data_UEQ # _chem_comp.id UEQ _chem_comp.name "4-[[(3R)-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-N-[[(3R)-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H42 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-[[(3~{R})-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-11 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.736 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UEQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NIA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UEQ C10 C1 C 0 1 N N N -43.145 28.148 21.094 6.887 -0.065 0.172 C10 UEQ 1 UEQ C13 C2 C 0 1 N N N -41.464 26.008 20.378 9.293 -0.074 -1.041 C13 UEQ 2 UEQ C15 C3 C 0 1 N N N -40.354 25.015 19.996 10.738 -0.032 -1.542 C15 UEQ 3 UEQ C17 C4 C 0 1 N N N -43.466 24.163 22.357 9.212 1.707 1.317 C17 UEQ 4 UEQ C20 C5 C 0 1 N N N -43.877 26.463 22.229 7.050 2.346 -0.105 C20 UEQ 5 UEQ C21 C6 C 0 1 Y N N -43.352 29.436 23.369 4.823 0.403 1.508 C21 UEQ 6 UEQ C22 C7 C 0 1 Y N N -43.760 30.565 24.305 3.484 0.212 1.779 C22 UEQ 7 UEQ C24 C8 C 0 1 N N N -45.203 36.064 25.679 -1.141 -2.483 -1.605 C24 UEQ 8 UEQ C26 C9 C 0 1 N N N -43.826 37.573 24.209 -3.350 -1.319 -1.579 C26 UEQ 9 UEQ C02 C10 C 0 1 N N R -44.003 35.578 26.343 -1.417 -2.956 -0.175 C02 UEQ 10 UEQ C03 C11 C 0 1 N N N -44.244 34.087 26.813 -0.841 -1.944 0.817 C03 UEQ 11 UEQ C05 C12 C 0 1 N N N -44.852 32.818 24.703 1.301 -0.882 1.287 C05 UEQ 12 UEQ C06 C13 C 0 1 Y N N -44.475 31.751 23.673 2.736 -0.673 1.002 C06 UEQ 13 UEQ C07 C14 C 0 1 Y N N -44.793 31.808 22.158 3.349 -1.361 -0.047 C07 UEQ 14 UEQ C08 C15 C 0 1 Y N N -44.364 30.633 21.237 4.689 -1.161 -0.308 C08 UEQ 15 UEQ C09 C16 C 0 1 Y N N -43.628 29.428 21.855 5.424 -0.278 0.463 C09 UEQ 16 UEQ C12 C17 C 0 1 N N R -41.935 26.434 21.797 8.457 1.199 -1.189 C12 UEQ 17 UEQ C14 C18 C 0 1 N N N -40.244 26.486 19.579 9.679 -0.817 -2.321 C14 UEQ 18 UEQ C16 C19 C 0 1 N N N -42.795 25.543 22.450 8.563 2.149 0.006 C16 UEQ 19 UEQ C18 C20 C 0 1 N N N -42.495 23.683 23.452 9.601 3.182 1.520 C18 UEQ 20 UEQ C19 C21 C 0 1 N N N -42.200 25.141 23.809 9.521 3.339 -0.010 C19 UEQ 21 UEQ C25 C22 C 0 1 N N N -45.096 37.392 25.065 -1.851 -1.147 -1.838 C25 UEQ 22 UEQ C27 C23 C 0 1 N N N -42.755 35.673 25.441 -2.928 -3.076 0.035 C27 UEQ 23 UEQ C29 C24 C 0 1 Y N N -41.646 38.093 25.578 -4.911 -1.812 0.110 C29 UEQ 24 UEQ C31 C25 C 0 1 Y N N -40.283 38.940 27.566 -6.752 -2.984 0.850 C31 UEQ 25 UEQ C33 C26 C 0 1 Y N N -40.159 40.165 25.298 -7.051 -0.767 0.300 C33 UEQ 26 UEQ C35 C27 C 0 1 N N N -40.153 41.559 23.105 -7.338 1.612 -0.298 C35 UEQ 27 UEQ C36 C28 C 0 1 Y N N -41.553 42.240 23.092 -8.438 2.642 -0.338 C36 UEQ 28 UEQ C37 C29 C 0 1 Y N N -42.121 42.916 24.355 -8.689 3.428 0.771 C37 UEQ 29 UEQ C38 C30 C 0 1 Y N N -43.504 43.577 24.320 -9.698 4.373 0.734 C38 UEQ 30 UEQ C39 C31 C 0 1 Y N N -44.329 43.555 23.024 -10.455 4.531 -0.411 C39 UEQ 31 UEQ C40 C32 C 0 1 Y N N -43.764 42.873 21.770 -10.204 3.745 -1.520 C40 UEQ 32 UEQ C41 C33 C 0 1 Y N N -42.376 42.221 21.797 -9.191 2.804 -1.485 C41 UEQ 33 UEQ C42 C34 C 0 1 Y N N -41.121 39.194 24.703 -5.702 -0.675 -0.029 C42 UEQ 34 UEQ N04 N1 N 0 1 N N N -43.881 33.096 25.776 0.581 -1.738 0.535 N04 UEQ 35 UEQ N11 N2 N 0 1 N N N -42.935 27.457 21.947 7.039 1.033 -0.793 N11 UEQ 36 UEQ N28 N3 N 0 1 N N N -42.580 37.127 24.973 -3.561 -1.772 -0.198 N28 UEQ 37 UEQ N30 N4 N 0 1 Y N N -41.234 37.970 26.977 -5.470 -2.938 0.550 N30 UEQ 38 UEQ N32 N5 N 0 1 Y N N -39.752 40.032 26.700 -7.534 -1.930 0.732 N32 UEQ 39 UEQ N34 N6 N 0 1 N N N -39.630 41.268 24.465 -7.880 0.337 0.179 N34 UEQ 40 UEQ O01 O1 O 0 1 N N N -43.730 36.275 27.542 -0.803 -4.230 0.032 O01 UEQ 41 UEQ O23 O2 O 0 1 N N N -45.928 33.342 24.646 0.769 -0.281 2.201 O23 UEQ 42 UEQ H1 H1 H 0 1 N N N -43.931 27.749 20.436 7.408 0.188 1.095 H1 UEQ 43 UEQ H2 H2 H 0 1 N N N -42.239 28.347 20.504 7.311 -0.978 -0.247 H2 UEQ 44 UEQ H3 H3 H 0 1 N N N -42.332 25.885 19.713 9.085 -0.673 -0.155 H3 UEQ 45 UEQ H4 H4 H 0 1 N N N -40.545 24.241 19.238 11.093 0.902 -1.977 H4 UEQ 46 UEQ H5 H5 H 0 1 N N N -39.686 24.612 20.771 11.480 -0.604 -0.986 H5 UEQ 47 UEQ H6 H6 H 0 1 N N N -44.527 24.149 22.648 8.499 1.336 2.054 H6 UEQ 48 UEQ H7 H7 H 0 1 N N N -43.346 23.660 21.386 10.066 1.044 1.180 H7 UEQ 49 UEQ H8 H8 H 0 1 N N N -44.493 26.661 23.118 6.534 2.344 0.855 H8 UEQ 50 UEQ H9 H9 H 0 1 N N N -44.529 26.202 21.382 6.760 3.181 -0.743 H9 UEQ 51 UEQ H10 H10 H 0 1 N N N -42.837 28.587 23.794 5.403 1.088 2.108 H10 UEQ 52 UEQ H11 H11 H 0 1 N N N -43.553 30.527 25.364 3.016 0.747 2.592 H11 UEQ 53 UEQ H12 H12 H 0 1 N N N -46.011 36.100 26.425 -0.068 -2.355 -1.746 H12 UEQ 54 UEQ H13 H13 H 0 1 N N N -45.466 35.346 24.888 -1.516 -3.224 -2.312 H13 UEQ 55 UEQ H14 H14 H 0 1 N N N -43.722 38.635 23.940 -3.856 -0.365 -1.730 H14 UEQ 56 UEQ H15 H15 H 0 1 N N N -43.921 36.971 23.293 -3.755 -2.058 -2.270 H15 UEQ 57 UEQ H16 H16 H 0 1 N N N -45.309 33.964 27.060 -1.372 -0.997 0.720 H16 UEQ 58 UEQ H17 H17 H 0 1 N N N -43.635 33.898 27.709 -0.959 -2.324 1.832 H17 UEQ 59 UEQ H18 H18 H 0 1 N N N -45.311 32.661 21.744 2.776 -2.048 -0.652 H18 UEQ 60 UEQ H19 H19 H 0 1 N N N -44.578 30.660 20.179 5.164 -1.690 -1.121 H19 UEQ 61 UEQ H20 H20 H 0 1 N N N -41.053 26.661 22.414 8.590 1.686 -2.154 H20 UEQ 62 UEQ H21 H21 H 0 1 N N N -39.496 27.138 20.055 9.726 -1.906 -2.277 H21 UEQ 63 UEQ H22 H22 H 0 1 N N N -40.356 26.767 18.521 9.339 -0.400 -3.269 H22 UEQ 64 UEQ H23 H23 H 0 1 N N N -42.973 23.109 24.259 8.850 3.761 2.057 H23 UEQ 65 UEQ H24 H24 H 0 1 N N N -41.626 23.127 23.072 10.606 3.317 1.920 H24 UEQ 66 UEQ H25 H25 H 0 1 N N N -41.132 25.375 23.926 10.463 3.136 -0.520 H25 UEQ 67 UEQ H26 H26 H 0 1 N N N -42.756 25.519 24.680 9.056 4.271 -0.330 H26 UEQ 68 UEQ H27 H27 H 0 1 N N N -45.087 38.146 25.866 -1.448 -0.397 -1.157 H27 UEQ 69 UEQ H28 H28 H 0 1 N N N -45.975 37.550 24.422 -1.694 -0.826 -2.868 H28 UEQ 70 UEQ H29 H29 H 0 1 N N N -42.882 35.018 24.567 -3.335 -3.807 -0.663 H29 UEQ 71 UEQ H30 H30 H 0 1 N N N -41.866 35.359 26.008 -3.128 -3.399 1.057 H30 UEQ 72 UEQ H31 H31 H 0 1 N N N -39.981 38.859 28.600 -7.175 -3.913 1.204 H31 UEQ 73 UEQ H32 H32 H 0 1 N N N -40.226 40.610 22.553 -6.927 1.480 -1.299 H32 UEQ 74 UEQ H33 H33 H 0 1 N N N -39.441 42.225 22.597 -6.551 1.947 0.377 H33 UEQ 75 UEQ H34 H34 H 0 1 N N N -41.543 42.924 25.267 -8.097 3.305 1.666 H34 UEQ 76 UEQ H35 H35 H 0 1 N N N -43.897 44.057 25.204 -9.894 4.987 1.601 H35 UEQ 77 UEQ H36 H36 H 0 1 N N N -45.304 44.018 22.995 -11.244 5.268 -0.439 H36 UEQ 78 UEQ H37 H37 H 0 1 N N N -44.348 42.852 20.862 -10.793 3.871 -2.416 H37 UEQ 79 UEQ H38 H38 H 0 1 N N N -41.980 41.751 20.909 -8.995 2.190 -2.352 H38 UEQ 80 UEQ H39 H39 H 0 1 N N N -41.431 39.280 23.672 -5.279 0.254 -0.382 H39 UEQ 81 UEQ H40 H40 H 0 1 N N N -42.998 32.626 25.803 1.005 -2.217 -0.194 H40 UEQ 82 UEQ H42 H42 H 0 1 N N N -38.652 41.089 24.355 -8.820 0.266 0.410 H42 UEQ 83 UEQ H43 H43 H 0 1 N N N -44.487 36.230 28.114 0.156 -4.229 -0.088 H43 UEQ 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UEQ C14 C15 SING N N 1 UEQ C14 C13 SING N N 2 UEQ C15 C13 SING N N 3 UEQ C13 C12 SING N N 4 UEQ C10 C09 SING N N 5 UEQ C10 N11 SING N N 6 UEQ C08 C09 DOUB Y N 7 UEQ C08 C07 SING Y N 8 UEQ C40 C41 DOUB Y N 9 UEQ C40 C39 SING Y N 10 UEQ C12 N11 SING N N 11 UEQ C12 C16 SING N N 12 UEQ C41 C36 SING Y N 13 UEQ C09 C21 SING Y N 14 UEQ N11 C20 SING N N 15 UEQ C07 C06 DOUB Y N 16 UEQ C20 C16 SING N N 17 UEQ C17 C16 SING N N 18 UEQ C17 C18 SING N N 19 UEQ C16 C19 SING N N 20 UEQ C39 C38 DOUB Y N 21 UEQ C36 C35 SING N N 22 UEQ C36 C37 DOUB Y N 23 UEQ C35 N34 SING N N 24 UEQ C21 C22 DOUB Y N 25 UEQ C18 C19 SING N N 26 UEQ C06 C22 SING Y N 27 UEQ C06 C05 SING N N 28 UEQ C26 N28 SING N N 29 UEQ C26 C25 SING N N 30 UEQ C38 C37 SING Y N 31 UEQ N34 C33 SING N N 32 UEQ O23 C05 DOUB N N 33 UEQ C05 N04 SING N N 34 UEQ C42 C33 DOUB Y N 35 UEQ C42 C29 SING Y N 36 UEQ N28 C27 SING N N 37 UEQ N28 C29 SING N N 38 UEQ C25 C24 SING N N 39 UEQ C33 N32 SING Y N 40 UEQ C27 C02 SING N N 41 UEQ C29 N30 DOUB Y N 42 UEQ C24 C02 SING N N 43 UEQ N04 C03 SING N N 44 UEQ C02 C03 SING N N 45 UEQ C02 O01 SING N N 46 UEQ N32 C31 DOUB Y N 47 UEQ N30 C31 SING Y N 48 UEQ C10 H1 SING N N 49 UEQ C10 H2 SING N N 50 UEQ C13 H3 SING N N 51 UEQ C15 H4 SING N N 52 UEQ C15 H5 SING N N 53 UEQ C17 H6 SING N N 54 UEQ C17 H7 SING N N 55 UEQ C20 H8 SING N N 56 UEQ C20 H9 SING N N 57 UEQ C21 H10 SING N N 58 UEQ C22 H11 SING N N 59 UEQ C24 H12 SING N N 60 UEQ C24 H13 SING N N 61 UEQ C26 H14 SING N N 62 UEQ C26 H15 SING N N 63 UEQ C03 H16 SING N N 64 UEQ C03 H17 SING N N 65 UEQ C07 H18 SING N N 66 UEQ C08 H19 SING N N 67 UEQ C12 H20 SING N N 68 UEQ C14 H21 SING N N 69 UEQ C14 H22 SING N N 70 UEQ C18 H23 SING N N 71 UEQ C18 H24 SING N N 72 UEQ C19 H25 SING N N 73 UEQ C19 H26 SING N N 74 UEQ C25 H27 SING N N 75 UEQ C25 H28 SING N N 76 UEQ C27 H29 SING N N 77 UEQ C27 H30 SING N N 78 UEQ C31 H31 SING N N 79 UEQ C35 H32 SING N N 80 UEQ C35 H33 SING N N 81 UEQ C37 H34 SING N N 82 UEQ C38 H35 SING N N 83 UEQ C39 H36 SING N N 84 UEQ C40 H37 SING N N 85 UEQ C41 H38 SING N N 86 UEQ C42 H39 SING N N 87 UEQ N04 H40 SING N N 88 UEQ N34 H42 SING N N 89 UEQ O01 H43 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UEQ InChI InChI 1.03 "InChI=1S/C34H42N6O2/c41-32(28-10-8-26(9-11-28)20-40-22-33(14-4-15-33)31(40)27-12-13-27)36-21-34(42)16-5-17-39(23-34)30-18-29(37-24-38-30)35-19-25-6-2-1-3-7-25/h1-3,6-11,18,24,27,31,42H,4-5,12-17,19-23H2,(H,36,41)(H,35,37,38)/t31-,34-/m1/s1" UEQ InChIKey InChI 1.03 OWDBESCKAVDZRB-QIKUIUABSA-N UEQ SMILES_CANONICAL CACTVS 3.385 "O[C@]1(CCCN(C1)c2cc(NCc3ccccc3)ncn2)CNC(=O)c4ccc(CN5CC6(CCC6)[C@H]5C7CC7)cc4" UEQ SMILES CACTVS 3.385 "O[C]1(CCCN(C1)c2cc(NCc3ccccc3)ncn2)CNC(=O)c4ccc(CN5CC6(CCC6)[CH]5C7CC7)cc4" UEQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2cc(ncn2)N3CCC[C@](C3)(CNC(=O)c4ccc(cc4)CN5CC6([C@H]5C7CC7)CCC6)O" UEQ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2cc(ncn2)N3CCCC(C3)(CNC(=O)c4ccc(cc4)CN5CC6(C5C7CC7)CCC6)O" # _pdbx_chem_comp_identifier.comp_id UEQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(3~{R})-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UEQ "Create component" 2021-02-11 PDBE UEQ "Initial release" 2021-10-20 RCSB ##