data_UTP # _chem_comp.id UTP _chem_comp.name "URIDINE 5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N2 O15 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-03-27 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UTP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1GX6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UTP PA PA P 0 1 N N R 18.309 26.365 27.441 -1.462 0.132 -0.265 PA UTP 1 UTP O1A O1A O 0 1 N N N 19.058 25.478 26.514 -2.059 1.390 -0.766 O1A UTP 2 UTP O2A O2A O 0 1 N N N 18.460 26.206 28.913 -1.132 -0.838 -1.508 O2A UTP 3 UTP O3A O3A O 0 1 N N N 16.725 26.328 27.094 -2.501 -0.599 0.724 O3A UTP 4 UTP "O5'" O5* O 0 1 N N N 18.566 27.884 27.076 -0.104 0.463 0.533 "O5'" UTP 5 UTP PB PB P 0 1 N N S 15.502 25.636 27.821 -3.943 -0.542 0.009 PB UTP 6 UTP O1B O1B O 0 1 N N N 15.755 25.133 29.161 -4.037 -1.701 -1.104 O1B UTP 7 UTP O2B O2B O 0 1 N N N 14.962 24.729 26.843 -4.121 0.778 -0.637 O2B UTP 8 UTP O3B O3B O 0 1 N N N 14.560 26.910 27.985 -5.097 -0.760 1.110 O3B UTP 9 UTP PG PG P 0 1 N N N 13.146 27.070 28.678 -6.482 -0.302 0.430 PG UTP 10 UTP O1G O1G O 0 1 N N N 12.961 28.560 28.983 -7.030 -1.481 -0.520 O1G UTP 11 UTP O2G O2G O 0 1 N N N 12.192 26.542 27.637 -6.256 0.917 -0.378 O2G UTP 12 UTP O3G O3G O 0 1 N N N 13.123 26.239 29.952 -7.567 0.009 1.578 O3G UTP 13 UTP "C5'" C5* C 0 1 N N N 17.953 28.908 27.837 0.726 1.211 -0.358 "C5'" UTP 14 UTP "C4'" C4* C 0 1 N N R 17.799 30.142 26.999 2.041 1.560 0.343 "C4'" UTP 15 UTP "O4'" O4* O 0 1 N N N 16.765 29.918 26.002 2.808 0.361 0.601 "O4'" UTP 16 UTP "C1'" C1* C 0 1 N N R 16.025 31.105 25.856 4.168 0.809 0.786 "C1'" UTP 17 UTP "C2'" C2* C 0 1 N N R 15.960 31.654 27.282 4.372 1.904 -0.284 "C2'" UTP 18 UTP "O2'" O2* O 0 1 N N N 15.624 33.021 27.293 5.181 2.965 0.229 "O2'" UTP 19 UTP "C3'" C3* C 0 1 N N S 17.378 31.376 27.787 2.942 2.410 -0.580 "C3'" UTP 20 UTP "O3'" O3* O 0 1 N N N 18.272 32.452 27.523 2.824 3.796 -0.257 "O3'" UTP 21 UTP N1 N1 N 0 1 Y N N 14.707 30.780 25.282 5.105 -0.296 0.569 N1 UTP 22 UTP C6 C6 C 0 1 Y N N 13.921 29.782 25.809 6.070 -0.560 1.502 C6 UTP 23 UTP C2 C2 C 0 1 Y N N 14.268 31.537 24.204 5.006 -1.045 -0.545 C2 UTP 24 UTP O2 O2 O 0 1 N N N 14.958 32.393 23.675 4.141 -0.793 -1.361 O2 UTP 25 UTP N3 N3 N 0 1 Y N N 12.997 31.244 23.764 5.856 -2.064 -0.772 N3 UTP 26 UTP C4 C4 C 0 1 Y N N 12.146 30.276 24.267 6.821 -2.356 0.124 C4 UTP 27 UTP O4 O4 O 0 1 N N N 10.996 30.178 23.817 7.588 -3.280 -0.078 O4 UTP 28 UTP C5 C5 C 0 1 Y N N 12.692 29.509 25.350 6.934 -1.579 1.302 C5 UTP 29 UTP H2A H2A H 0 1 N N N 19.383 26.172 29.135 -0.746 -1.644 -1.139 H2A UTP 30 UTP H1B H1B H 0 1 N N N 16.690 25.023 29.287 -3.916 -2.542 -0.643 H1B UTP 31 UTP H1G H1G H 0 1 N N N 12.034 28.758 29.046 -7.164 -2.255 0.044 H1G UTP 32 UTP H3G H3G H 0 1 N N N 14.014 26.066 30.234 -8.380 0.279 1.130 H3G UTP 33 UTP "H5'1" 1H5* H 0 0 N N N 18.582 29.138 28.710 0.215 2.128 -0.648 "H5'1" UTP 34 UTP "H5'2" 2H5* H 0 0 N N N 16.962 28.569 28.172 0.935 0.615 -1.246 "H5'2" UTP 35 UTP "H4'" H4* H 0 1 N N N 18.791 30.329 26.562 1.845 2.092 1.274 "H4'" UTP 36 UTP "H1'" H1* H 0 1 N N N 16.459 31.850 25.173 4.299 1.225 1.785 "H1'" UTP 37 UTP "H2'" H2* H 0 1 N N N 15.184 31.197 27.914 4.821 1.482 -1.183 "H2'" UTP 38 UTP HA HA H 0 1 N N N 14.679 33.115 27.295 5.221 3.643 -0.459 HA UTP 39 UTP "H3'" H3* H 0 1 N N N 17.401 31.241 28.878 2.686 2.239 -1.626 "H3'" UTP 40 UTP HB HB H 0 1 N N N 17.782 33.264 27.464 3.428 4.273 -0.842 HB UTP 41 UTP H6 H6 H 0 1 N N N 14.311 29.194 26.627 6.141 0.044 2.395 H6 UTP 42 UTP H3 H3 H 0 1 N N N 12.652 31.789 23.000 5.773 -2.591 -1.581 H3 UTP 43 UTP H5 H5 H 0 1 N N N 12.113 28.713 25.795 7.700 -1.798 2.031 H5 UTP 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UTP PA O1A DOUB N N 1 UTP PA O2A SING N N 2 UTP PA O3A SING N N 3 UTP PA "O5'" SING N N 4 UTP O2A H2A SING N N 5 UTP O3A PB SING N N 6 UTP "O5'" "C5'" SING N N 7 UTP PB O1B SING N N 8 UTP PB O2B DOUB N N 9 UTP PB O3B SING N N 10 UTP O1B H1B SING N N 11 UTP O3B PG SING N N 12 UTP PG O1G SING N N 13 UTP PG O2G DOUB N N 14 UTP PG O3G SING N N 15 UTP O1G H1G SING N N 16 UTP O3G H3G SING N N 17 UTP "C5'" "C4'" SING N N 18 UTP "C5'" "H5'1" SING N N 19 UTP "C5'" "H5'2" SING N N 20 UTP "C4'" "O4'" SING N N 21 UTP "C4'" "C3'" SING N N 22 UTP "C4'" "H4'" SING N N 23 UTP "O4'" "C1'" SING N N 24 UTP "C1'" "C2'" SING N N 25 UTP "C1'" N1 SING N N 26 UTP "C1'" "H1'" SING N N 27 UTP "C2'" "O2'" SING N N 28 UTP "C2'" "C3'" SING N N 29 UTP "C2'" "H2'" SING N N 30 UTP "O2'" HA SING N N 31 UTP "C3'" "O3'" SING N N 32 UTP "C3'" "H3'" SING N N 33 UTP "O3'" HB SING N N 34 UTP N1 C6 SING Y N 35 UTP N1 C2 SING Y N 36 UTP C6 C5 DOUB Y N 37 UTP C6 H6 SING N N 38 UTP C2 O2 DOUB N N 39 UTP C2 N3 SING Y N 40 UTP N3 C4 SING Y N 41 UTP N3 H3 SING N N 42 UTP C4 O4 DOUB N N 43 UTP C4 C5 SING Y N 44 UTP C5 H5 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UTP SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O" UTP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O" UTP SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O" UTP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)O" UTP SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" UTP InChI InChI 1.03 "InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" UTP InChIKey InChI 1.03 PGAVKCOVUIYSFO-XVFCMESISA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier UTP "SYSTEMATIC NAME" ACDLabs 10.04 "uridine 5'-(tetrahydrogen triphosphate)" UTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UTP "Create component" 2002-03-27 RCSB UTP "Modify descriptor" 2011-06-04 RCSB ##