data_V5M # _chem_comp.id V5M _chem_comp.name "(2E)-3-{4-hydroxy-3-[(E)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]-5-methoxyphenyl}prop-2-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-30 _chem_comp.pdbx_modified_date 2021-05-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 342.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XM7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V5M C02 C1 C 0 1 Y N N 21.011 8.910 33.442 -5.801 0.259 -0.010 C02 V5M 1 V5M C03 C2 C 0 1 Y N N 21.445 9.816 32.456 -5.046 1.423 -0.011 C03 V5M 2 V5M C04 C3 C 0 1 Y N N 22.293 10.823 32.873 -3.669 1.355 -0.008 C04 V5M 3 V5M C05 C4 C 0 1 Y N N 22.623 11.013 34.261 -3.030 0.112 -0.005 C05 V5M 4 V5M C06 C5 C 0 1 N N N 23.637 11.965 34.601 -1.559 0.038 -0.002 C06 V5M 5 V5M C07 C6 C 0 1 N N N 24.514 11.901 35.569 -0.829 1.165 -0.002 C07 V5M 6 V5M C08 C7 C 0 1 Y N N 25.737 12.594 35.898 0.642 1.091 0.001 C08 V5M 7 V5M C09 C8 C 0 1 Y N N 26.237 13.663 35.127 1.406 2.268 0.006 C09 V5M 8 V5M C11 C9 C 0 1 Y N N 27.472 14.256 35.301 2.796 2.196 0.010 C11 V5M 9 V5M C13 C10 C 0 1 N N N 29.229 15.557 34.256 4.955 3.193 0.018 C13 V5M 10 V5M C14 C11 C 0 1 Y N N 28.355 13.683 36.244 3.428 0.968 0.007 C14 V5M 11 V5M C15 C12 C 0 1 Y N N 28.016 12.525 37.008 2.674 -0.212 0.001 C15 V5M 12 V5M C16 C13 C 0 1 N N N 28.953 11.856 38.058 3.350 -1.518 -0.002 C16 V5M 13 V5M C17 C14 C 0 1 N N N 30.084 12.256 38.611 4.700 -1.579 0.002 C17 V5M 14 V5M C18 C15 C 0 1 N N N 30.975 11.463 39.707 5.352 -2.838 -0.001 C18 V5M 15 V5M C21 C16 C 0 1 Y N N 26.735 12.014 36.724 1.279 -0.148 0.004 C21 V5M 16 V5M C22 C17 C 0 1 Y N N 22.233 9.950 35.121 -3.791 -1.060 -0.005 C22 V5M 17 V5M C23 C18 C 0 1 Y N N 21.371 8.957 34.742 -5.172 -0.984 -0.007 C23 V5M 18 V5M C25 C19 C 0 1 N N N 21.190 8.007 36.953 -5.203 -3.362 -0.004 C25 V5M 19 V5M O01 O1 O 0 1 N N N 20.200 7.888 33.044 -7.159 0.331 -0.007 O01 V5M 20 V5M O10 O2 O 0 1 N N N 25.375 14.258 34.172 0.789 3.477 0.008 O10 V5M 21 V5M O12 O3 O 0 1 N N N 27.835 15.356 34.567 3.534 3.339 0.015 O12 V5M 22 V5M O19 O4 O 0 1 N N N 32.070 12.020 40.024 4.696 -3.863 -0.007 O19 V5M 23 V5M O20 O5 O 0 1 N N N 30.536 10.405 40.113 6.700 -2.899 0.002 O20 V5M 24 V5M O24 O6 O 0 1 N N N 20.905 7.967 35.558 -5.915 -2.123 -0.007 O24 V5M 25 V5M H031 H1 H 0 0 N N N 21.131 9.728 31.426 -5.539 2.384 -0.014 H031 V5M 26 V5M H041 H2 H 0 0 N N N 22.721 11.487 32.136 -3.084 2.263 -0.009 H041 V5M 27 V5M H061 H3 H 0 0 N N N 23.683 12.847 33.980 -1.067 -0.924 0.000 H061 V5M 28 V5M H071 H4 H 0 0 N N N 24.262 11.147 36.300 -1.321 2.127 -0.005 H071 V5M 29 V5M H131 H5 H 0 0 N N N 29.345 16.478 33.666 5.421 4.178 0.022 H131 V5M 30 V5M H132 H6 H 0 0 N N N 29.804 15.645 35.190 5.262 2.642 0.907 H132 V5M 31 V5M H133 H7 H 0 0 N N N 29.602 14.701 33.675 5.267 2.648 -0.873 H133 V5M 32 V5M H141 H8 H 0 0 N N N 29.323 14.138 36.393 4.507 0.918 0.010 H141 V5M 33 V5M H161 H9 H 0 0 N N N 28.616 10.887 38.396 2.768 -2.427 -0.007 H161 V5M 34 V5M H171 H10 H 0 0 N N N 30.456 13.220 38.297 5.282 -0.669 0.006 H171 V5M 35 V5M H211 H11 H 0 0 N N N 26.483 11.072 37.188 0.695 -1.057 0.003 H211 V5M 36 V5M H221 H12 H 0 0 N N N 22.637 9.925 36.122 -3.302 -2.023 -0.002 H221 V5M 37 V5M H251 H13 H 0 0 N N N 20.737 7.134 37.446 -5.914 -4.189 -0.004 H251 V5M 38 V5M H252 H14 H 0 0 N N N 22.279 7.989 37.105 -4.576 -3.423 -0.892 H252 V5M 39 V5M H253 H15 H 0 0 N N N 20.774 8.929 37.386 -4.578 -3.420 0.887 H253 V5M 40 V5M H011 H16 H 0 0 N N N 19.977 7.350 33.794 -7.549 0.355 0.877 H011 V5M 41 V5M H101 H17 H 0 0 N N N 24.559 13.772 34.135 0.612 3.830 -0.875 H101 V5M 42 V5M H1 H18 H 0 1 N N N 31.148 10.024 40.732 7.053 -3.800 -0.000 H1 V5M 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V5M C03 C04 DOUB Y N 1 V5M C03 C02 SING Y N 2 V5M C04 C05 SING Y N 3 V5M O01 C02 SING N N 4 V5M C02 C23 DOUB Y N 5 V5M O10 C09 SING N N 6 V5M C13 O12 SING N N 7 V5M C05 C06 SING N N 8 V5M C05 C22 DOUB Y N 9 V5M O12 C11 SING N N 10 V5M C06 C07 DOUB N E 11 V5M C23 C22 SING Y N 12 V5M C23 O24 SING N N 13 V5M C09 C11 DOUB Y N 14 V5M C09 C08 SING Y N 15 V5M C11 C14 SING Y N 16 V5M O24 C25 SING N N 17 V5M C07 C08 SING N N 18 V5M C08 C21 DOUB Y N 19 V5M C14 C15 DOUB Y N 20 V5M C21 C15 SING Y N 21 V5M C15 C16 SING N N 22 V5M C16 C17 DOUB N E 23 V5M C17 C18 SING N N 24 V5M C18 O19 DOUB N N 25 V5M C18 O20 SING N N 26 V5M C03 H031 SING N N 27 V5M C04 H041 SING N N 28 V5M C06 H061 SING N N 29 V5M C07 H071 SING N N 30 V5M C13 H131 SING N N 31 V5M C13 H132 SING N N 32 V5M C13 H133 SING N N 33 V5M C14 H141 SING N N 34 V5M C16 H161 SING N N 35 V5M C17 H171 SING N N 36 V5M C21 H211 SING N N 37 V5M C22 H221 SING N N 38 V5M C25 H251 SING N N 39 V5M C25 H252 SING N N 40 V5M C25 H253 SING N N 41 V5M O01 H011 SING N N 42 V5M O10 H101 SING N N 43 V5M O20 H1 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V5M SMILES ACDLabs 12.01 "c1(c(cc(cc1)\C=C\c2cc(cc(c2O)OC)\C=C\C(=O)O)OC)O" V5M InChI InChI 1.03 "InChI=1S/C19H18O6/c1-24-16-10-12(4-7-15(16)20)3-6-14-9-13(5-8-18(21)22)11-17(25-2)19(14)23/h3-11,20,23H,1-2H3,(H,21,22)/b6-3+,8-5+" V5M InChIKey InChI 1.03 SLIMCXCSQXYCGL-JENUQAQBSA-N V5M SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1O)\C=C\c2cc(\C=C\C(O)=O)cc(OC)c2O" V5M SMILES CACTVS 3.385 "COc1cc(ccc1O)C=Cc2cc(C=CC(O)=O)cc(OC)c2O" V5M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1O)/C=C/c2cc(cc(c2O)OC)/C=C/C(=O)O" V5M SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccc1O)C=Cc2cc(cc(c2O)OC)C=CC(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V5M "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-3-{4-hydroxy-3-[(E)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]-5-methoxyphenyl}prop-2-enoic acid" V5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-3-[3-methoxy-5-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]-4-oxidanyl-phenyl]prop-2-enoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V5M "Create component" 2020-06-30 RCSB V5M "Initial release" 2021-05-12 RCSB ##