data_UY5 # _chem_comp.id UY5 _chem_comp.name "4-[4-[(4,4-dimethylpiperidin-1-yl)methyl]phenyl]-9-[6-(propan-2-ylamino)pyrimidin-4-yl]-1,4,9-triazaspiro[5.5]undecan-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H43 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-03-26 _chem_comp.pdbx_modified_date 2021-09-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.698 _chem_comp.one_letter_code ? _chem_comp.three_letter_code UY5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O0R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal UY5 C10 C1 C 0 1 N N N -43.663 35.131 24.387 -1.474 -0.308 -1.006 C10 UY5 1 UY5 C13 C2 C 0 1 N N N -44.236 34.411 25.621 -1.393 -1.061 0.324 C13 UY5 2 UY5 C17 C3 C 0 1 Y N N -44.531 31.609 23.087 2.244 -1.627 0.228 C17 UY5 3 UY5 C20 C4 C 0 1 Y N N -43.729 29.504 21.491 4.930 -1.183 0.727 C20 UY5 4 UY5 C21 C5 C 0 1 N N N -43.271 28.336 20.625 6.392 -0.942 0.999 C21 UY5 5 UY5 C24 C6 C 0 1 N N N -42.137 25.034 21.321 8.837 1.239 -0.856 C24 UY5 6 UY5 C26 C7 C 0 1 N N N -44.372 23.902 21.361 8.642 3.095 0.808 C26 UY5 7 UY5 C28 C8 C 0 1 N N N -43.809 25.667 23.027 6.675 2.457 -0.597 C28 UY5 8 UY5 C01 C9 C 0 1 N N N -40.624 42.212 22.090 -9.038 3.418 1.793 C01 UY5 9 UY5 C02 C10 C 0 1 N N N -41.370 41.298 23.053 -8.043 2.313 1.432 C02 UY5 10 UY5 C03 C11 C 0 1 N N N -42.677 41.976 23.454 -8.166 1.168 2.439 C03 UY5 11 UY5 C05 C12 C 0 1 Y N N -40.847 39.978 25.196 -7.332 1.221 -0.666 C05 UY5 12 UY5 C06 C13 C 0 1 Y N N -41.774 38.990 24.969 -6.044 1.100 -0.154 C06 UY5 13 UY5 C07 C14 C 0 1 Y N N -42.039 38.081 25.953 -5.072 0.502 -0.951 C07 UY5 14 UY5 C09 C15 C 0 1 N N N -43.607 36.662 24.509 -2.926 -0.296 -1.492 C09 UY5 15 UY5 C11 C16 C 0 1 N N N -43.652 36.473 26.988 -3.748 -0.373 0.786 C11 UY5 16 UY5 C12 C17 C 0 1 N N N -43.740 34.947 26.951 -2.321 -0.388 1.339 C12 UY5 17 UY5 C14 C18 C 0 1 N N N -44.039 32.975 25.100 0.045 -1.015 0.845 C14 UY5 18 UY5 C16 C19 C 0 1 N N N -46.389 32.878 24.169 0.548 -3.269 0.151 C16 UY5 19 UY5 C18 C20 C 0 1 Y N N -45.491 30.871 22.418 3.210 -2.337 -0.475 C18 UY5 20 UY5 C19 C21 C 0 1 Y N N -45.083 29.823 21.612 4.549 -2.113 -0.223 C19 UY5 21 UY5 C23 C22 C 0 1 N N N -42.530 26.306 20.621 8.349 0.225 0.180 C23 UY5 22 UY5 C25 C23 C 0 1 N N N -43.250 24.508 22.202 8.199 2.601 -0.571 C25 UY5 23 UY5 C27 C24 C 0 1 N N N -42.729 23.443 23.163 8.637 3.605 -1.639 C27 UY5 24 UY5 C29 C25 C 0 1 N N N -44.022 26.919 22.121 6.249 1.407 0.432 C29 UY5 25 UY5 C30 C26 C 0 1 Y N N -42.776 30.256 22.165 3.971 -0.471 1.424 C30 UY5 26 UY5 C31 C27 C 0 1 Y N N -43.177 31.307 22.969 2.630 -0.690 1.178 C31 UY5 27 UY5 C33 C28 C 0 1 N N N -46.638 34.100 24.994 -0.938 -3.459 0.029 C33 UY5 28 UY5 C36 C29 C 0 1 Y N N -40.493 39.145 27.338 -6.639 0.204 -2.614 C36 UY5 29 UY5 N04 N1 N 0 1 N N N -40.515 40.984 24.189 -8.335 1.813 0.086 N04 UY5 30 UY5 N08 N2 N 0 1 N N N -43.021 37.005 25.794 -3.774 0.358 -0.487 N08 UY5 31 UY5 N15 N3 N 0 1 N N N -44.941 32.704 23.934 0.889 -1.851 -0.025 N15 UY5 32 UY5 N22 N4 N 0 1 N N N -42.969 27.283 21.392 6.885 0.123 0.115 N22 UY5 33 UY5 N32 N5 N 0 1 N N N -45.599 34.792 25.660 -1.807 -2.448 0.127 N32 UY5 34 UY5 N35 N6 N 0 1 Y N N -41.413 38.169 27.116 -5.408 0.071 -2.165 N35 UY5 35 UY5 N37 N7 N 0 1 Y N N -40.213 40.040 26.363 -7.587 0.763 -1.890 N37 UY5 36 UY5 O34 O1 O 0 1 N N N -47.759 34.482 25.073 -1.366 -4.576 -0.166 O34 UY5 37 UY5 H1 H1 H 0 1 N N N -44.291 34.879 23.520 -1.129 0.717 -0.866 H1 UY5 38 UY5 H2 H2 H 0 1 N N N -42.640 34.762 24.219 -0.847 -0.806 -1.746 H2 UY5 39 UY5 H3 H3 H 0 1 N N N -42.381 28.635 20.052 6.523 -0.641 2.038 H3 UY5 40 UY5 H4 H4 H 0 1 N N N -44.078 28.060 19.931 6.952 -1.858 0.812 H4 UY5 41 UY5 H5 H5 H 0 1 N N N -41.892 24.273 20.565 9.922 1.326 -0.797 H5 UY5 42 UY5 H6 H6 H 0 1 N N N -41.252 25.230 21.945 8.553 0.906 -1.855 H6 UY5 43 UY5 H7 H7 H 0 1 N N N -45.166 23.528 22.024 9.728 3.192 0.827 H7 UY5 44 UY5 H8 H8 H 0 1 N N N -44.785 24.671 20.692 8.187 4.064 1.010 H8 UY5 45 UY5 H9 H9 H 0 1 N N N -43.973 23.070 20.762 8.328 2.380 1.568 H9 UY5 46 UY5 H10 H10 H 0 1 N N N -43.100 25.916 23.831 6.214 3.414 -0.352 H10 UY5 47 UY5 H11 H11 H 0 1 N N N -44.772 25.369 23.467 6.356 2.144 -1.591 H11 UY5 48 UY5 H12 H12 H 0 1 N N N -39.678 41.737 21.791 -8.820 3.790 2.794 H12 UY5 49 UY5 H13 H13 H 0 1 N N N -41.243 42.389 21.198 -8.950 4.234 1.076 H13 UY5 50 UY5 H14 H14 H 0 1 N N N -40.412 43.171 22.585 -10.051 3.018 1.766 H14 UY5 51 UY5 H15 H15 H 0 1 N N N -41.616 40.367 22.521 -7.030 2.713 1.459 H15 UY5 52 UY5 H16 H16 H 0 1 N N N -43.228 41.327 24.151 -7.458 0.380 2.182 H16 UY5 53 UY5 H17 H17 H 0 1 N N N -42.457 42.936 23.944 -7.949 1.539 3.441 H17 UY5 54 UY5 H18 H18 H 0 1 N N N -43.288 42.154 22.557 -9.180 0.767 2.412 H18 UY5 55 UY5 H19 H19 H 0 1 N N N -42.288 38.933 24.021 -5.805 1.461 0.835 H19 UY5 56 UY5 H20 H20 H 0 1 N N N -42.990 37.076 23.698 -2.990 0.251 -2.432 H20 UY5 57 UY5 H21 H21 H 0 1 N N N -44.624 37.076 24.443 -3.266 -1.320 -1.644 H21 UY5 58 UY5 H22 H22 H 0 1 N N N -43.063 36.775 27.867 -4.085 -1.397 0.624 H22 UY5 59 UY5 H23 H23 H 0 1 N N N -44.668 36.887 27.068 -4.409 0.118 1.500 H23 UY5 60 UY5 H24 H24 H 0 1 N N N -44.431 34.617 27.741 -2.300 -0.943 2.277 H24 UY5 61 UY5 H25 H25 H 0 1 N N N -42.739 34.534 27.143 -1.988 0.635 1.514 H25 UY5 62 UY5 H26 H26 H 0 1 N N N -44.269 32.264 25.907 0.408 0.013 0.827 H26 UY5 63 UY5 H27 H27 H 0 1 N N N -42.993 32.846 24.785 0.078 -1.396 1.865 H27 UY5 64 UY5 H28 H28 H 0 1 N N N -46.904 32.982 23.202 0.876 -3.601 1.136 H28 UY5 65 UY5 H29 H29 H 0 1 N N N -46.779 31.997 24.699 1.052 -3.858 -0.615 H29 UY5 66 UY5 H30 H30 H 0 1 N N N -46.539 31.108 22.523 2.913 -3.064 -1.217 H30 UY5 67 UY5 H31 H31 H 0 1 N N N -45.819 29.246 21.071 5.300 -2.665 -0.770 H31 UY5 68 UY5 H32 H32 H 0 1 N N N -41.648 26.677 20.078 8.790 -0.750 -0.029 H32 UY5 69 UY5 H33 H33 H 0 1 N N N -43.326 26.062 19.903 8.646 0.552 1.177 H33 UY5 70 UY5 H34 H34 H 0 1 N N N -43.556 23.078 23.790 8.319 3.254 -2.620 H34 UY5 71 UY5 H35 H35 H 0 1 N N N -42.308 22.605 22.588 8.182 4.575 -1.434 H35 UY5 72 UY5 H36 H36 H 0 1 N N N -41.947 23.878 23.803 9.723 3.703 -1.622 H36 UY5 73 UY5 H37 H37 H 0 1 N N N -44.294 27.765 22.770 6.556 1.729 1.427 H37 UY5 74 UY5 H38 H38 H 0 1 N N N -44.852 26.702 21.433 5.165 1.292 0.406 H38 UY5 75 UY5 H39 H39 H 0 1 N N N -41.727 30.021 22.062 4.272 0.254 2.166 H39 UY5 76 UY5 H40 H40 H 0 1 N N N -42.443 31.891 23.503 1.882 -0.133 1.722 H40 UY5 77 UY5 H41 H41 H 0 1 N N N -39.987 39.206 28.290 -6.879 -0.157 -3.603 H41 UY5 78 UY5 H42 H42 H 0 1 N N N -39.637 40.703 23.801 -9.230 1.897 -0.278 H42 UY5 79 UY5 H44 H44 H 0 1 N N N -45.843 35.602 26.193 -2.755 -2.644 0.065 H44 UY5 80 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal UY5 C23 C24 SING N N 1 UY5 C23 N22 SING N N 2 UY5 C21 N22 SING N N 3 UY5 C21 C20 SING N N 4 UY5 C24 C25 SING N N 5 UY5 C26 C25 SING N N 6 UY5 N22 C29 SING N N 7 UY5 C20 C19 DOUB Y N 8 UY5 C20 C30 SING Y N 9 UY5 C19 C18 SING Y N 10 UY5 C01 C02 SING N N 11 UY5 C29 C28 SING N N 12 UY5 C30 C31 DOUB Y N 13 UY5 C25 C28 SING N N 14 UY5 C25 C27 SING N N 15 UY5 C18 C17 DOUB Y N 16 UY5 C31 C17 SING Y N 17 UY5 C02 C03 SING N N 18 UY5 C02 N04 SING N N 19 UY5 C17 N15 SING N N 20 UY5 N15 C16 SING N N 21 UY5 N15 C14 SING N N 22 UY5 C16 C33 SING N N 23 UY5 N04 C05 SING N N 24 UY5 C10 C09 SING N N 25 UY5 C10 C13 SING N N 26 UY5 C09 N08 SING N N 27 UY5 C06 C05 DOUB Y N 28 UY5 C06 C07 SING Y N 29 UY5 C33 O34 DOUB N N 30 UY5 C33 N32 SING N N 31 UY5 C14 C13 SING N N 32 UY5 C05 N37 SING Y N 33 UY5 C13 N32 SING N N 34 UY5 C13 C12 SING N N 35 UY5 N08 C07 SING N N 36 UY5 N08 C11 SING N N 37 UY5 C07 N35 DOUB Y N 38 UY5 N37 C36 DOUB Y N 39 UY5 C12 C11 SING N N 40 UY5 N35 C36 SING Y N 41 UY5 C10 H1 SING N N 42 UY5 C10 H2 SING N N 43 UY5 C21 H3 SING N N 44 UY5 C21 H4 SING N N 45 UY5 C24 H5 SING N N 46 UY5 C24 H6 SING N N 47 UY5 C26 H7 SING N N 48 UY5 C26 H8 SING N N 49 UY5 C26 H9 SING N N 50 UY5 C28 H10 SING N N 51 UY5 C28 H11 SING N N 52 UY5 C01 H12 SING N N 53 UY5 C01 H13 SING N N 54 UY5 C01 H14 SING N N 55 UY5 C02 H15 SING N N 56 UY5 C03 H16 SING N N 57 UY5 C03 H17 SING N N 58 UY5 C03 H18 SING N N 59 UY5 C06 H19 SING N N 60 UY5 C09 H20 SING N N 61 UY5 C09 H21 SING N N 62 UY5 C11 H22 SING N N 63 UY5 C11 H23 SING N N 64 UY5 C12 H24 SING N N 65 UY5 C12 H25 SING N N 66 UY5 C14 H26 SING N N 67 UY5 C14 H27 SING N N 68 UY5 C16 H28 SING N N 69 UY5 C16 H29 SING N N 70 UY5 C18 H30 SING N N 71 UY5 C19 H31 SING N N 72 UY5 C23 H32 SING N N 73 UY5 C23 H33 SING N N 74 UY5 C27 H34 SING N N 75 UY5 C27 H35 SING N N 76 UY5 C27 H36 SING N N 77 UY5 C29 H37 SING N N 78 UY5 C29 H38 SING N N 79 UY5 C30 H39 SING N N 80 UY5 C31 H40 SING N N 81 UY5 C36 H41 SING N N 82 UY5 N04 H42 SING N N 83 UY5 N32 H44 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor UY5 InChI InChI 1.03 "InChI=1S/C29H43N7O/c1-22(2)32-25-17-26(31-21-30-25)35-15-11-29(12-16-35)20-36(19-27(37)33-29)24-7-5-23(6-8-24)18-34-13-9-28(3,4)10-14-34/h5-8,17,21-22H,9-16,18-20H2,1-4H3,(H,33,37)(H,30,31,32)" UY5 InChIKey InChI 1.03 HJOBOVGEKZTYKP-UHFFFAOYSA-N UY5 SMILES_CANONICAL CACTVS 3.385 "CC(C)Nc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4ccc(CN5CCC(C)(C)CC5)cc4" UY5 SMILES CACTVS 3.385 "CC(C)Nc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4ccc(CN5CCC(C)(C)CC5)cc4" UY5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Nc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4ccc(cc4)CN5CCC(CC5)(C)C" UY5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)Nc1cc(ncn1)N2CCC3(CC2)CN(CC(=O)N3)c4ccc(cc4)CN5CCC(CC5)(C)C" # _pdbx_chem_comp_identifier.comp_id UY5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[(4,4-dimethylpiperidin-1-yl)methyl]phenyl]-9-[6-(propan-2-ylamino)pyrimidin-4-yl]-1,4,9-triazaspiro[5.5]undecan-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site UY5 "Create component" 2021-03-26 PDBE UY5 "Initial release" 2021-09-15 RCSB ##