data_V8H # _chem_comp.id V8H _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 N2 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-28 _chem_comp.pdbx_modified_date 2022-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 548.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V8H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7OCQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V8H O7N O1 O 0 1 N N N 59.282 13.586 -16.175 ? ? ? O7N V8H 1 V8H C7N C1 C 0 1 N N N 58.451 12.789 -16.577 ? ? ? C7N V8H 2 V8H N7N N1 N 0 1 N N N 57.165 12.887 -16.239 ? ? ? N7N V8H 3 V8H C3N C2 C 0 1 N N N 58.884 11.665 -17.470 ? ? ? C3N V8H 4 V8H C2N C3 C 0 1 N N N 58.526 10.365 -17.138 ? ? ? C2N V8H 5 V8H C4N C4 C 0 1 N N N 59.692 11.955 -18.716 ? ? ? C4N V8H 6 V8H C5N C5 C 0 1 N N N 60.019 10.741 -19.455 ? ? ? C5N V8H 7 V8H C6N C6 C 0 1 N N N 59.604 9.485 -19.022 ? ? ? C6N V8H 8 V8H N1N N2 N 0 1 N N N 58.886 9.321 -17.899 ? ? ? N1N V8H 9 V8H C1D C7 C 0 1 N N R 58.488 7.965 -17.498 ? ? ? C1D V8H 10 V8H O4D O2 O 0 1 N N N 57.067 7.850 -17.401 ? ? ? O4D V8H 11 V8H C2D C8 C 0 1 N N R 59.053 7.593 -16.129 ? ? ? C2D V8H 12 V8H O2D O3 O 0 1 N N N 60.179 6.719 -16.260 ? ? ? O2D V8H 13 V8H C3D C9 C 0 1 N N S 57.903 6.936 -15.384 ? ? ? C3D V8H 14 V8H O3D O4 O 0 1 N N N 58.234 5.608 -14.968 ? ? ? O3D V8H 15 V8H C4D C10 C 0 1 N N R 56.736 6.922 -16.364 ? ? ? C4D V8H 16 V8H C5D C11 C 0 1 N N N 55.407 7.287 -15.710 ? ? ? C5D V8H 17 V8H O5D O5 O 0 1 N N N 55.461 8.608 -15.176 ? ? ? O5D V8H 18 V8H PN P1 P 0 1 N N N 54.284 9.158 -14.224 ? ? ? PN V8H 19 V8H O1N O6 O 0 1 N N N 54.829 10.297 -13.395 ? ? ? O1N V8H 20 V8H O2N O7 O 0 1 N N N 53.140 9.627 -15.090 ? ? ? O2N V8H 21 V8H O3 O8 O 0 1 N N N 53.766 7.984 -13.244 ? ? ? O3 V8H 22 V8H PA P2 P 0 1 N N N 52.662 8.241 -12.094 ? ? ? PA V8H 23 V8H O1A O9 O 0 1 N N N 53.132 7.603 -10.810 ? ? ? O1A V8H 24 V8H O2A O10 O 0 1 N N N 52.458 9.724 -11.884 ? ? ? O2A V8H 25 V8H O5B O11 O 0 1 N N N 51.255 7.587 -12.528 ? ? ? O5B V8H 26 V8H C5B C12 C 0 1 N N N 51.021 6.182 -12.450 ? ? ? C5B V8H 27 V8H C4B C13 C 0 1 N N R 49.521 5.914 -12.515 ? ? ? C4B V8H 28 V8H C3B C14 C 0 1 N N S 48.807 6.372 -11.251 ? ? ? C3B V8H 29 V8H O3B O12 O 0 1 N N N 47.696 7.211 -11.586 ? ? ? O3B V8H 30 V8H C2B C15 C 0 1 N N R 48.363 5.103 -10.542 ? ? ? C2B V8H 31 V8H O2B O13 O 0 1 N N N 46.961 5.122 -10.251 ? ? ? O2B V8H 32 V8H C1B C16 C 0 1 N N R 48.702 3.951 -11.479 ? ? ? C1B V8H 33 V8H O4B O14 O 0 1 N N N 49.283 4.511 -12.660 ? ? ? O4B V8H 34 V8H O1 O15 O 0 1 N N N 49.629 3.055 -10.855 ? ? ? O1 V8H 35 V8H H1 H1 H 0 1 N N N 56.860 13.628 -15.641 ? ? ? H1 V8H 36 V8H H2 H2 H 0 1 N N N 56.505 12.219 -16.583 ? ? ? H2 V8H 37 V8H H3 H3 H 0 1 N N N 57.944 10.190 -16.245 ? ? ? H3 V8H 38 V8H H4 H4 H 0 1 N N N 60.627 12.455 -18.423 ? ? ? H4 V8H 39 V8H H5 H5 H 0 1 N N N 60.599 10.819 -20.363 ? ? ? H5 V8H 40 V8H H6 H6 H 0 1 N N N 59.867 8.616 -19.607 ? ? ? H6 V8H 41 V8H H7 H7 H 0 1 N N N 58.868 7.245 -18.237 ? ? ? H7 V8H 42 V8H H8 H8 H 0 1 N N N 59.344 8.513 -15.601 ? ? ? H8 V8H 43 V8H H9 H9 H 0 1 N N N 60.513 6.501 -15.398 ? ? ? H9 V8H 44 V8H H10 H10 H 0 1 N N N 57.636 7.555 -14.515 ? ? ? H10 V8H 45 V8H H11 H11 H 0 1 N N N 58.962 5.639 -14.359 ? ? ? H11 V8H 46 V8H H12 H12 H 0 1 N N N 56.649 5.910 -16.786 ? ? ? H12 V8H 47 V8H H13 H13 H 0 1 N N N 54.606 7.233 -16.462 ? ? ? H13 V8H 48 V8H H14 H14 H 0 1 N N N 55.196 6.576 -14.898 ? ? ? H14 V8H 49 V8H H15 H15 H 0 1 N N N 54.340 11.089 -13.584 ? ? ? H15 V8H 50 V8H H16 H16 H 0 1 N N N 53.203 8.266 -10.134 ? ? ? H16 V8H 51 V8H H17 H17 H 0 1 N N N 51.520 5.679 -13.291 ? ? ? H17 V8H 52 V8H H18 H18 H 0 1 N N N 51.422 5.795 -11.502 ? ? ? H18 V8H 53 V8H H19 H19 H 0 1 N N N 49.102 6.458 -13.375 ? ? ? H19 V8H 54 V8H H20 H20 H 0 1 N N N 49.518 6.914 -10.611 ? ? ? H20 V8H 55 V8H H21 H21 H 0 1 N N N 47.258 7.491 -10.790 ? ? ? H21 V8H 56 V8H H22 H22 H 0 1 N N N 48.942 4.990 -9.614 ? ? ? H22 V8H 57 V8H H23 H23 H 0 1 N N N 46.768 5.846 -9.666 ? ? ? H23 V8H 58 V8H H24 H24 H 0 1 N N N 47.775 3.416 -11.732 ? ? ? H24 V8H 59 V8H H25 H25 H 0 1 N N N 49.236 2.687 -10.072 ? ? ? H25 V8H 60 V8H H26 H26 H 0 1 N N N 59.109 12.621 -19.369 ? ? ? H26 V8H 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V8H C5N C6N DOUB N N 1 V8H C5N C4N SING N N 2 V8H C6N N1N SING N N 3 V8H C4N C3N SING N N 4 V8H N1N C1D SING N N 5 V8H N1N C2N SING N N 6 V8H C1D O4D SING N N 7 V8H C1D C2D SING N N 8 V8H C3N C2N DOUB N N 9 V8H C3N C7N SING N N 10 V8H O4D C4D SING N N 11 V8H C7N N7N SING N N 12 V8H C7N O7N DOUB N N 13 V8H C4D C5D SING N N 14 V8H C4D C3D SING N N 15 V8H O2D C2D SING N N 16 V8H C2D C3D SING N N 17 V8H C5D O5D SING N N 18 V8H C3D O3D SING N N 19 V8H O5D PN SING N N 20 V8H O2N PN DOUB N N 21 V8H PN O1N SING N N 22 V8H PN O3 SING N N 23 V8H O3 PA SING N N 24 V8H O4B C4B SING N N 25 V8H O4B C1B SING N N 26 V8H O5B C5B SING N N 27 V8H O5B PA SING N N 28 V8H C4B C5B SING N N 29 V8H C4B C3B SING N N 30 V8H PA O2A DOUB N N 31 V8H PA O1A SING N N 32 V8H O3B C3B SING N N 33 V8H C1B O1 SING N N 34 V8H C1B C2B SING N N 35 V8H C3B C2B SING N N 36 V8H C2B O2B SING N N 37 V8H N7N H1 SING N N 38 V8H N7N H2 SING N N 39 V8H C2N H3 SING N N 40 V8H C4N H4 SING N N 41 V8H C5N H5 SING N N 42 V8H C6N H6 SING N N 43 V8H C1D H7 SING N N 44 V8H C2D H8 SING N N 45 V8H O2D H9 SING N N 46 V8H C3D H10 SING N N 47 V8H O3D H11 SING N N 48 V8H C4D H12 SING N N 49 V8H C5D H13 SING N N 50 V8H C5D H14 SING N N 51 V8H O1N H15 SING N N 52 V8H O1A H16 SING N N 53 V8H C5B H17 SING N N 54 V8H C5B H18 SING N N 55 V8H C4B H19 SING N N 56 V8H C3B H20 SING N N 57 V8H O3B H21 SING N N 58 V8H C2B H22 SING N N 59 V8H O2B H23 SING N N 60 V8H C1B H24 SING N N 61 V8H O1 H25 SING N N 62 V8H C4N H26 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V8H InChI InChI 1.03 "InChI=1S/C16H26N2O15P2/c17-14(23)7-2-1-3-18(4-7)15-12(21)10(19)8(31-15)5-29-34(25,26)33-35(27,28)30-6-9-11(20)13(22)16(24)32-9/h1,3-4,8-13,15-16,19-22,24H,2,5-6H2,(H2,17,23)(H,25,26)(H,27,28)/t8-,9-,10-,11-,12-,13-,15-,16-/m1/s1" V8H InChIKey InChI 1.03 CORMEBAPIXUNEL-UDOSWUQBSA-N V8H SMILES_CANONICAL CACTVS 3.385 "NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@@H](O)[C@H](O)[C@@H]3O)[C@@H](O)[C@H]2O" V8H SMILES CACTVS 3.385 "NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O)[CH](O)[CH]2O" V8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1C=CN(C=C1C(=O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)O)O)O)O)O" V8H SMILES "OpenEye OEToolkits" 2.0.7 "C1C=CN(C=C1C(=O)N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id V8H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V8H "Create component" 2021-04-28 PDBE V8H "Other modification" 2021-04-29 PDBE V8H "Initial release" 2022-04-20 RCSB ##