data_URI # _chem_comp.id URI _chem_comp.name URIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-03-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.201 _chem_comp.one_letter_code ? _chem_comp.three_letter_code URI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1I5L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal URI N1 N1 N 0 1 N N N 13.859 6.258 12.518 -0.241 0.429 -1.029 N1 URI 1 URI C2 C2 C 0 1 N N N 14.153 5.779 11.254 0.482 -0.634 -1.422 C2 URI 2 URI N3 N3 N 0 1 N N N 13.320 6.227 10.257 0.743 -0.850 -2.725 N3 URI 3 URI C4 C4 C 0 1 N N N 12.238 7.073 10.394 0.289 0.007 -3.661 C4 URI 4 URI C5 C5 C 0 1 N N N 11.977 7.497 11.738 -0.468 1.134 -3.260 C5 URI 5 URI C6 C6 C 0 1 N N N 12.771 7.080 12.731 -0.720 1.324 -1.947 C6 URI 6 URI O2 O2 O 0 1 N N N 15.078 5.010 11.037 0.898 -1.416 -0.590 O2 URI 7 URI O4 O4 O 0 1 N N N 11.593 7.395 9.395 0.529 -0.184 -4.839 O4 URI 8 URI "C1'" C1* C 0 1 N N R 14.779 5.894 13.607 -0.513 0.636 0.394 "C1'" URI 9 URI "C2'" C2* C 0 1 N N R 14.648 6.799 14.833 -1.204 -0.608 1.007 "C2'" URI 10 URI "C3'" C3* C 0 1 N N S 14.868 5.842 16.003 -0.831 -0.481 2.508 "C3'" URI 11 URI "C4'" C4* C 0 1 N N R 14.500 4.472 15.446 0.409 0.431 2.508 "C4'" URI 12 URI "O2'" O2* O 0 1 N N N 15.597 7.844 14.783 -2.620 -0.546 0.828 "O2'" URI 13 URI "O3'" O3* O 0 1 N N N 16.275 5.893 16.189 -1.901 0.117 3.240 "O3'" URI 14 URI "O4'" O4* O 0 1 N N N 14.513 4.571 14.003 0.719 0.737 1.138 "O4'" URI 15 URI "C5'" C5* C 0 1 N N N 13.181 3.891 15.891 1.589 -0.293 3.159 "C5'" URI 16 URI "O5'" O5* O 0 1 N N N 13.240 3.291 17.191 2.736 0.558 3.148 "O5'" URI 17 URI H3 H3 H 0 1 N N N 13.526 5.896 9.314 1.263 -1.624 -2.991 H3 URI 18 URI H5 H5 H 0 1 N N N 11.142 8.162 12.015 -0.841 1.832 -3.995 H5 URI 19 URI H6 H6 H 0 1 N N N 12.522 7.422 13.749 -1.296 2.178 -1.623 H6 URI 20 URI "H1'" H1* H 0 1 N N N 15.815 6.011 13.212 -1.125 1.526 0.542 "H1'" URI 21 URI "H2'" H2* H 0 1 N N N 13.665 7.320 14.910 -0.799 -1.527 0.581 "H2'" URI 22 URI "H3'" H3* H 0 1 N N N 14.302 6.063 16.938 -0.585 -1.458 2.924 "H3'" URI 23 URI "H4'" H4* H 0 1 N N N 15.258 3.764 15.855 0.193 1.350 3.053 "H4'" URI 24 URI "HO2'" *HO2 H 0 0 N N N 15.515 8.406 15.544 -2.988 -1.345 1.229 "HO2'" URI 25 URI "HO3'" *HO3 H 0 0 N N N 16.411 5.297 16.916 -1.614 0.170 4.162 "HO3'" URI 26 URI "H5'1" 1H5* H 0 0 N N N 12.373 4.658 15.843 1.808 -1.204 2.602 "H5'1" URI 27 URI "H5'2" 2H5* H 0 0 N N N 12.791 3.167 15.137 1.336 -0.548 4.188 "H5'2" URI 28 URI "HO5'" *HO5 H 0 0 N N N 12.409 2.925 17.471 3.455 0.064 3.567 "HO5'" URI 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal URI N1 C2 SING N N 1 URI N1 C6 SING N N 2 URI N1 "C1'" SING N N 3 URI C2 N3 SING N N 4 URI C2 O2 DOUB N N 5 URI N3 C4 SING N N 6 URI N3 H3 SING N N 7 URI C4 C5 SING N N 8 URI C4 O4 DOUB N N 9 URI C5 C6 DOUB N N 10 URI C5 H5 SING N N 11 URI C6 H6 SING N N 12 URI "C1'" "C2'" SING N N 13 URI "C1'" "O4'" SING N N 14 URI "C1'" "H1'" SING N N 15 URI "C2'" "C3'" SING N N 16 URI "C2'" "O2'" SING N N 17 URI "C2'" "H2'" SING N N 18 URI "C3'" "C4'" SING N N 19 URI "C3'" "O3'" SING N N 20 URI "C3'" "H3'" SING N N 21 URI "C4'" "O4'" SING N N 22 URI "C4'" "C5'" SING N N 23 URI "C4'" "H4'" SING N N 24 URI "O2'" "HO2'" SING N N 25 URI "O3'" "HO3'" SING N N 26 URI "C5'" "O5'" SING N N 27 URI "C5'" "H5'1" SING N N 28 URI "C5'" "H5'2" SING N N 29 URI "O5'" "HO5'" SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor URI SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CO" URI SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O" URI SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O" URI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O" URI SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O" URI InChI InChI 1.03 "InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1" URI InChIKey InChI 1.03 DRTQHJPVMGBUCF-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier URI "SYSTEMATIC NAME" ACDLabs 10.04 uridine URI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site URI "Create component" 2001-03-08 RCSB URI "Modify descriptor" 2011-06-04 RCSB #