data_V1P # _chem_comp.id V1P _chem_comp.name "5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-15 _chem_comp.pdbx_modified_date 2020-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V1P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XEB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V1P O1 O1 O 0 1 N N N 76.606 32.556 -2.067 0.833 1.350 -0.515 O1 V1P 1 V1P C11 C1 C 0 1 N N N 76.591 31.983 -0.978 0.596 1.686 0.626 C11 V1P 2 V1P C12 C2 C 0 1 N N N 77.830 31.375 -0.352 0.704 3.136 1.023 C12 V1P 3 V1P C15 C3 C 0 1 N N N 79.107 32.167 -0.725 1.169 4.058 -0.119 C15 V1P 4 V1P N4 N1 N 0 1 N N N 79.506 31.005 -1.670 2.543 3.798 0.363 N4 V1P 5 V1P C14 C4 C 0 1 N N N 80.875 30.451 -1.468 3.341 5.031 0.369 C14 V1P 6 V1P C13 C5 C 0 1 N N N 78.351 30.121 -1.096 2.030 3.491 1.720 C13 V1P 7 V1P N3 N2 N 0 1 N N N 75.500 31.867 -0.216 0.231 0.763 1.538 N3 V1P 8 V1P C10 C6 C 0 1 N N S 74.220 32.455 -0.546 0.120 -0.645 1.151 C10 V1P 9 V1P C16 C7 C 0 1 N N N 73.093 31.529 -0.086 -0.924 -0.789 0.042 C16 V1P 10 V1P C17 C8 C 0 1 N N N 71.696 31.869 -0.589 -2.302 -0.409 0.586 C17 V1P 11 V1P C18 C9 C 0 1 N N N 70.655 30.879 -0.079 -3.346 -0.553 -0.523 C18 V1P 12 V1P C19 C10 C 0 1 N N N 69.232 31.003 -0.642 -4.724 -0.173 0.022 C19 V1P 13 V1P C20 C11 C 0 1 N N N 68.260 30.069 0.095 -5.768 -0.317 -1.087 C20 V1P 14 V1P C21 C12 C 0 1 N N N 66.889 29.852 -0.566 -7.147 0.063 -0.543 C21 V1P 15 V1P O3 O2 O 0 1 N N N 66.217 31.079 -0.732 -7.122 1.416 -0.084 O3 V1P 16 V1P C22 C13 C 0 1 N N N 66.031 28.906 0.274 -8.191 -0.080 -1.652 C22 V1P 17 V1P C23 C14 C 0 1 N N N 65.760 29.384 1.701 -9.569 0.299 -1.107 C23 V1P 18 V1P O2 O3 O 0 1 N N N 67.089 29.204 -1.805 -7.484 -0.802 0.544 O2 V1P 19 V1P C9 C15 C 0 1 Y N N 74.126 33.789 0.132 1.455 -1.135 0.651 C9 V1P 20 V1P C1 C16 C 0 1 Y N N 73.763 35.041 -0.312 1.859 -2.436 0.558 C1 V1P 21 V1P C C17 C 0 1 N N N 73.325 35.417 -1.674 1.064 -3.620 0.929 C V1P 22 V1P N N3 N 0 1 N N N 73.126 36.703 -1.918 1.587 -4.854 0.785 N V1P 23 V1P O O4 O 0 1 N N N 73.119 34.551 -2.531 -0.063 -3.484 1.364 O V1P 24 V1P N2 N4 N 0 1 Y N N 74.463 33.965 1.454 2.478 -0.369 0.205 N2 V1P 25 V1P C2 C18 C 0 1 Y N N 74.306 35.289 1.762 3.496 -1.209 -0.151 C2 V1P 26 V1P N1 N5 N 0 1 Y N N 73.886 35.974 0.705 3.115 -2.445 0.065 N1 V1P 27 V1P C3 C19 C 0 1 Y N N 74.559 35.858 3.100 4.809 -0.793 -0.692 C3 V1P 28 V1P C8 C20 C 0 1 Y N N 74.623 37.234 3.284 5.768 -1.752 -1.018 C8 V1P 29 V1P C7 C21 C 0 1 Y N N 74.850 37.763 4.545 6.990 -1.358 -1.522 C7 V1P 30 V1P C6 C22 C 0 1 Y N N 74.994 36.931 5.632 7.265 -0.014 -1.705 C6 V1P 31 V1P C5 C23 C 0 1 Y N N 74.932 35.563 5.462 6.318 0.942 -1.384 C5 V1P 32 V1P C4 C24 C 0 1 Y N N 74.723 35.026 4.200 5.090 0.560 -0.885 C4 V1P 33 V1P H1 H1 H 0 1 N N N 77.733 31.214 0.732 -0.179 3.500 1.548 H1 V1P 34 V1P H2 H2 H 0 1 N N N 79.801 32.331 0.112 0.970 3.659 -1.114 H2 V1P 35 V1P H3 H3 H 0 1 N N N 78.916 33.123 -1.235 0.850 5.094 -0.005 H3 V1P 36 V1P H5 H5 H 0 1 N N N 81.617 31.138 -1.902 4.188 4.913 1.045 H5 V1P 37 V1P H6 H6 H 0 1 N N N 81.068 30.336 -0.391 3.705 5.233 -0.638 H6 V1P 38 V1P H7 H7 H 0 1 N N N 80.950 29.471 -1.961 2.722 5.863 0.705 H7 V1P 39 V1P H8 H8 H 0 1 N N N 77.662 29.721 -1.855 1.964 4.361 2.373 H8 V1P 40 V1P H9 H9 H 0 1 N N N 78.685 29.305 -0.438 2.520 2.639 2.193 H9 V1P 41 V1P H10 H10 H 0 1 N N N 75.572 31.343 0.633 0.042 1.032 2.451 H10 V1P 42 V1P H11 H11 H 0 1 N N N 74.141 32.596 -1.634 -0.184 -1.236 2.015 H11 V1P 43 V1P H12 H12 H 0 1 N N N 73.068 31.551 1.014 -0.666 -0.129 -0.787 H12 V1P 44 V1P H13 H13 H 0 1 N N N 73.334 30.511 -0.427 -0.943 -1.821 -0.308 H13 V1P 45 V1P H14 H14 H 0 1 N N N 71.428 32.878 -0.242 -2.559 -1.069 1.415 H14 V1P 46 V1P H15 H15 H 0 1 N N N 71.699 31.848 -1.689 -2.283 0.623 0.936 H15 V1P 47 V1P H16 H16 H 0 1 N N N 70.590 31.000 1.012 -3.089 0.107 -1.352 H16 V1P 48 V1P H17 H17 H 0 1 N N N 71.017 29.867 -0.315 -3.365 -1.585 -0.872 H17 V1P 49 V1P H18 H18 H 0 1 N N N 68.889 32.042 -0.526 -4.982 -0.832 0.851 H18 V1P 50 V1P H19 H19 H 0 1 N N N 69.244 30.738 -1.710 -4.705 0.859 0.371 H19 V1P 51 V1P H20 H20 H 0 1 N N N 68.746 29.087 0.189 -5.511 0.343 -1.916 H20 V1P 52 V1P H21 H21 H 0 1 N N N 68.086 30.489 1.097 -5.787 -1.349 -1.437 H21 V1P 53 V1P H22 H22 H 0 1 N N N 66.096 31.492 0.115 -6.899 2.060 -0.771 H22 V1P 54 V1P H23 H23 H 0 1 N N N 65.064 28.779 -0.234 -7.933 0.579 -2.481 H23 V1P 55 V1P H24 H24 H 0 1 N N N 66.546 27.936 0.330 -8.210 -1.113 -2.001 H24 V1P 56 V1P H25 H25 H 0 1 N N N 65.139 28.643 2.225 -9.550 1.332 -0.758 H25 V1P 57 V1P H26 H26 H 0 1 N N N 66.714 29.505 2.234 -10.313 0.197 -1.898 H26 V1P 58 V1P H27 H27 H 0 1 N N N 65.232 30.349 1.670 -9.827 -0.360 -0.278 H27 V1P 59 V1P H28 H28 H 0 1 N N N 67.543 28.382 -1.663 -7.520 -1.738 0.305 H28 V1P 60 V1P H29 H29 H 0 1 N N N 72.800 36.997 -2.817 2.486 -4.963 0.438 H29 V1P 61 V1P H30 H30 H 0 1 N N N 73.302 37.380 -1.204 1.064 -5.634 1.030 H30 V1P 62 V1P H31 H31 H 0 1 N N N 74.770 33.249 2.081 2.487 0.599 0.147 H31 V1P 63 V1P H33 H33 H 0 1 N N N 74.495 37.895 2.440 5.555 -2.801 -0.875 H33 V1P 64 V1P H34 H34 H 0 1 N N N 74.914 38.833 4.675 7.734 -2.099 -1.775 H34 V1P 65 V1P H35 H35 H 0 1 N N N 75.155 37.348 6.615 8.223 0.289 -2.100 H35 V1P 66 V1P H36 H36 H 0 1 N N N 75.046 34.909 6.314 6.539 1.989 -1.528 H36 V1P 67 V1P H37 H37 H 0 1 N N N 74.688 33.954 4.072 4.349 1.307 -0.639 H37 V1P 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V1P O C DOUB N N 1 V1P O1 C11 DOUB N N 2 V1P N C SING N N 3 V1P O2 C21 SING N N 4 V1P C C1 SING N N 5 V1P N4 C14 SING N N 6 V1P N4 C13 SING N N 7 V1P N4 C15 SING N N 8 V1P C13 C12 SING N N 9 V1P C11 C12 SING N N 10 V1P C11 N3 SING N N 11 V1P O3 C21 SING N N 12 V1P C15 C12 SING N N 13 V1P C19 C18 SING N N 14 V1P C19 C20 SING N N 15 V1P C17 C16 SING N N 16 V1P C17 C18 SING N N 17 V1P C21 C20 SING N N 18 V1P C21 C22 SING N N 19 V1P C10 N3 SING N N 20 V1P C10 C16 SING N N 21 V1P C10 C9 SING N N 22 V1P C1 C9 DOUB Y N 23 V1P C1 N1 SING Y N 24 V1P C9 N2 SING Y N 25 V1P C22 C23 SING N N 26 V1P N1 C2 DOUB Y N 27 V1P N2 C2 SING Y N 28 V1P C2 C3 SING N N 29 V1P C3 C8 DOUB Y N 30 V1P C3 C4 SING Y N 31 V1P C8 C7 SING Y N 32 V1P C4 C5 DOUB Y N 33 V1P C7 C6 DOUB Y N 34 V1P C5 C6 SING Y N 35 V1P C12 H1 SING N N 36 V1P C15 H2 SING N N 37 V1P C15 H3 SING N N 38 V1P C14 H5 SING N N 39 V1P C14 H6 SING N N 40 V1P C14 H7 SING N N 41 V1P C13 H8 SING N N 42 V1P C13 H9 SING N N 43 V1P N3 H10 SING N N 44 V1P C10 H11 SING N N 45 V1P C16 H12 SING N N 46 V1P C16 H13 SING N N 47 V1P C17 H14 SING N N 48 V1P C17 H15 SING N N 49 V1P C18 H16 SING N N 50 V1P C18 H17 SING N N 51 V1P C19 H18 SING N N 52 V1P C19 H19 SING N N 53 V1P C20 H20 SING N N 54 V1P C20 H21 SING N N 55 V1P O3 H22 SING N N 56 V1P C22 H23 SING N N 57 V1P C22 H24 SING N N 58 V1P C23 H25 SING N N 59 V1P C23 H26 SING N N 60 V1P C23 H27 SING N N 61 V1P O2 H28 SING N N 62 V1P N H29 SING N N 63 V1P N H30 SING N N 64 V1P N2 H31 SING N N 65 V1P C8 H33 SING N N 66 V1P C7 H34 SING N N 67 V1P C6 H35 SING N N 68 V1P C5 H36 SING N N 69 V1P C4 H37 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V1P SMILES ACDLabs 12.01 "O=C(C1CN(C)C1)NC(CCCCCC(CC)(O)O)c3nc(c2ccccc2)nc3C(N)=O" V1P InChI InChI 1.03 "InChI=1S/C24H35N5O4/c1-3-24(32,33)13-9-5-8-12-18(26-23(31)17-14-29(2)15-17)19-20(21(25)30)28-22(27-19)16-10-6-4-7-11-16/h4,6-7,10-11,17-18,32-33H,3,5,8-9,12-15H2,1-2H3,(H2,25,30)(H,26,31)(H,27,28)/t18-/m0/s1" V1P InChIKey InChI 1.03 MYVMGGDKZVVQFO-SFHVURJKSA-N V1P SMILES_CANONICAL CACTVS 3.385 "CCC(O)(O)CCCCC[C@H](NC(=O)C1CN(C)C1)c2[nH]c(nc2C(N)=O)c3ccccc3" V1P SMILES CACTVS 3.385 "CCC(O)(O)CCCCC[CH](NC(=O)C1CN(C)C1)c2[nH]c(nc2C(N)=O)c3ccccc3" V1P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(CCCCC[C@@H](c1c(nc([nH]1)c2ccccc2)C(=O)N)NC(=O)C3CN(C3)C)(O)O" V1P SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CCCCCC(c1c(nc([nH]1)c2ccccc2)C(=O)N)NC(=O)C3CN(C3)C)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V1P "SYSTEMATIC NAME" ACDLabs 12.01 "5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide" V1P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(1~{S})-1-[(1-methylazetidin-3-yl)carbonylamino]-7,7-bis(oxidanyl)nonyl]-2-phenyl-1~{H}-imidazole-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V1P "Create component" 2020-06-15 RCSB V1P "Initial release" 2020-08-12 RCSB ##