data_V6H # _chem_comp.id V6H _chem_comp.name "2-[[2,5-bis(fluoranyl)phenyl]methylamino]-4-(cyclopentylamino)-N-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 F2 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.531 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V6H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OAM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V6H C1 C1 C 0 1 N N N -6.431 21.212 12.478 4.289 0.697 0.146 C1 V6H 1 V6H C2 C2 C 0 1 N N N -5.961 21.507 11.071 5.214 -0.499 -0.091 C2 V6H 2 V6H C3 C3 C 0 1 N N N -5.176 20.381 10.415 6.671 -0.037 -0.031 C3 V6H 3 V6H C4 C4 C 0 1 N N N -3.549 21.780 9.004 8.036 -1.609 -1.577 C4 V6H 4 V6H C5 C5 C 0 1 N N N -2.066 22.075 9.154 8.548 -3.053 -1.382 C5 V6H 5 V6H C7 C6 C 0 1 N N N -2.688 20.238 10.576 8.034 -1.976 0.716 C7 V6H 6 V6H C9 C7 C 0 1 Y N N -8.564 23.730 14.969 0.176 -0.657 0.078 C9 V6H 7 V6H F1 F1 F 0 1 N N N -14.532 23.684 17.718 -5.216 -1.541 -2.411 F1 V6H 8 V6H C17 C8 C 0 1 Y N N -13.688 23.038 18.546 -5.873 -1.934 -1.298 C17 V6H 9 V6H C16 C9 C 0 1 Y N N -14.131 21.909 19.184 -7.245 -2.119 -1.332 C16 V6H 10 V6H C15 C10 C 0 1 Y N N -13.256 21.220 20.003 -7.917 -2.521 -0.194 C15 V6H 11 V6H C14 C11 C 0 1 Y N N -11.986 21.706 20.144 -7.219 -2.739 0.981 C14 V6H 12 V6H F F2 F 0 1 N N N -11.116 21.011 20.911 -7.876 -3.132 2.095 F V6H 13 V6H C13 C12 C 0 1 Y N N -11.537 22.846 19.522 -5.847 -2.555 1.016 C13 V6H 14 V6H C12 C13 C 0 1 Y N N -12.410 23.540 18.693 -5.174 -2.158 -0.124 C12 V6H 15 V6H C11 C14 C 0 1 N N N -12.003 24.827 18.031 -3.680 -1.964 -0.088 C11 V6H 16 V6H N3 N1 N 0 1 N N N -10.674 24.933 17.450 -3.377 -0.537 0.046 N3 V6H 17 V6H C10 C15 C 0 1 Y N N -10.220 24.173 16.436 -2.065 -0.113 0.101 C10 V6H 18 V6H N2 N2 N 0 1 Y N N -9.004 24.479 15.978 -1.094 -1.015 0.030 N2 V6H 19 V6H N4 N3 N 0 1 Y N N -10.999 23.175 16.007 -1.814 1.182 0.222 N4 V6H 20 V6H C18 C16 C 0 1 Y N N -10.531 22.394 15.015 -0.565 1.628 0.289 C18 V6H 21 V6H N5 N4 N 0 1 N N N -11.291 21.360 14.609 -0.307 2.977 0.416 N5 V6H 22 V6H C19 C17 C 0 1 N N N -11.147 19.998 15.107 -1.411 3.940 0.381 C19 V6H 23 V6H C23 C18 C 0 1 N N N -11.703 19.848 16.514 -1.015 5.223 1.132 C23 V6H 24 V6H C22 C19 C 0 1 N N N -13.193 19.584 16.310 -1.082 6.373 0.105 C22 V6H 25 V6H C21 C20 C 0 1 N N N -13.374 19.165 14.863 -2.062 5.858 -0.978 C21 V6H 26 V6H C20 C21 C 0 1 N N N -11.978 19.011 14.305 -1.705 4.354 -1.075 C20 V6H 27 V6H C8 C22 C 0 1 Y N N -9.259 22.655 14.429 0.495 0.699 0.211 C8 V6H 28 V6H C C23 C 0 1 N N N -8.639 21.903 13.289 1.897 1.143 0.269 C V6H 29 V6H O O1 O 0 1 N N N -9.289 21.058 12.680 2.156 2.313 0.481 O V6H 30 V6H N N5 N 0 1 N N N -7.382 22.209 12.947 2.894 0.255 0.088 N V6H 31 V6H N1 N6 N 0 1 N N N -3.808 20.768 10.041 7.556 -1.182 -0.258 N1 V6H 32 V6H O1 O2 O 0 1 N N N -2.674 19.359 11.428 7.799 -1.843 1.899 O1 V6H 33 V6H C6 C24 C 0 1 N N N -1.493 20.901 9.942 8.906 -3.060 0.123 C6 V6H 34 V6H H1 H1 H 0 1 N N N -6.914 20.224 12.493 4.494 1.126 1.127 H1 V6H 35 V6H H2 H2 H 0 1 N N N -5.561 21.205 13.151 4.464 1.449 -0.623 H2 V6H 36 V6H H3 H3 H 0 1 N N N -5.318 22.399 11.104 5.039 -1.251 0.678 H3 V6H 37 V6H H4 H4 H 0 1 N N N -6.845 21.715 10.451 5.009 -0.928 -1.072 H4 V6H 38 V6H H5 H5 H 0 1 N N N -5.710 20.066 9.507 6.846 0.716 -0.800 H5 V6H 39 V6H H6 H6 H 0 1 N N N -5.120 19.538 11.119 6.876 0.392 0.950 H6 V6H 40 V6H H7 H7 H 0 1 N N N -4.149 22.685 9.180 8.848 -0.963 -1.911 H7 V6H 41 V6H H8 H8 H 0 1 N N N -3.771 21.382 8.003 7.219 -1.593 -2.299 H8 V6H 42 V6H H9 H9 H 0 1 N N N -1.587 22.145 8.167 7.764 -3.778 -1.600 H9 V6H 43 V6H H10 H10 H 0 1 N N N -1.915 23.016 9.703 9.431 -3.240 -1.993 H10 V6H 44 V6H H11 H11 H 0 1 N N N -7.603 23.974 14.542 0.957 -1.400 0.020 H11 V6H 45 V6H H12 H12 H 0 1 N N N -15.145 21.564 19.049 -7.790 -1.948 -2.249 H12 V6H 46 V6H H13 H13 H 0 1 N N N -13.567 20.323 20.517 -8.987 -2.665 -0.221 H13 V6H 47 V6H H14 H14 H 0 1 N N N -10.526 23.195 19.674 -5.303 -2.724 1.933 H14 V6H 48 V6H H15 H15 H 0 1 N N N -12.087 25.620 18.789 -3.264 -2.505 0.761 H15 V6H 49 V6H H16 H16 H 0 1 N N N -12.724 25.015 17.222 -3.242 -2.343 -1.011 H16 V6H 50 V6H H17 H17 H 0 1 N N N -10.038 24.780 18.206 -4.098 0.110 0.097 H17 V6H 51 V6H H18 H18 H 0 1 N N N -12.235 21.623 14.808 0.604 3.288 0.528 H18 V6H 52 V6H H19 H19 H 0 1 N N N -10.091 19.691 15.092 -2.302 3.503 0.833 H19 V6H 53 V6H H20 H20 H 0 1 N N N -11.226 19.003 17.033 -1.713 5.410 1.947 H20 V6H 54 V6H H21 H21 H 0 1 N N N -11.547 20.770 17.094 -0.001 5.129 1.522 H21 V6H 55 V6H H22 H22 H 0 1 N N N -13.770 20.498 16.514 -1.469 7.279 0.571 H22 V6H 56 V6H H23 H23 H 0 1 N N N -13.530 18.780 16.981 -0.098 6.558 -0.326 H23 V6H 57 V6H H24 H24 H 0 1 N N N -13.927 19.936 14.307 -3.096 5.990 -0.657 H24 V6H 58 V6H H25 H25 H 0 1 N N N -13.918 18.211 14.805 -1.888 6.362 -1.928 H25 V6H 59 V6H H26 H26 H 0 1 N N N -11.611 17.984 14.449 -0.822 4.212 -1.699 H26 V6H 60 V6H H27 H27 H 0 1 N N N -11.956 19.261 13.234 -2.548 3.787 -1.471 H27 V6H 61 V6H H28 H28 H 0 1 N N N -7.084 23.161 13.016 2.687 -0.678 -0.081 H28 V6H 62 V6H H29 H29 H 0 1 N N N -0.973 20.201 9.271 8.668 -4.027 0.567 H29 V6H 63 V6H H30 H30 H 0 1 N N N -0.794 21.257 10.713 9.960 -2.823 0.265 H30 V6H 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V6H C4 C5 SING N N 1 V6H C4 N1 SING N N 2 V6H C5 C6 SING N N 3 V6H C6 C7 SING N N 4 V6H N1 C3 SING N N 5 V6H N1 C7 SING N N 6 V6H C3 C2 SING N N 7 V6H C7 O1 DOUB N N 8 V6H C2 C1 SING N N 9 V6H C1 N SING N N 10 V6H O C DOUB N N 11 V6H N C SING N N 12 V6H C C8 SING N N 13 V6H C20 C21 SING N N 14 V6H C20 C19 SING N N 15 V6H C8 C9 DOUB Y N 16 V6H C8 C18 SING Y N 17 V6H N5 C18 SING N N 18 V6H N5 C19 SING N N 19 V6H C21 C22 SING N N 20 V6H C9 N2 SING Y N 21 V6H C18 N4 DOUB Y N 22 V6H C19 C23 SING N N 23 V6H N2 C10 DOUB Y N 24 V6H N4 C10 SING Y N 25 V6H C22 C23 SING N N 26 V6H C10 N3 SING N N 27 V6H N3 C11 SING N N 28 V6H F1 C17 SING N N 29 V6H C11 C12 SING N N 30 V6H C17 C12 DOUB Y N 31 V6H C17 C16 SING Y N 32 V6H C12 C13 SING Y N 33 V6H C16 C15 DOUB Y N 34 V6H C13 C14 DOUB Y N 35 V6H C15 C14 SING Y N 36 V6H C14 F SING N N 37 V6H C1 H1 SING N N 38 V6H C1 H2 SING N N 39 V6H C2 H3 SING N N 40 V6H C2 H4 SING N N 41 V6H C3 H5 SING N N 42 V6H C3 H6 SING N N 43 V6H C4 H7 SING N N 44 V6H C4 H8 SING N N 45 V6H C5 H9 SING N N 46 V6H C5 H10 SING N N 47 V6H C9 H11 SING N N 48 V6H C16 H12 SING N N 49 V6H C15 H13 SING N N 50 V6H C13 H14 SING N N 51 V6H C11 H15 SING N N 52 V6H C11 H16 SING N N 53 V6H N3 H17 SING N N 54 V6H N5 H18 SING N N 55 V6H C19 H19 SING N N 56 V6H C23 H20 SING N N 57 V6H C23 H21 SING N N 58 V6H C22 H22 SING N N 59 V6H C22 H23 SING N N 60 V6H C21 H24 SING N N 61 V6H C21 H25 SING N N 62 V6H C20 H26 SING N N 63 V6H C20 H27 SING N N 64 V6H N H28 SING N N 65 V6H C6 H29 SING N N 66 V6H C6 H30 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V6H InChI InChI 1.03 "InChI=1S/C24H30F2N6O2/c25-17-8-9-20(26)16(13-17)14-28-24-29-15-19(22(31-24)30-18-5-1-2-6-18)23(34)27-10-4-12-32-11-3-7-21(32)33/h8-9,13,15,18H,1-7,10-12,14H2,(H,27,34)(H2,28,29,30,31)" V6H InChIKey InChI 1.03 CGCYACANDHXNLI-UHFFFAOYSA-N V6H SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(F)c(CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2)c1" V6H SMILES CACTVS 3.385 "Fc1ccc(F)c(CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2)c1" V6H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1F)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O)F" V6H SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1F)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O)F" # _pdbx_chem_comp_identifier.comp_id V6H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[2,5-bis(fluoranyl)phenyl]methylamino]-4-(cyclopentylamino)-~{N}-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V6H "Create component" 2021-04-20 PDBE V6H "Initial release" 2021-05-19 RCSB ##