data_UFG # _chem_comp.id UFG _chem_comp.name "URIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 F N2 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.293 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UFG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UDB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UFG N1 N1 N 0 1 N N N 15.883 15.315 39.892 0.915 -0.659 5.752 N1 UFG 1 UFG C2 C2 C 0 1 N N N 15.640 16.615 40.337 1.586 0.430 5.336 C2 UFG 2 UFG N3 N3 N 0 1 N N N 16.763 17.380 40.555 2.861 0.643 5.713 N3 UFG 3 UFG C4 C4 C 0 1 N N N 18.084 16.953 40.329 3.491 -0.243 6.509 C4 UFG 4 UFG C5 C5 C 0 1 N N N 18.250 15.604 39.884 2.799 -1.396 6.950 C5 UFG 5 UFG C6 C6 C 0 1 N N N 17.190 14.846 39.694 1.519 -1.583 6.561 C6 UFG 6 UFG O2 O2 O 0 1 N N N 14.529 17.061 40.501 1.030 1.238 4.618 O2 UFG 7 UFG O4 O4 O 0 1 N N N 18.970 17.745 40.527 4.646 -0.053 6.846 O4 UFG 8 UFG C1D C1* C 0 1 N N R 14.750 14.364 39.679 -0.472 -0.861 5.330 C1D UFG 9 UFG C2D C2* C 0 1 N N R 14.612 13.891 38.243 -1.346 0.359 5.714 C2D UFG 10 UFG O2D O2* O 0 1 N N N 13.770 14.798 37.504 -1.837 0.234 7.050 O2D UFG 11 UFG C3D C3* C 0 1 N N S 13.934 12.504 38.365 -2.506 0.263 4.688 C3D UFG 12 UFG C4D C4* C 0 1 N N R 14.511 11.994 39.667 -1.927 -0.596 3.548 C4D UFG 13 UFG "O4'" O4* O 0 1 N N N 14.944 13.169 40.400 -0.565 -0.903 3.890 "O4'" UFG 14 UFG O3D O3* O 0 1 N N N 12.508 12.609 38.445 -3.643 -0.372 5.276 O3D UFG 15 UFG C5D C5* C 0 1 N N N 15.720 11.113 39.550 -1.970 0.185 2.234 C5D UFG 16 UFG O5D O5* O 0 1 N N N 16.606 11.813 38.658 -1.425 -0.617 1.184 O5D UFG 17 UFG PA PA P 0 1 N N R 18.070 11.214 38.406 -1.501 0.262 -0.161 PA UFG 18 UFG O1A O1A O 0 1 N N N 18.796 12.065 37.436 -2.912 0.609 -0.444 O1A UFG 19 UFG O2A O2A O 0 1 N N N 18.755 10.860 39.671 -0.644 1.611 0.029 O2A UFG 20 UFG O3A O3A O 0 1 N N N 17.898 9.787 37.629 -0.900 -0.585 -1.391 O3A UFG 21 UFG PB PB P 0 1 N N S 17.062 9.397 36.380 -1.007 0.349 -2.697 PB UFG 22 UFG O1B O1B O 0 1 N N N 15.710 8.814 36.666 -2.425 0.695 -2.941 O1B UFG 23 UFG O2B O2B O 0 1 N N N 17.019 10.547 35.423 -0.159 1.697 -2.463 O2B UFG 24 UFG O3B O3B O 0 1 N N N 17.920 8.246 35.638 -0.420 -0.439 -3.972 O3B UFG 25 UFG "C1'" "C1'" C 0 1 N N R 17.281 7.375 34.740 -0.543 0.437 -5.093 "C1'" UFG 26 UFG "C2'" "C2'" C 0 1 N N R 18.188 6.155 34.707 -0.742 -0.389 -6.365 "C2'" UFG 27 UFG "C3'" "C3'" C 0 1 N N R 19.399 6.253 33.746 0.454 -1.331 -6.541 "C3'" UFG 28 UFG "C4'" "C4'" C 0 1 N N S 19.102 6.982 32.425 1.741 -0.499 -6.498 "C4'" UFG 29 UFG "C5'" "C5'" C 0 1 N N R 18.157 8.190 32.574 1.753 0.335 -5.215 "C5'" UFG 30 UFG "C6'" "C6'" C 0 1 N N N 17.581 8.691 31.244 3.051 1.142 -5.145 "C6'" UFG 31 UFG "O2'" "O2'" O 0 1 N N N 18.567 5.724 36.021 -1.943 -1.156 -6.254 "O2'" UFG 32 UFG "O3'" "O3'" O 0 1 N N N 20.038 5.002 33.492 0.356 -2.002 -7.798 "O3'" UFG 33 UFG "O5'" "O5'" O 0 1 N N N 17.023 7.891 33.415 0.639 1.226 -5.209 "O5'" UFG 34 UFG "O6'" "O6'" O 0 1 N N N 16.672 7.725 30.773 3.064 1.919 -3.946 "O6'" UFG 35 UFG "F4'" "F4'" F 0 1 N N N 20.313 7.440 31.830 2.850 -1.351 -6.512 "F4'" UFG 36 UFG HN3 HN3 H 0 1 N N N 16.606 18.324 40.906 3.329 1.436 5.407 HN3 UFG 37 UFG H5 H5 H 0 1 N N N 19.226 15.133 39.680 3.288 -2.118 7.588 H5 UFG 38 UFG H6 H6 H 0 1 N N N 17.397 13.813 39.367 0.975 -2.457 6.887 H6 UFG 39 UFG H1D H1* H 0 1 N N N 13.855 14.945 40.003 -0.875 -1.775 5.767 H1D UFG 40 UFG H2D H2* H 0 1 N N N 15.588 13.843 37.706 -0.791 1.289 5.590 H2D UFG 41 UFG "HO2'" *HO2 H 0 0 N N N 13.683 14.502 36.605 -2.371 1.022 7.226 "HO2'" UFG 42 UFG H3D H3* H 0 1 N N N 14.119 11.842 37.487 -2.773 1.254 4.320 H3D UFG 43 UFG H4D H4* H 0 1 N N N 13.714 11.377 40.144 -2.501 -1.517 3.451 H4D UFG 44 UFG "HO3'" *HO3 H 0 0 N N N 12.092 11.758 38.519 -3.921 0.181 6.018 "HO3'" UFG 45 UFG "H5'1" 1H5* H 0 0 N N N 16.182 10.847 40.529 -1.384 1.098 2.334 "H5'1" UFG 46 UFG "H5'2" 2H5* H 0 0 N N N 15.489 10.069 39.230 -3.003 0.440 1.996 "H5'2" UFG 47 UFG HOA2 2HOA H 0 0 N N N 19.623 10.504 39.521 0.265 1.341 0.212 HOA2 UFG 48 UFG HOB2 2HOB H 0 0 N N N 16.507 10.308 34.658 0.756 1.428 -2.308 HOB2 UFG 49 UFG "H1'" "H1'" H 0 1 N N N 16.244 7.167 35.095 -1.402 1.092 -4.948 "H1'" UFG 50 UFG "H2'" "H2'" H 0 1 N N N 17.552 5.356 34.257 -0.812 0.275 -7.225 "H2'" UFG 51 UFG "H3'" "H3'" H 0 1 N N N 20.118 6.888 34.314 0.465 -2.064 -5.734 "H3'" UFG 52 UFG "H4'" "H4'" H 0 1 N N N 18.589 6.228 31.782 1.778 0.160 -7.364 "H4'" UFG 53 UFG "H5'" "H5'" H 0 1 N N N 18.805 8.976 33.025 1.692 -0.327 -4.352 "H5'" UFG 54 UFG "H6'1" "1H6'" H 0 0 N N N 17.127 9.706 31.325 3.113 1.805 -6.009 "H6'1" UFG 55 UFG "H6'2" "2H6'" H 0 0 N N N 18.371 8.939 30.497 3.903 0.462 -5.147 "H6'2" UFG 56 UFG HO2A "'HO2" H 0 0 N N N 19.133 4.961 36.000 -2.667 -0.525 -6.138 HO2A UFG 57 UFG HO3A "'HO3" H 0 0 N N N 20.780 5.062 32.902 1.126 -2.582 -7.867 HO3A UFG 58 UFG "HO6'" "'HO6" H 0 0 N N N 16.315 8.035 29.949 3.897 2.412 -3.942 "HO6'" UFG 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UFG N1 C2 SING N N 1 UFG N1 C6 SING N N 2 UFG N1 C1D SING N N 3 UFG C2 N3 SING N N 4 UFG C2 O2 DOUB N N 5 UFG N3 C4 SING N N 6 UFG N3 HN3 SING N N 7 UFG C4 C5 SING N N 8 UFG C4 O4 DOUB N N 9 UFG C5 C6 DOUB N N 10 UFG C5 H5 SING N N 11 UFG C6 H6 SING N N 12 UFG C1D C2D SING N N 13 UFG C1D "O4'" SING N N 14 UFG C1D H1D SING N N 15 UFG C2D O2D SING N N 16 UFG C2D C3D SING N N 17 UFG C2D H2D SING N N 18 UFG O2D "HO2'" SING N N 19 UFG C3D C4D SING N N 20 UFG C3D O3D SING N N 21 UFG C3D H3D SING N N 22 UFG C4D "O4'" SING N N 23 UFG C4D C5D SING N N 24 UFG C4D H4D SING N N 25 UFG O3D "HO3'" SING N N 26 UFG C5D O5D SING N N 27 UFG C5D "H5'1" SING N N 28 UFG C5D "H5'2" SING N N 29 UFG O5D PA SING N N 30 UFG PA O1A DOUB N N 31 UFG PA O2A SING N N 32 UFG PA O3A SING N N 33 UFG O2A HOA2 SING N N 34 UFG O3A PB SING N N 35 UFG PB O1B DOUB N N 36 UFG PB O2B SING N N 37 UFG PB O3B SING N N 38 UFG O2B HOB2 SING N N 39 UFG O3B "C1'" SING N N 40 UFG "C1'" "C2'" SING N N 41 UFG "C1'" "O5'" SING N N 42 UFG "C1'" "H1'" SING N N 43 UFG "C2'" "C3'" SING N N 44 UFG "C2'" "O2'" SING N N 45 UFG "C2'" "H2'" SING N N 46 UFG "C3'" "C4'" SING N N 47 UFG "C3'" "O3'" SING N N 48 UFG "C3'" "H3'" SING N N 49 UFG "C4'" "C5'" SING N N 50 UFG "C4'" "F4'" SING N N 51 UFG "C4'" "H4'" SING N N 52 UFG "C5'" "C6'" SING N N 53 UFG "C5'" "O5'" SING N N 54 UFG "C5'" "H5'" SING N N 55 UFG "C6'" "O6'" SING N N 56 UFG "C6'" "H6'1" SING N N 57 UFG "C6'" "H6'2" SING N N 58 UFG "O2'" HO2A SING N N 59 UFG "O3'" HO3A SING N N 60 UFG "O6'" "HO6'" SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UFG SMILES ACDLabs 10.04 "O=P(OC1OC(C(F)C(O)C1O)CO)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O" UFG SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@@H](O)[C@@H]1F" UFG SMILES CACTVS 3.341 "OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1F" UFG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)F)O)O)O)O" UFG SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)F)O)O)O)O" UFG InChI InChI 1.03 "InChI=1S/C15H23FN2O16P2/c16-8-5(3-19)32-14(12(24)10(8)22)33-36(28,29)34-35(26,27)30-4-6-9(21)11(23)13(31-6)18-2-1-7(20)17-15(18)25/h1-2,5-6,8-14,19,21-24H,3-4H2,(H,26,27)(H,28,29)(H,17,20,25)/t5-,6-,8-,9-,10+,11-,12-,13-,14-/m1/s1" UFG InChIKey InChI 1.03 OAPPZHVTNHJVAL-JZMIEXBBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UFG "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R,5S,6R)-5-fluoro-3,4-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" UFG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3R,4R,5S,6R)-5-fluoro-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-hydroxy-phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UFG "Create component" 1999-07-08 RCSB UFG "Modify descriptor" 2011-06-04 RCSB #