data_V4Y # _chem_comp.id V4Y _chem_comp.name "7-{[3-({[3-(6-aminopyridin-2-yl)propyl]amino}methyl)phenoxy]methyl}quinolin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-26 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V4Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XK5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V4Y C02 C1 C 0 1 Y N N 87.579 99.405 82.392 7.918 2.612 0.426 C02 V4Y 1 V4Y C03 C2 C 0 1 Y N N 86.387 98.841 82.011 9.235 2.232 0.666 C03 V4Y 2 V4Y C04 C3 C 0 1 Y N N 85.236 99.456 82.356 9.675 1.003 0.210 C04 V4Y 3 V4Y C05 C4 C 0 1 Y N N 85.273 100.653 83.096 8.779 0.191 -0.474 C05 V4Y 4 V4Y C06 C5 C 0 1 Y N N 86.468 101.192 83.474 7.487 0.631 -0.677 C06 V4Y 5 V4Y C07 C6 C 0 1 N N N 86.339 102.477 84.295 6.510 -0.246 -1.417 C07 V4Y 6 V4Y C08 C7 C 0 1 N N N 87.484 103.543 84.216 5.265 -0.463 -0.556 C08 V4Y 7 V4Y C09 C8 C 0 1 N N N 87.720 104.237 85.496 4.273 -1.354 -1.308 C09 V4Y 8 V4Y C11 C9 C 0 1 N N N 89.523 105.546 86.368 2.101 -2.414 -1.172 C11 V4Y 9 V4Y C12 C10 C 0 1 Y N N 89.464 106.606 85.302 0.890 -2.605 -0.295 C12 V4Y 10 V4Y C13 C11 C 0 1 Y N N 90.300 106.556 84.164 0.842 -3.660 0.596 C13 V4Y 11 V4Y C14 C12 C 0 1 Y N N 90.206 107.561 83.160 -0.265 -3.835 1.406 C14 V4Y 12 V4Y C15 C13 C 0 1 Y N N 89.302 108.584 83.298 -1.326 -2.954 1.326 C15 V4Y 13 V4Y C16 C14 C 0 1 Y N N 88.444 108.633 84.440 -1.280 -1.894 0.433 C16 V4Y 14 V4Y C18 C15 C 0 1 N N N 86.553 109.906 83.566 -3.434 -1.265 1.219 C18 V4Y 15 V4Y C19 C16 C 0 1 Y N N 85.510 110.951 84.060 -4.485 -0.210 0.990 C19 V4Y 16 V4Y C20 C17 C 0 1 Y N N 85.077 111.974 83.201 -4.447 0.968 1.733 C20 V4Y 17 V4Y C21 C18 C 0 1 Y N N 84.128 112.915 83.618 -5.383 1.941 1.550 C21 V4Y 18 V4Y C22 C19 C 0 1 Y N N 83.603 112.804 84.961 -6.399 1.755 0.600 C22 V4Y 19 V4Y C23 C20 C 0 1 Y N N 82.635 113.774 85.399 -7.385 2.740 0.382 C23 V4Y 20 V4Y C24 C21 C 0 1 Y N N 82.103 113.669 86.685 -8.343 2.497 -0.555 C24 V4Y 21 V4Y C25 C22 C 0 1 Y N N 82.523 112.611 87.516 -8.330 1.292 -1.273 C25 V4Y 22 V4Y C28 C23 C 0 1 Y N N 83.999 111.787 85.789 -6.440 0.559 -0.157 C28 V4Y 23 V4Y C29 C24 C 0 1 Y N N 84.979 110.841 85.366 -5.454 -0.419 0.058 C29 V4Y 24 V4Y C30 C25 C 0 1 Y N N 88.555 107.631 85.437 -0.169 -1.721 -0.379 C30 V4Y 25 V4Y N01 N1 N 0 1 N N N 88.703 98.697 81.984 7.465 3.847 0.874 N01 V4Y 26 V4Y N10 N2 N 0 1 N N N 89.112 104.307 85.752 3.077 -1.562 -0.481 N10 V4Y 27 V4Y N26 N3 N 0 1 N N N 81.961 112.479 88.830 -9.312 1.059 -2.223 N26 V4Y 28 V4Y N27 N4 N 0 1 Y N N 83.447 111.711 87.085 -7.406 0.376 -1.064 N27 V4Y 29 V4Y N31 N5 N 0 1 Y N N 87.604 100.573 83.110 7.095 1.809 -0.229 N31 V4Y 30 V4Y O17 O1 O 0 1 N N N 87.471 109.682 84.652 -2.323 -1.026 0.353 O17 V4Y 31 V4Y H1 H1 H 0 1 N N N 86.370 97.921 81.445 9.905 2.889 1.201 H1 V4Y 32 V4Y H2 H2 H 0 1 N N N 84.287 99.030 82.065 10.692 0.682 0.381 H2 V4Y 33 V4Y H3 H3 H 0 1 N N N 84.351 101.147 83.366 9.091 -0.775 -0.844 H3 V4Y 34 V4Y H4 H4 H 0 1 N N N 85.412 102.974 83.973 6.226 0.236 -2.352 H4 V4Y 35 V4Y H5 H5 H 0 1 N N N 86.248 102.179 85.350 6.976 -1.208 -1.631 H5 V4Y 36 V4Y H6 H6 H 0 1 N N N 88.413 103.037 83.916 5.549 -0.945 0.380 H6 V4Y 37 V4Y H7 H7 H 0 1 N N N 87.213 104.292 83.457 4.799 0.499 -0.342 H7 V4Y 38 V4Y H8 H8 H 0 1 N N N 87.307 105.255 85.442 3.989 -0.871 -2.243 H8 V4Y 39 V4Y H9 H9 H 0 1 N N N 87.226 103.684 86.308 4.739 -2.316 -1.522 H9 V4Y 40 V4Y H10 H10 H 0 1 N N N 90.549 105.454 86.754 2.551 -3.383 -1.385 H10 V4Y 41 V4Y H11 H11 H 0 1 N N N 88.843 105.802 87.194 1.801 -1.939 -2.107 H11 V4Y 42 V4Y H12 H12 H 0 1 N N N 91.013 105.752 84.055 1.671 -4.350 0.659 H12 V4Y 43 V4Y H13 H13 H 0 1 N N N 90.845 107.518 82.291 -0.300 -4.660 2.102 H13 V4Y 44 V4Y H14 H14 H 0 1 N N N 89.239 109.353 82.543 -2.191 -3.091 1.959 H14 V4Y 45 V4Y H15 H15 H 0 1 N N N 86.048 108.966 83.298 -3.101 -1.228 2.256 H15 V4Y 46 V4Y H16 H16 H 0 1 N N N 87.092 110.295 82.690 -3.855 -2.248 1.007 H16 V4Y 47 V4Y H17 H17 H 0 1 N N N 85.483 112.036 82.202 -3.665 1.112 2.465 H17 V4Y 48 V4Y H18 H18 H 0 1 N N N 83.797 113.701 82.956 -5.343 2.849 2.132 H18 V4Y 49 V4Y H19 H19 H 0 1 N N N 82.324 114.573 84.742 -7.380 3.662 0.944 H19 V4Y 50 V4Y H20 H20 H 0 1 N N N 81.379 114.389 87.038 -9.112 3.231 -0.745 H20 V4Y 51 V4Y H21 H21 H 0 1 N N N 85.309 110.056 86.030 -5.468 -1.336 -0.513 H21 V4Y 52 V4Y H22 H22 H 0 1 N N N 87.921 107.672 86.310 -0.129 -0.894 -1.072 H22 V4Y 53 V4Y H23 H23 H 0 1 N N N 89.527 99.171 82.295 6.549 4.117 0.706 H23 V4Y 54 V4Y H24 H24 H 0 1 N N N 88.679 97.778 82.377 8.064 4.438 1.355 H24 V4Y 55 V4Y H25 H25 H 0 1 N N N 89.360 103.553 86.361 3.322 -1.948 0.418 H25 V4Y 56 V4Y H27 H27 H 0 1 N N N 82.357 111.681 89.284 -9.998 1.726 -2.386 H27 V4Y 57 V4Y H28 H28 H 0 1 N N N 82.164 113.300 89.363 -9.313 0.229 -2.726 H28 V4Y 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V4Y N01 C02 SING N N 1 V4Y C03 C04 DOUB Y N 2 V4Y C03 C02 SING Y N 3 V4Y C04 C05 SING Y N 4 V4Y C02 N31 DOUB Y N 5 V4Y C05 C06 DOUB Y N 6 V4Y N31 C06 SING Y N 7 V4Y C14 C15 DOUB Y N 8 V4Y C14 C13 SING Y N 9 V4Y C20 C21 DOUB Y N 10 V4Y C20 C19 SING Y N 11 V4Y C15 C16 SING Y N 12 V4Y C06 C07 SING N N 13 V4Y C18 C19 SING N N 14 V4Y C18 O17 SING N N 15 V4Y C21 C22 SING Y N 16 V4Y C19 C29 DOUB Y N 17 V4Y C13 C12 DOUB Y N 18 V4Y C08 C07 SING N N 19 V4Y C08 C09 SING N N 20 V4Y C16 O17 SING N N 21 V4Y C16 C30 DOUB Y N 22 V4Y C22 C23 DOUB Y N 23 V4Y C22 C28 SING Y N 24 V4Y C12 C30 SING Y N 25 V4Y C12 C11 SING N N 26 V4Y C29 C28 SING Y N 27 V4Y C23 C24 SING Y N 28 V4Y C09 N10 SING N N 29 V4Y N10 C11 SING N N 30 V4Y C28 N27 DOUB Y N 31 V4Y C24 C25 DOUB Y N 32 V4Y N27 C25 SING Y N 33 V4Y C25 N26 SING N N 34 V4Y C03 H1 SING N N 35 V4Y C04 H2 SING N N 36 V4Y C05 H3 SING N N 37 V4Y C07 H4 SING N N 38 V4Y C07 H5 SING N N 39 V4Y C08 H6 SING N N 40 V4Y C08 H7 SING N N 41 V4Y C09 H8 SING N N 42 V4Y C09 H9 SING N N 43 V4Y C11 H10 SING N N 44 V4Y C11 H11 SING N N 45 V4Y C13 H12 SING N N 46 V4Y C14 H13 SING N N 47 V4Y C15 H14 SING N N 48 V4Y C18 H15 SING N N 49 V4Y C18 H16 SING N N 50 V4Y C20 H17 SING N N 51 V4Y C21 H18 SING N N 52 V4Y C23 H19 SING N N 53 V4Y C24 H20 SING N N 54 V4Y C29 H21 SING N N 55 V4Y C30 H22 SING N N 56 V4Y N01 H23 SING N N 57 V4Y N01 H24 SING N N 58 V4Y N10 H25 SING N N 59 V4Y N26 H27 SING N N 60 V4Y N26 H28 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V4Y SMILES ACDLabs 12.01 "c1(nc(ccc1)CCCNCc2cc(ccc2)OCc3cc4c(cc3)ccc(N)n4)N" V4Y InChI InChI 1.03 "InChI=1S/C25H27N5O/c26-24-8-2-5-21(29-24)6-3-13-28-16-18-4-1-7-22(14-18)31-17-19-9-10-20-11-12-25(27)30-23(20)15-19/h1-2,4-5,7-12,14-15,28H,3,6,13,16-17H2,(H2,26,29)(H2,27,30)" V4Y InChIKey InChI 1.03 YWEAUSOYABUBID-UHFFFAOYSA-N V4Y SMILES_CANONICAL CACTVS 3.385 "Nc1cccc(CCCNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1" V4Y SMILES CACTVS 3.385 "Nc1cccc(CCCNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1" V4Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCCCc4cccc(n4)N" V4Y SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCCCc4cccc(n4)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V4Y "SYSTEMATIC NAME" ACDLabs 12.01 "7-{[3-({[3-(6-aminopyridin-2-yl)propyl]amino}methyl)phenoxy]methyl}quinolin-2-amine" V4Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[[3-[[3-(6-azanylpyridin-2-yl)propylamino]methyl]phenoxy]methyl]quinolin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V4Y "Create component" 2020-06-26 RCSB V4Y "Initial release" 2021-06-30 RCSB ##