04 H13 SING N N 57 UE5 C05 H14 SING N N 58 UE5 C05 H15 SING N N 59 UE5 C07 H16 SING N N 60 UE5 C07 H17 SING N N 61 UE5 C09 H18 SING N N 62 UE5 C11 H19 SING N N 63 UE5 C12 H20 SING N N 64 UE5 C16 H21 SING N N 65 UE5 C16 H22 SING N N 66 UE5 C18 H23 SING N N 67 UE5 C18 H24 SING N N 68 UE5 C19 H25 SING N N 69 UE5 C19 H26 SING N N 70 UE5 C25 H27 SING N N 71 UE5 C29 H28 SING N N 72 UE5 C29 H29 SING N N 73 UE5 C31 H30 SING N N 74 UE5 C32 H31 SING N N 75 UE5 C33 H32 SING N N 76 UE5 C34 H33 SING N N 77 UE5 C35 H34 SING N N 78 UE5 C36 H35 SING N N 79 UE5 C39 H36 SING N N 80 UE5 C39 H37 SING N N 81 UE5 C40 H38 SING N N 82 UE5 C40 H39 SING N N 83 UE5 N15 H41 SING N N 84 UE5 N28 H42 SING N N 85 UE5 O37 H43 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UE5 InChI InChI 1.03 "InChI=1S/C32H42N6O2/c1-31(2)14-17-37(18-15-31)21-26-9-11-27(12-10-26)30(39)34-22-32(40)13-6-16-38(23-32)29-19-28(35-24-36-29)33-20-25-7-4-3-5-8-25/h3-5,7-12,19,24,40H,6,13-18,20-23H2,1-2H3,(H,34,39)(H,33,35,36)/t32-/m1/s1" UE5 InChIKey InChI 1.03 UMNYWWVELYOOIU-JGCGQSQUSA-N UE5 SMILES_CANONICAL CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(cc2)C(=O)NC[C@]3(O)CCCN(C3)c4cc(NCc5ccccc5)ncn4" UE5 SMILES CACTVS 3.385 "CC1(C)CCN(CC1)Cc2ccc(cc2)C(=O)NC[C]3(O)CCCN(C3)c4cc(NCc5ccccc5)ncn4" UE5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(cc2)C(=O)NC[C@@]3(CCCN(C3)c4cc(ncn4)NCc5ccccc5)O)C" UE5 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)Cc2ccc(cc2)C(=O)NCC3(CCCN(C3)c4cc(ncn4)NCc5ccccc5)O)C" # _pdbx_chem_comp_identifier.comp_id UE5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(4,4-dimethylpiperidin-1-yl)methyl]-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id UE5 _pdbx_chem_comp_synonyms.name "4-[(4,4-dimethylpiperidin-1-yl)methyl]-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UE5 "Create component" 2021-02-11 PDBE UE5 "Initial release" 2021-10-20 RCSB ##