data_UJG # _chem_comp.id UJG _chem_comp.name "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-5-[(2R)-tetrahydrothiophen-2-yl]-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl}-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H41 N9 O15 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-18 _chem_comp.pdbx_modified_date 2021-09-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 873.721 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UJG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UJG PA P1 P 0 1 N N N -38.323 43.470 82.486 4.618 3.212 -0.039 PA UJG 1 UJG O1A O1 O 0 1 N N N -39.251 42.275 82.874 5.284 3.590 -1.305 O1A UJG 2 UJG O2A O2 O 0 1 N N N -36.910 43.207 82.309 4.423 4.522 0.876 O2A UJG 3 UJG O5B O3 O 0 1 N N N -38.200 44.535 83.525 5.525 2.139 0.746 O5B UJG 4 UJG C5B C1 C 0 1 N N N -37.283 45.616 83.522 6.894 2.375 1.083 C5B UJG 5 UJG C4B C2 C 0 1 N N R -37.754 46.623 84.574 7.455 1.158 1.821 C4B UJG 6 UJG O4B O4 O 0 1 N N N -37.760 46.134 85.901 7.507 0.029 0.933 O4B UJG 7 UJG C3B C3 C 0 1 N N S -36.958 47.891 84.662 8.897 1.444 2.283 C3B UJG 8 UJG O3B O5 O 0 1 N N N -37.204 48.748 83.632 8.995 1.350 3.705 O3B UJG 9 UJG C2B C4 C 0 1 N N R -37.407 48.443 85.949 9.739 0.335 1.607 C2B UJG 10 UJG O2B O6 O 0 1 N N N -38.611 49.118 85.821 10.731 -0.170 2.504 O2B UJG 11 UJG C1B C5 C 0 1 N N R -37.590 47.220 86.771 8.669 -0.744 1.301 C1B UJG 12 UJG N9A N1 N 0 1 Y N N -36.468 46.997 87.667 9.097 -1.595 0.188 N9A UJG 13 UJG C8A C6 C 0 1 Y N N -35.144 46.733 87.360 8.839 -1.384 -1.134 C8A UJG 14 UJG N7A N2 N 0 1 Y N N -34.446 46.590 88.499 9.369 -2.335 -1.847 N7A UJG 15 UJG C5A C7 C 0 1 Y N N -35.291 46.761 89.584 10.000 -3.213 -1.031 C5A UJG 16 UJG C6A C8 C 0 1 Y N N -35.117 46.718 90.954 10.727 -4.398 -1.230 C6A UJG 17 UJG N6A N3 N 0 1 N N N -33.814 46.441 91.505 10.924 -4.904 -2.503 N6A UJG 18 UJG N1A N4 N 0 1 Y N N -36.167 46.934 91.766 11.222 -5.023 -0.166 N1A UJG 19 UJG C2A C9 C 0 1 Y N N -37.407 47.186 91.277 11.040 -4.548 1.052 C2A UJG 20 UJG N3A N5 N 0 1 Y N N -37.621 47.230 89.925 10.365 -3.441 1.286 N3A UJG 21 UJG C4A C10 C 0 1 Y N N -36.597 47.020 89.073 9.838 -2.746 0.284 C4A UJG 22 UJG N1 N6 N 0 1 N N N -41.173 53.753 81.243 -7.406 2.462 -0.114 N1 UJG 23 UJG C2 C11 C 0 1 N N N -41.589 54.911 81.977 -8.235 3.100 0.733 C2 UJG 24 UJG O2 O7 O 0 1 N N N -41.111 55.118 83.228 -8.274 4.315 0.728 O2 UJG 25 UJG N3 N7 N 0 1 N N N -42.491 55.831 81.420 -9.020 2.417 1.586 N3 UJG 26 UJG C4 C12 C 0 1 N N N -43.001 55.618 80.135 -8.996 1.069 1.611 C4 UJG 27 UJG O4 O8 O 0 1 N N N -43.876 56.544 79.623 -9.710 0.454 2.386 O4 UJG 28 UJG C4X C13 C 0 1 N N N -42.574 54.411 79.343 -8.142 0.380 0.737 C4X UJG 29 UJG N5 N8 N 0 1 N N N -43.080 54.152 78.002 -8.096 -1.037 0.739 N5 UJG 30 UJG C5X C14 C 0 1 Y N N -42.928 52.790 77.481 -7.456 -1.691 -0.325 C5X UJG 31 UJG C6 C15 C 0 1 Y N N -43.734 52.364 76.303 -7.615 -3.051 -0.520 C6 UJG 32 UJG C7 C16 C 0 1 Y N N -43.596 51.053 75.787 -6.973 -3.674 -1.577 C7 UJG 33 UJG C7M C17 C 0 1 N N N -44.422 50.642 74.592 -7.145 -5.156 -1.792 C7M UJG 34 UJG C8 C18 C 0 1 Y N N -42.689 50.128 76.392 -6.177 -2.942 -2.436 C8 UJG 35 UJG C8M C19 C 0 1 N N N -42.545 48.729 75.844 -5.483 -3.628 -3.584 C8M UJG 36 UJG C9 C20 C 0 1 Y N N -41.917 50.526 77.519 -6.015 -1.579 -2.247 C9 UJG 37 UJG C9A C21 C 0 1 Y N N -42.064 51.909 78.058 -6.653 -0.950 -1.194 C9A UJG 38 UJG N10 N9 N 0 1 N N N -41.295 52.323 79.220 -6.500 0.431 -0.986 N10 UJG 39 UJG C10 C22 C 0 1 N N N -41.687 53.523 79.907 -7.348 1.088 -0.122 C10 UJG 40 UJG "C1'" C23 C 0 1 N N N -40.173 51.521 79.740 -5.444 1.168 -1.684 "C1'" UJG 41 UJG "C2'" C24 C 0 1 N N S -40.675 50.500 80.740 -4.135 1.047 -0.902 "C2'" UJG 42 UJG "O2'" O9 O 0 1 N N N -41.127 51.148 81.873 -4.309 1.598 0.405 "O2'" UJG 43 UJG "C3'" C25 C 0 1 N N S -39.585 49.503 81.139 -3.030 1.811 -1.635 "C3'" UJG 44 UJG "O3'" O10 O 0 1 N N N -38.470 50.184 81.589 -2.857 1.260 -2.942 "O3'" UJG 45 UJG "C4'" C26 C 0 1 N N R -39.109 48.557 80.044 -1.721 1.691 -0.852 "C4'" UJG 46 UJG "O4'" O11 O 0 1 N N N -40.083 48.328 79.066 -1.895 2.241 0.455 "O4'" UJG 47 UJG "C5'" C27 C 0 1 N N N -38.608 47.252 80.646 -0.617 2.455 -1.585 "C5'" UJG 48 UJG "O5'" O12 O 0 1 N N N -39.659 46.439 81.100 0.630 2.246 -0.918 "O5'" UJG 49 UJG P P2 P 0 1 N N N -39.792 44.957 80.494 2.012 2.903 -1.418 P UJG 50 UJG O1P O13 O 0 1 N N N -39.950 44.847 78.928 1.852 4.371 -1.521 O1P UJG 51 UJG O2P O14 O 0 1 N N N -40.982 44.433 81.392 2.401 2.303 -2.860 O2P UJG 52 UJG O3P O15 O 0 1 N N N -38.487 44.241 81.208 3.180 2.564 -0.362 O3P UJG 53 UJG C01 C28 C 0 1 N N N -40.952 57.036 77.498 -10.228 -3.844 1.967 C01 UJG 54 UJG C02 C29 C 0 1 N N N -42.163 56.217 77.056 -10.023 -2.458 1.368 C02 UJG 55 UJG C03 C30 C 0 1 N N R -41.787 54.752 76.894 -8.705 -1.803 1.829 C03 UJG 56 UJG C05 C31 C 0 1 N N N -39.893 56.113 78.038 -9.069 -4.267 2.893 C05 UJG 57 UJG S04 S1 S 0 1 N N N -39.982 54.655 77.006 -7.666 -3.257 2.265 S04 UJG 58 UJG H1 H1 H 0 1 N N N -36.737 42.286 82.464 3.991 4.349 1.724 H1 UJG 59 UJG H2 H2 H 0 1 N N N -36.275 45.254 83.774 7.468 2.544 0.172 H2 UJG 60 UJG H3 H3 H 0 1 N N N -37.265 46.090 82.530 6.964 3.253 1.724 H3 UJG 61 UJG H4 H4 H 0 1 N N N -38.783 46.904 84.306 6.827 0.925 2.681 H4 UJG 62 UJG H5 H5 H 0 1 N N N -35.888 47.641 84.723 9.218 2.429 1.944 H5 UJG 63 UJG H6 H6 H 0 1 N N N -36.676 49.531 83.738 9.881 1.521 4.051 H6 UJG 64 UJG H7 H7 H 0 1 N N N -36.626 49.082 86.386 10.198 0.700 0.688 H7 UJG 65 UJG H8 H8 H 0 1 N N N -38.873 49.462 86.667 11.371 0.493 2.795 H8 UJG 66 UJG H9 H9 H 0 1 N N N -38.500 47.347 87.375 8.465 -1.345 2.188 H9 UJG 67 UJG H10 H10 H 0 1 N N N -34.737 46.654 86.363 8.276 -0.552 -1.530 H10 UJG 68 UJG H11 H11 H 0 1 N N N -33.866 46.446 92.504 10.558 -4.439 -3.271 H11 UJG 69 UJG H12 H12 H 0 1 N N N -33.504 45.543 91.192 11.428 -5.723 -2.627 H12 UJG 70 UJG H13 H13 H 0 1 N N N -38.229 47.353 91.957 11.459 -5.087 1.889 H13 UJG 71 UJG H14 H14 H 0 1 N N N -40.530 53.105 81.651 -6.851 2.973 -0.724 H14 UJG 72 UJG H15 H15 H 0 1 N N N -42.769 56.638 81.941 -9.609 2.899 2.187 H15 UJG 73 UJG H16 H16 H 0 1 N N N -44.424 53.056 75.842 -8.237 -3.625 0.152 H16 UJG 74 UJG H17 H17 H 0 1 N N N -43.870 50.869 73.668 -8.000 -5.332 -2.444 H17 UJG 75 UJG H18 H18 H 0 1 N N N -44.626 49.562 74.641 -6.246 -5.563 -2.254 H18 UJG 76 UJG H19 H19 H 0 1 N N N -45.373 51.195 74.596 -7.313 -5.645 -0.832 H19 UJG 77 UJG H20 H20 H 0 1 N N N -41.755 48.714 75.078 -6.130 -3.613 -4.462 H20 UJG 78 UJG H21 H21 H 0 1 N N N -42.277 48.041 76.660 -4.553 -3.107 -3.810 H21 UJG 79 UJG H22 H22 H 0 1 N N N -43.497 48.412 75.395 -5.264 -4.661 -3.312 H22 UJG 80 UJG H23 H23 H 0 1 N N N -41.230 49.832 77.981 -5.391 -1.010 -2.920 H23 UJG 81 UJG H24 H24 H 0 1 N N N -39.682 51.000 78.905 -5.310 0.752 -2.683 H24 UJG 82 UJG H25 H25 H 0 1 N N N -39.449 52.187 80.233 -5.725 2.218 -1.763 H25 UJG 83 UJG H26 H26 H 0 1 N N N -41.497 49.937 80.274 -3.857 -0.004 -0.819 H26 UJG 84 UJG H27 H27 H 0 1 N N N -41.442 50.508 82.500 -4.485 2.549 0.411 H27 UJG 85 UJG H28 H28 H 0 1 N N N -39.988 48.886 81.956 -3.309 2.862 -1.717 H28 UJG 86 UJG H29 H29 H 0 1 N N N -37.796 49.561 81.835 -2.608 0.326 -2.945 H29 UJG 87 UJG H30 H30 H 0 1 N N N -38.244 49.038 79.564 -1.443 0.640 -0.770 H30 UJG 88 UJG H31 H31 H 0 1 N N N -39.739 47.735 78.409 -2.144 3.176 0.458 H31 UJG 89 UJG H32 H32 H 0 1 N N N -38.041 46.703 79.880 -0.545 2.094 -2.611 H32 UJG 90 UJG H33 H33 H 0 1 N N N -37.948 47.484 81.495 -0.853 3.519 -1.590 H33 UJG 91 UJG H34 H34 H 0 1 N N N -41.677 44.101 80.836 2.523 1.343 -2.867 H34 UJG 92 UJG H35 H35 H 0 1 N N N -40.551 57.591 76.637 -11.156 -3.847 2.539 H35 UJG 93 UJG H36 H36 H 0 1 N N N -41.255 57.745 78.282 -10.314 -4.568 1.157 H36 UJG 94 UJG H37 H37 H 0 1 N N N -42.955 56.305 77.814 -10.015 -2.541 0.282 H37 UJG 95 UJG H38 H38 H 0 1 N N N -42.530 56.605 76.094 -10.856 -1.820 1.664 H38 UJG 96 UJG H39 H39 H 0 1 N N N -42.056 54.409 75.884 -8.872 -1.168 2.699 H39 UJG 97 UJG H40 H40 H 0 1 N N N -38.899 56.579 77.964 -9.292 -4.017 3.930 H40 UJG 98 UJG H41 H41 H 0 1 N N N -40.101 55.857 79.087 -8.858 -5.331 2.787 H41 UJG 99 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UJG PA O1A DOUB N N 1 UJG PA O2A SING N N 2 UJG PA O5B SING N N 3 UJG PA O3P SING N N 4 UJG O5B C5B SING N N 5 UJG C5B C4B SING N N 6 UJG C4B O4B SING N N 7 UJG C4B C3B SING N N 8 UJG O4B C1B SING N N 9 UJG C3B O3B SING N N 10 UJG C3B C2B SING N N 11 UJG C2B O2B SING N N 12 UJG C2B C1B SING N N 13 UJG C1B N9A SING N N 14 UJG N9A C8A SING Y N 15 UJG N9A C4A SING Y N 16 UJG C8A N7A DOUB Y N 17 UJG N7A C5A SING Y N 18 UJG C5A C6A DOUB Y N 19 UJG C5A C4A SING Y N 20 UJG C6A N6A SING N N 21 UJG C6A N1A SING Y N 22 UJG N1A C2A DOUB Y N 23 UJG C2A N3A SING Y N 24 UJG N3A C4A DOUB Y N 25 UJG N1 C2 SING N N 26 UJG N1 C10 SING N N 27 UJG C2 O2 DOUB N N 28 UJG C2 N3 SING N N 29 UJG N3 C4 SING N N 30 UJG C4 O4 DOUB N N 31 UJG C4 C4X SING N N 32 UJG C4X N5 SING N N 33 UJG C4X C10 DOUB N N 34 UJG N5 C5X SING N N 35 UJG C5X C6 DOUB Y N 36 UJG C5X C9A SING Y N 37 UJG C6 C7 SING Y N 38 UJG C7 C7M SING N N 39 UJG C7 C8 DOUB Y N 40 UJG C8 C8M SING N N 41 UJG C8 C9 SING Y N 42 UJG C9 C9A DOUB Y N 43 UJG C9A N10 SING N N 44 UJG N10 C10 SING N N 45 UJG N10 "C1'" SING N N 46 UJG "C1'" "C2'" SING N N 47 UJG "C2'" "O2'" SING N N 48 UJG "C2'" "C3'" SING N N 49 UJG "C3'" "O3'" SING N N 50 UJG "C3'" "C4'" SING N N 51 UJG "C4'" "O4'" SING N N 52 UJG "C4'" "C5'" SING N N 53 UJG "C5'" "O5'" SING N N 54 UJG "O5'" P SING N N 55 UJG P O1P DOUB N N 56 UJG P O2P SING N N 57 UJG P O3P SING N N 58 UJG C01 C02 SING N N 59 UJG C01 C05 SING N N 60 UJG C02 C03 SING N N 61 UJG C03 S04 SING N N 62 UJG C05 S04 SING N N 63 UJG N5 C03 SING N N 64 UJG O2A H1 SING N N 65 UJG C5B H2 SING N N 66 UJG C5B H3 SING N N 67 UJG C4B H4 SING N N 68 UJG C3B H5 SING N N 69 UJG O3B H6 SING N N 70 UJG C2B H7 SING N N 71 UJG O2B H8 SING N N 72 UJG C1B H9 SING N N 73 UJG C8A H10 SING N N 74 UJG N6A H11 SING N N 75 UJG N6A H12 SING N N 76 UJG C2A H13 SING N N 77 UJG N1 H14 SING N N 78 UJG N3 H15 SING N N 79 UJG C6 H16 SING N N 80 UJG C7M H17 SING N N 81 UJG C7M H18 SING N N 82 UJG C7M H19 SING N N 83 UJG C8M H20 SING N N 84 UJG C8M H21 SING N N 85 UJG C8M H22 SING N N 86 UJG C9 H23 SING N N 87 UJG "C1'" H24 SING N N 88 UJG "C1'" H25 SING N N 89 UJG "C2'" H26 SING N N 90 UJG "O2'" H27 SING N N 91 UJG "C3'" H28 SING N N 92 UJG "O3'" H29 SING N N 93 UJG "C4'" H30 SING N N 94 UJG "O4'" H31 SING N N 95 UJG "C5'" H32 SING N N 96 UJG "C5'" H33 SING N N 97 UJG O2P H34 SING N N 98 UJG C01 H35 SING N N 99 UJG C01 H36 SING N N 100 UJG C02 H37 SING N N 101 UJG C02 H38 SING N N 102 UJG C03 H39 SING N N 103 UJG C05 H40 SING N N 104 UJG C05 H41 SING N N 105 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UJG SMILES ACDLabs 12.01 "P(=O)(O)(OCC1OC(C(C1O)O)n2cnc3c(N)ncnc23)OP(OCC(C(C(CN5c7c(N(C=4C(NC(NC=45)=O)=O)C6CCCS6)cc(C)c(C)c7)O)O)O)(=O)O" UJG InChI InChI 1.03 "InChI=1S/C31H41N9O15P2S/c1-13-6-15-16(7-14(13)2)40(20-4-3-5-58-20)22-28(36-31(47)37-29(22)46)38(15)8-17(41)23(43)18(42)9-52-56(48,49)55-57(50,51)53-10-19-24(44)25(45)30(54-19)39-12-35-21-26(32)33-11-34-27(21)39/h6-7,11-12,17-20,23-25,30,41-45H,3-5,8-10H2,1-2H3,(H,48,49)(H,50,51)(H2,32,33,34)(H2,36,37,46,47)/t17-,18+,19+,20+,23-,24+,25+,30+/m0/s1" UJG InChIKey InChI 1.03 LSSZTRLJARKKDF-JFPATDFNSA-N UJG SMILES_CANONICAL CACTVS 3.385 "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=C(N([C@H]7CCCS7)c2cc1C)C(=O)NC(=O)N6" UJG SMILES CACTVS 3.385 "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=C(N([CH]7CCCS7)c2cc1C)C(=O)NC(=O)N6" UJG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N(C3=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O)NC(=O)NC3=O)[C@H]7CCCS7" UJG SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N(C3=C(N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O)NC(=O)NC3=O)C7CCCS7" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UJG "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-5-[(2R)-tetrahydrothiophen-2-yl]-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl}-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)" UJG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[7,8-dimethyl-2,4-bis(oxidanylidene)-5-[(2~{R})-thiolan-2-yl]-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UJG "Create component" 2020-05-18 RCSB UJG "Initial release" 2021-09-29 RCSB ##