data_UGR # _chem_comp.id UGR _chem_comp.name "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H26 N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-03 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UGR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CET _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UGR N N1 N 0 1 N N N 18.620 13.240 41.831 7.763 -3.170 0.830 N UGR 1 UGR CA C1 C 0 1 N N S 19.921 13.207 41.079 6.622 -3.589 0.004 CA UGR 2 UGR C C2 C 0 1 N N N 19.932 12.171 39.945 7.102 -4.520 -1.079 C UGR 3 UGR O O1 O 0 1 N N N 18.973 12.157 39.151 8.268 -4.532 -1.394 O UGR 4 UGR CB C3 C 0 1 N N N 21.085 12.912 42.028 5.974 -2.357 -0.632 CB UGR 5 UGR OXT O2 O 0 1 N N N 20.996 11.505 39.823 6.232 -5.337 -1.694 OXT UGR 6 UGR C10 C4 C 0 1 Y N N 21.453 22.554 43.808 -2.105 5.559 -1.471 C10 UGR 7 UGR C12 C5 C 0 1 Y N N 22.588 21.082 45.012 -1.075 3.660 -0.677 C12 UGR 8 UGR C13 C6 C 0 1 Y N N 22.754 21.996 46.071 -2.308 2.990 -0.747 C13 UGR 9 UGR C14 C7 C 0 1 Y N N 23.528 21.318 47.072 -2.056 1.618 -0.280 C14 UGR 10 UGR C15 C8 C 0 1 N N N 24.021 21.913 48.276 -3.013 0.559 -0.173 C15 UGR 11 UGR C16 C9 C 0 1 N N N 24.475 22.486 49.217 -3.799 -0.310 -0.085 C16 UGR 12 UGR C17 C10 C 0 1 Y N N 25.092 23.217 50.283 -4.756 -1.369 0.023 C17 UGR 13 UGR C18 C11 C 0 1 Y N N 26.070 22.627 51.088 -6.099 -1.152 -0.343 C18 UGR 14 UGR C20 C12 C 0 1 Y N N 26.369 24.550 52.319 -6.678 -3.326 0.187 C20 UGR 15 UGR C21 C13 C 0 1 Y N N 25.394 25.234 51.564 -5.346 -3.626 0.570 C21 UGR 16 UGR C22 C14 C 0 1 Y N N 24.758 24.527 50.531 -4.367 -2.623 0.484 C22 UGR 17 UGR C23 C15 C 0 1 Y N N 25.114 26.580 51.878 -5.029 -4.917 1.027 C23 UGR 18 UGR C24 C16 C 0 1 Y N N 25.774 27.209 52.893 -6.004 -5.865 1.097 C24 UGR 19 UGR C25 C17 C 0 1 Y N N 26.732 26.536 53.635 -7.313 -5.572 0.721 C25 UGR 20 UGR C26 C18 C 0 1 Y N N 27.032 25.232 53.362 -7.655 -4.332 0.275 C26 UGR 21 UGR C27 C19 C 0 1 Y N N 23.784 20.060 46.592 -0.731 1.555 0.029 C27 UGR 22 UGR C29 C20 C 0 1 N N R 23.327 18.733 44.493 1.268 3.072 0.013 C29 UGR 23 UGR C30 C21 C 0 1 N N R 24.698 18.066 44.451 1.483 3.633 1.436 C30 UGR 24 UGR C32 C22 C 0 1 N N S 24.328 16.671 43.924 2.837 3.032 1.876 C32 UGR 25 UGR C34 C23 C 0 1 N N S 22.851 16.505 44.324 3.279 2.178 0.667 C34 UGR 26 UGR C36 C24 C 0 1 N N N 22.630 15.272 45.183 3.969 0.898 1.143 C36 UGR 27 UGR C38 C25 C 0 1 N N N 21.351 14.038 43.011 5.377 -1.472 0.464 C38 UGR 28 UGR C8 C26 C 0 1 Y N N 22.174 23.279 45.877 -3.431 3.691 -1.203 C8 UGR 29 UGR N11 N2 N 0 1 Y N N 21.949 21.316 43.864 -1.025 4.938 -1.049 N11 UGR 30 UGR N19 N3 N 0 1 Y N N 26.697 23.242 52.070 -6.993 -2.103 -0.254 N19 UGR 31 UGR N28 N4 N 0 1 Y N N 23.225 19.908 45.348 -0.148 2.768 -0.207 N28 UGR 32 UGR N7 N5 N 0 1 N N N 22.216 24.269 46.787 -4.666 3.073 -1.288 N7 UGR 33 UGR N9 N6 N 0 1 Y N N 21.531 23.525 44.718 -3.282 4.966 -1.552 N9 UGR 34 UGR O31 O3 O 0 1 N N N 25.600 18.720 43.562 1.552 5.060 1.406 O31 UGR 35 UGR O33 O4 O 0 1 N N N 24.502 16.600 42.511 3.786 4.069 2.131 O33 UGR 36 UGR O35 O5 O 0 1 N N N 22.456 17.732 44.974 2.054 1.861 -0.029 O35 UGR 37 UGR S37 S1 S 0 1 N N N 22.714 13.766 44.172 4.608 -0.012 -0.290 S37 UGR 38 UGR H1 H1 H 0 1 N N N 18.670 13.929 42.554 8.169 -3.958 1.312 H1 UGR 39 UGR H2 H2 H 0 1 N N N 17.877 13.470 41.202 8.455 -2.691 0.274 H2 UGR 40 UGR H4 H4 H 0 1 N N N 20.089 14.199 40.633 5.891 -4.103 0.628 H4 UGR 41 UGR H5 H5 H 0 1 N N N 20.851 11.999 42.596 6.727 -1.795 -1.184 H5 UGR 42 UGR H6 H6 H 0 1 N N N 21.993 12.749 41.429 5.185 -2.674 -1.314 H6 UGR 43 UGR H7 H7 H 0 1 N N N 20.956 10.987 39.028 6.587 -5.917 -2.383 H7 UGR 44 UGR H8 H8 H 0 1 N N N 20.917 22.802 42.904 -2.027 6.597 -1.760 H8 UGR 45 UGR H9 H9 H 0 1 N N N 26.329 21.597 50.892 -6.397 -0.179 -0.704 H9 UGR 46 UGR H10 H10 H 0 1 N N N 24.004 25.014 49.930 -3.343 -2.819 0.767 H10 UGR 47 UGR H11 H11 H 0 1 N N N 24.370 27.118 51.310 -4.017 -5.155 1.320 H11 UGR 48 UGR H12 H12 H 0 1 N N N 25.548 28.240 53.120 -5.759 -6.856 1.449 H12 UGR 49 UGR H13 H13 H 0 1 N N N 27.246 27.047 54.436 -8.068 -6.341 0.785 H13 UGR 50 UGR H14 H14 H 0 1 N N N 27.781 24.720 53.948 -8.675 -4.122 -0.012 H14 UGR 51 UGR H15 H15 H 0 1 N N N 24.344 19.300 47.116 -0.220 0.680 0.403 H15 UGR 52 UGR H16 H16 H 0 1 N N N 23.046 19.009 43.466 1.623 3.781 -0.734 H16 UGR 53 UGR H17 H17 H 0 1 N N N 25.113 17.987 45.466 0.685 3.304 2.101 H17 UGR 54 UGR H18 H18 H 0 1 N N N 24.935 15.911 44.437 2.708 2.406 2.759 H18 UGR 55 UGR H19 H19 H 0 1 N N N 22.265 16.385 43.401 3.944 2.751 0.021 H19 UGR 56 UGR H20 H20 H 0 1 N N N 21.639 15.334 45.657 4.794 1.156 1.807 H20 UGR 57 UGR H21 H21 H 0 1 N N N 23.407 15.229 45.961 3.251 0.276 1.678 H21 UGR 58 UGR H22 H22 H 0 1 N N N 21.577 14.945 42.432 4.624 -2.035 1.016 H22 UGR 59 UGR H23 H23 H 0 1 N N N 20.434 14.197 43.598 6.167 -1.156 1.145 H23 UGR 60 UGR H24 H24 H 0 1 N N N 21.735 25.070 46.431 -4.762 2.143 -1.030 H24 UGR 61 UGR H25 H25 H 0 1 N N N 21.776 23.964 47.632 -5.437 3.569 -1.606 H25 UGR 62 UGR H26 H26 H 0 1 N N N 25.816 19.579 43.905 1.686 5.466 2.273 H26 UGR 63 UGR H27 H27 H 0 1 N N N 25.422 16.706 42.299 3.558 4.636 2.880 H27 UGR 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UGR O C DOUB N N 1 UGR OXT C SING N N 2 UGR C CA SING N N 3 UGR CA N SING N N 4 UGR CA CB SING N N 5 UGR CB C38 SING N N 6 UGR O33 C32 SING N N 7 UGR C38 S37 SING N N 8 UGR O31 C30 SING N N 9 UGR C10 N11 DOUB Y N 10 UGR C10 N9 SING Y N 11 UGR N11 C12 SING Y N 12 UGR C32 C34 SING N N 13 UGR C32 C30 SING N N 14 UGR S37 C36 SING N N 15 UGR C34 O35 SING N N 16 UGR C34 C36 SING N N 17 UGR C30 C29 SING N N 18 UGR C29 O35 SING N N 19 UGR C29 N28 SING N N 20 UGR N9 C8 DOUB Y N 21 UGR C12 N28 SING Y N 22 UGR C12 C13 DOUB Y N 23 UGR N28 C27 SING Y N 24 UGR C8 C13 SING Y N 25 UGR C8 N7 SING N N 26 UGR C13 C14 SING Y N 27 UGR C27 C14 DOUB Y N 28 UGR C14 C15 SING N N 29 UGR C15 C16 TRIP N N 30 UGR C16 C17 SING N N 31 UGR C17 C22 DOUB Y N 32 UGR C17 C18 SING Y N 33 UGR C22 C21 SING Y N 34 UGR C18 N19 DOUB Y N 35 UGR C21 C23 DOUB Y N 36 UGR C21 C20 SING Y N 37 UGR C23 C24 SING Y N 38 UGR N19 C20 SING Y N 39 UGR C20 C26 DOUB Y N 40 UGR C24 C25 DOUB Y N 41 UGR C26 C25 SING Y N 42 UGR N H1 SING N N 43 UGR N H2 SING N N 44 UGR CA H4 SING N N 45 UGR CB H5 SING N N 46 UGR CB H6 SING N N 47 UGR OXT H7 SING N N 48 UGR C10 H8 SING N N 49 UGR C18 H9 SING N N 50 UGR C22 H10 SING N N 51 UGR C23 H11 SING N N 52 UGR C24 H12 SING N N 53 UGR C25 H13 SING N N 54 UGR C26 H14 SING N N 55 UGR C27 H15 SING N N 56 UGR C29 H16 SING N N 57 UGR C30 H17 SING N N 58 UGR C32 H18 SING N N 59 UGR C34 H19 SING N N 60 UGR C36 H20 SING N N 61 UGR C36 H21 SING N N 62 UGR C38 H22 SING N N 63 UGR C38 H23 SING N N 64 UGR N7 H24 SING N N 65 UGR N7 H25 SING N N 66 UGR O31 H26 SING N N 67 UGR O33 H27 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UGR InChI InChI 1.06 "InChI=1S/C26H26N6O5S/c27-17(26(35)36)7-8-38-12-19-21(33)22(34)25(37-19)32-11-16(20-23(28)30-13-31-24(20)32)6-5-14-9-15-3-1-2-4-18(15)29-10-14/h1-4,9-11,13,17,19,21-22,25,33-34H,7-8,12,27H2,(H,35,36)(H2,28,30,31)/t17-,19+,21+,22+,25+/m0/s1" UGR InChIKey InChI 1.06 SPMFBZXXQBXKFX-LUOSIZPJSA-N UGR SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(C#Cc3cnc4ccccc4c3)c5c(N)ncnc25)C(O)=O" UGR SMILES CACTVS 3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(C#Cc3cnc4ccccc4c3)c5c(N)ncnc25)C(O)=O" UGR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(cn2)C#Cc3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CSCC[C@@H](C(=O)O)N)O)O" UGR SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(cn2)C#Cc3cn(c4c3c(ncn4)N)C5C(C(C(O5)CSCCC(C(=O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id UGR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UGR "Create component" 2023-02-03 PDBE UGR "Initial release" 2023-04-05 RCSB #