data_V5D # _chem_comp.id V5D _chem_comp.name "7-{[3-({[4-(6-aminopyridin-2-yl)butyl]amino}methyl)phenoxy]methyl}quinolin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-26 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.541 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V5D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XK4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V5D C02 C1 C 0 1 Y N N 82.692 112.837 88.646 9.876 0.812 -0.398 C02 V5D 1 V5D C03 C2 C 0 1 Y N N 82.352 113.981 87.913 10.285 2.125 -0.606 C03 V5D 2 V5D C04 C3 C 0 1 Y N N 82.745 114.106 86.584 9.420 3.157 -0.290 C04 V5D 3 V5D C05 C4 C 0 1 Y N N 83.483 113.069 86.017 8.170 2.840 0.225 C05 V5D 4 V5D C06 C5 C 0 1 Y N N 83.813 111.941 86.793 7.830 1.514 0.406 C06 V5D 5 V5D C07 C6 C 0 1 N N N 84.611 110.795 86.188 6.475 1.163 0.964 C07 V5D 6 V5D C08 C7 C 0 1 N N N 85.935 111.208 85.448 5.762 0.204 0.009 C08 V5D 7 V5D C09 C8 C 0 1 N N N 87.081 110.172 85.707 4.386 -0.152 0.576 C09 V5D 8 V5D C10 C9 C 0 1 N N N 88.059 110.044 84.498 3.673 -1.111 -0.380 C10 V5D 9 V5D C12 C10 C 0 1 N N N 89.744 108.616 83.732 1.637 -2.374 -0.729 C12 V5D 10 V5D C13 C11 C 0 1 Y N N 90.116 107.152 83.484 0.290 -2.701 -0.139 C13 V5D 11 V5D C14 C12 C 0 1 Y N N 90.507 106.727 82.187 0.153 -3.781 0.714 C14 V5D 12 V5D C15 C13 C 0 1 Y N N 90.844 105.382 81.965 -1.082 -4.084 1.258 C15 V5D 13 V5D C16 C14 C 0 1 Y N N 90.795 104.449 83.039 -2.182 -3.308 0.948 C16 V5D 14 V5D C17 C15 C 0 1 Y N N 90.404 104.874 84.334 -2.048 -2.225 0.093 C17 V5D 15 V5D C19 C16 C 0 1 N N N 89.174 103.909 86.192 -4.374 -1.830 0.384 C19 V5D 16 V5D C20 C17 C 0 1 Y N N 88.177 102.877 85.581 -5.450 -0.876 -0.067 C20 V5D 17 V5D C21 C18 C 0 1 Y N N 86.808 103.092 85.694 -6.179 -1.160 -1.219 C21 V5D 18 V5D C22 C19 C 0 1 Y N N 85.898 102.159 85.141 -7.158 -0.317 -1.652 C22 V5D 19 V5D C23 C20 C 0 1 Y N N 86.390 100.993 84.467 -7.436 0.853 -0.929 C23 V5D 20 V5D C24 C21 C 0 1 Y N N 85.470 100.048 83.907 -8.441 1.750 -1.346 C24 V5D 21 V5D C25 C22 C 0 1 Y N N 85.972 98.929 83.262 -8.660 2.868 -0.598 C25 V5D 22 V5D C26 C23 C 0 1 Y N N 87.362 98.752 83.175 -7.893 3.099 0.553 C26 V5D 23 V5D C29 C24 C 0 1 Y N N 87.732 100.786 84.361 -6.696 1.144 0.243 C29 V5D 24 V5D C30 C25 C 0 1 Y N N 88.655 101.731 84.921 -5.697 0.248 0.661 C30 V5D 25 V5D C31 C26 C 0 1 Y N N 90.067 106.214 84.556 -0.806 -1.919 -0.446 C31 V5D 26 V5D N01 N1 N 0 1 N N N 82.290 112.700 90.010 10.736 -0.235 -0.711 N01 V5D 27 V5D N11 N2 N 0 1 N N N 88.493 108.677 84.370 2.352 -1.453 0.164 N11 V5D 28 V5D N27 N3 N 0 1 N N N 87.883 97.623 82.523 -8.128 4.241 1.304 N27 V5D 29 V5D N28 N4 N 0 1 Y N N 88.199 99.663 83.714 -6.956 2.257 0.938 N28 V5D 30 V5D N32 N5 N 0 1 Y N N 83.412 111.847 88.061 8.678 0.550 0.101 N32 V5D 31 V5D O18 O1 O 0 1 N N N 90.361 103.911 85.425 -3.129 -1.460 -0.212 O18 V5D 32 V5D H1 H1 H 0 1 N N N 81.782 114.770 88.381 11.265 2.336 -1.009 H1 V5D 33 V5D H2 H2 H 0 1 N N N 82.485 114.982 86.008 9.710 4.186 -0.440 H2 V5D 34 V5D H3 H3 H 0 1 N N N 83.801 113.130 84.987 7.471 3.622 0.482 H3 V5D 35 V5D H4 H4 H 0 1 N N N 83.965 110.278 85.463 6.595 0.684 1.936 H4 V5D 36 V5D H5 H5 H 0 1 N N N 84.879 110.103 87.000 5.882 2.071 1.077 H5 V5D 37 V5D H6 H6 H 0 1 N N N 86.256 112.195 85.812 5.642 0.683 -0.963 H6 V5D 38 V5D H7 H7 H 0 1 N N N 85.739 111.262 84.367 6.354 -0.704 -0.104 H7 V5D 39 V5D H8 H8 H 0 1 N N N 86.629 109.188 85.900 4.507 -0.631 1.548 H8 V5D 40 V5D H9 H9 H 0 1 N N N 87.653 110.493 86.590 3.794 0.756 0.689 H9 V5D 41 V5D H10 H10 H 0 1 N N N 88.933 110.691 84.664 3.553 -0.632 -1.352 H10 V5D 42 V5D H11 H11 H 0 1 N N N 87.544 110.352 83.576 4.266 -2.019 -0.493 H11 V5D 43 V5D H12 H12 H 0 1 N N N 90.506 109.085 84.372 2.216 -3.290 -0.844 H12 V5D 44 V5D H13 H13 H 0 1 N N N 89.693 109.150 82.771 1.503 -1.904 -1.703 H13 V5D 45 V5D H14 H14 H 0 1 N N N 90.545 107.436 81.373 1.012 -4.389 0.957 H14 V5D 46 V5D H15 H15 H 0 1 N N N 91.140 105.055 80.979 -1.186 -4.927 1.923 H15 V5D 47 V5D H16 H16 H 0 1 N N N 91.056 103.415 82.867 -3.147 -3.546 1.372 H16 V5D 48 V5D H17 H17 H 0 1 N N N 89.406 103.628 87.230 -4.284 -1.789 1.469 H17 V5D 49 V5D H18 H18 H 0 1 N N N 88.723 104.912 86.176 -4.636 -2.843 0.079 H18 V5D 50 V5D H19 H19 H 0 1 N N N 86.439 103.970 86.203 -5.966 -2.059 -1.777 H19 V5D 51 V5D H20 H20 H 0 1 N N N 84.834 102.325 85.227 -7.716 -0.547 -2.548 H20 V5D 52 V5D H21 H21 H 0 1 N N N 84.404 100.205 83.986 -9.022 1.556 -2.235 H21 V5D 53 V5D H22 H22 H 0 1 N N N 85.301 98.201 82.831 -9.422 3.574 -0.891 H22 V5D 54 V5D H23 H23 H 0 1 N N N 89.718 101.562 84.836 -5.123 0.453 1.552 H23 V5D 55 V5D H24 H24 H 0 1 N N N 89.769 106.538 85.542 -0.698 -1.073 -1.109 H24 V5D 56 V5D H25 H25 H 0 1 N N N 82.621 111.827 90.369 11.616 -0.048 -1.073 H25 V5D 57 V5D H26 H26 H 0 1 N N N 82.676 113.450 90.548 10.455 -1.152 -0.568 H26 V5D 58 V5D H27 H27 H 0 1 N N N 87.823 108.168 83.830 1.807 -0.622 0.339 H27 V5D 59 V5D H29 H29 H 0 1 N N N 88.882 97.653 82.551 -8.815 4.869 1.031 H29 V5D 60 V5D H30 H30 H 0 1 N N N 87.562 96.795 82.982 -7.604 4.413 2.103 H30 V5D 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V5D C15 C14 DOUB Y N 1 V5D C15 C16 SING Y N 2 V5D C14 C13 SING Y N 3 V5D N27 C26 SING N N 4 V5D C16 C17 DOUB Y N 5 V5D C26 C25 DOUB Y N 6 V5D C26 N28 SING Y N 7 V5D C25 C24 SING Y N 8 V5D C13 C12 SING N N 9 V5D C13 C31 DOUB Y N 10 V5D N28 C29 DOUB Y N 11 V5D C12 N11 SING N N 12 V5D C24 C23 DOUB Y N 13 V5D C17 C31 SING Y N 14 V5D C17 O18 SING N N 15 V5D C29 C23 SING Y N 16 V5D C29 C30 SING Y N 17 V5D N11 C10 SING N N 18 V5D C23 C22 SING Y N 19 V5D C10 C09 SING N N 20 V5D C30 C20 DOUB Y N 21 V5D C22 C21 DOUB Y N 22 V5D O18 C19 SING N N 23 V5D C08 C09 SING N N 24 V5D C08 C07 SING N N 25 V5D C20 C21 SING Y N 26 V5D C20 C19 SING N N 27 V5D C05 C04 DOUB Y N 28 V5D C05 C06 SING Y N 29 V5D C07 C06 SING N N 30 V5D C04 C03 SING Y N 31 V5D C06 N32 DOUB Y N 32 V5D C03 C02 DOUB Y N 33 V5D N32 C02 SING Y N 34 V5D C02 N01 SING N N 35 V5D C03 H1 SING N N 36 V5D C04 H2 SING N N 37 V5D C05 H3 SING N N 38 V5D C07 H4 SING N N 39 V5D C07 H5 SING N N 40 V5D C08 H6 SING N N 41 V5D C08 H7 SING N N 42 V5D C09 H8 SING N N 43 V5D C09 H9 SING N N 44 V5D C10 H10 SING N N 45 V5D C10 H11 SING N N 46 V5D C12 H12 SING N N 47 V5D C12 H13 SING N N 48 V5D C14 H14 SING N N 49 V5D C15 H15 SING N N 50 V5D C16 H16 SING N N 51 V5D C19 H17 SING N N 52 V5D C19 H18 SING N N 53 V5D C21 H19 SING N N 54 V5D C22 H20 SING N N 55 V5D C24 H21 SING N N 56 V5D C25 H22 SING N N 57 V5D C30 H23 SING N N 58 V5D C31 H24 SING N N 59 V5D N01 H25 SING N N 60 V5D N01 H26 SING N N 61 V5D N11 H27 SING N N 62 V5D N27 H29 SING N N 63 V5D N27 H30 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V5D SMILES ACDLabs 12.01 "c1(N)cccc(n1)CCCCNCc2cc(ccc2)OCc4ccc3ccc(nc3c4)N" V5D InChI InChI 1.03 "InChI=1S/C26H29N5O/c27-25-9-4-7-22(30-25)6-1-2-14-29-17-19-5-3-8-23(15-19)32-18-20-10-11-21-12-13-26(28)31-24(21)16-20/h3-5,7-13,15-16,29H,1-2,6,14,17-18H2,(H2,27,30)(H2,28,31)" V5D InChIKey InChI 1.03 QYKBESYQSCLLGR-UHFFFAOYSA-N V5D SMILES_CANONICAL CACTVS 3.385 "Nc1cccc(CCCCNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1" V5D SMILES CACTVS 3.385 "Nc1cccc(CCCCNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1" V5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCCCCc4cccc(n4)N" V5D SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCCCCc4cccc(n4)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V5D "SYSTEMATIC NAME" ACDLabs 12.01 "7-{[3-({[4-(6-aminopyridin-2-yl)butyl]amino}methyl)phenoxy]methyl}quinolin-2-amine" V5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[[3-[[4-(6-azanylpyridin-2-yl)butylamino]methyl]phenoxy]methyl]quinolin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V5D "Create component" 2020-06-26 RCSB V5D "Initial release" 2021-06-30 RCSB ##