data_VB0 # _chem_comp.id VB0 _chem_comp.name "5-(2-cyclopropylethynyl)-6-(2-fluorophenyl)pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H13 F N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-01 _chem_comp.pdbx_modified_date 2024-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 268.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VB0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8COW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VB0 C10 C1 C 0 1 Y N N N N N 21.577 5.867 7.094 -1.158 1.063 -1.119 C10 VB0 1 VB0 C13 C2 C 0 1 N N N N N N 23.377 9.241 11.336 -3.145 -2.386 0.285 C13 VB0 2 VB0 C15 C3 C 0 1 N N N N N N 22.855 10.625 10.985 -4.204 -1.640 -0.527 C15 VB0 3 VB0 C01 C4 C 0 1 Y N N N N N 18.919 3.970 10.213 3.264 -0.260 -0.229 C01 VB0 4 VB0 C02 C5 C 0 1 Y N N N N N 20.204 5.734 9.207 1.013 0.259 -0.195 C02 VB0 5 VB0 C03 C6 C 0 1 Y N N N N N 20.688 6.067 10.493 0.715 -1.105 -0.025 C03 VB0 6 VB0 C04 C7 C 0 1 Y N N N N N 20.197 5.298 11.533 1.787 -2.016 0.036 C04 VB0 7 VB0 C05 C8 C 0 1 Y N N N N N 20.603 6.442 7.900 -0.072 1.263 -0.266 C05 VB0 8 VB0 C06 C9 C 0 1 Y N N N N N 19.975 7.617 7.522 -0.014 2.417 0.520 C06 VB0 9 VB0 C07 C10 C 0 1 Y N N N N N 20.350 8.249 6.330 -1.031 3.350 0.447 C07 VB0 10 VB0 C08 C11 C 0 1 Y N N N N N 21.343 7.682 5.528 -2.103 3.143 -0.401 C08 VB0 11 VB0 C09 C12 C 0 1 Y N N N N N 21.956 6.493 5.911 -2.163 2.006 -1.185 C09 VB0 12 VB0 C11 C13 C 0 1 N N N N N N 21.650 7.225 10.737 -0.641 -1.555 0.084 C11 VB0 13 VB0 C12 C14 C 0 1 N N N N N N 22.412 8.096 11.007 -1.752 -1.924 0.173 C12 VB0 14 VB0 C14 C15 C 0 1 N N N N N N 23.923 9.957 10.111 -4.141 -1.464 0.991 C14 VB0 15 VB0 F01 F1 F 0 1 N N N N N N 19.006 8.173 8.310 1.034 2.619 1.349 F01 VB0 16 VB0 N01 N1 N 0 1 Y N N N N N 19.362 4.288 11.434 3.028 -1.555 -0.069 N01 VB0 17 VB0 N02 N2 N 0 1 Y N N N N N 19.372 4.704 9.188 2.288 0.631 -0.291 N02 VB0 18 VB0 N03 N3 N 0 1 N N N N N N 20.659 5.617 12.872 1.552 -3.369 0.202 N03 VB0 19 VB0 N04 N4 N 0 1 N N N N N N 17.980 2.885 10.032 4.574 0.173 -0.327 N04 VB0 20 VB0 H1 H1 H 0 1 N N N N N N 22.039 4.935 7.385 -1.209 0.173 -1.729 H1 VB0 21 VB0 H2 H2 H 0 1 N N N N N N 24.030 9.134 12.215 -3.274 -3.461 0.415 H2 VB0 22 VB0 H3 H3 H 0 1 N N N N N N 23.119 11.489 11.613 -3.870 -0.806 -1.145 H3 VB0 23 VB0 H4 H4 H 0 1 N N N N N N 21.830 10.747 10.605 -5.031 -2.223 -0.933 H4 VB0 24 VB0 H5 H5 H 0 1 N N N N N N 19.873 9.171 6.032 -0.988 4.243 1.054 H5 VB0 25 VB0 H6 H6 H 0 1 N N N N N N 21.636 8.167 4.609 -2.893 3.878 -0.457 H6 VB0 26 VB0 H7 H7 H 0 1 N N N N N N 22.725 6.057 5.291 -3.004 1.850 -1.846 H7 VB0 27 VB0 H8 H8 H 0 1 N N N N N N 23.665 9.599 9.103 -4.926 -1.932 1.585 H8 VB0 28 VB0 H9 H9 H 0 1 N N N N N N 24.954 10.341 10.111 -3.765 -0.515 1.373 H9 VB0 29 VB0 H10 H10 H 0 1 N N N N N N 20.245 4.985 13.527 0.642 -3.697 0.278 H10 VB0 30 VB0 H11 H11 H 0 1 N N N N N N 21.655 5.532 12.910 2.296 -3.989 0.242 H11 VB0 31 VB0 H12 H12 H 0 1 N N N N N N 17.753 2.798 9.062 5.302 -0.466 -0.280 H12 VB0 32 VB0 H13 H13 H 0 1 N N N N N N 18.390 2.032 10.356 4.765 1.117 -0.444 H13 VB0 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VB0 C08 C09 DOUB Y N 1 VB0 C08 C07 SING Y N 2 VB0 C09 C10 SING Y N 3 VB0 C07 C06 DOUB Y N 4 VB0 C10 C05 DOUB Y N 5 VB0 C06 C05 SING Y N 6 VB0 C06 F01 SING N N 7 VB0 C05 C02 SING N N 8 VB0 N02 C02 DOUB Y N 9 VB0 N02 C01 SING Y N 10 VB0 C02 C03 SING Y N 11 VB0 N04 C01 SING N N 12 VB0 C14 C15 SING N N 13 VB0 C14 C13 SING N N 14 VB0 C01 N01 DOUB Y N 15 VB0 C03 C11 SING N N 16 VB0 C03 C04 DOUB Y N 17 VB0 C11 C12 TRIP N N 18 VB0 C15 C13 SING N N 19 VB0 C12 C13 SING N N 20 VB0 N01 C04 SING Y N 21 VB0 C04 N03 SING N N 22 VB0 C10 H1 SING N N 23 VB0 C13 H2 SING N N 24 VB0 C15 H3 SING N N 25 VB0 C15 H4 SING N N 26 VB0 C07 H5 SING N N 27 VB0 C08 H6 SING N N 28 VB0 C09 H7 SING N N 29 VB0 C14 H8 SING N N 30 VB0 C14 H9 SING N N 31 VB0 N03 H10 SING N N 32 VB0 N03 H11 SING N N 33 VB0 N04 H12 SING N N 34 VB0 N04 H13 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VB0 InChI InChI 1.06 "InChI=1S/C15H13FN4/c16-12-4-2-1-3-10(12)13-11(8-7-9-5-6-9)14(17)20-15(18)19-13/h1-4,9H,5-6H2,(H4,17,18,19,20)" VB0 InChIKey InChI 1.06 GKZUWPJVDMAAMZ-UHFFFAOYSA-N VB0 SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c(C#CC2CC2)c(n1)c3ccccc3F" VB0 SMILES CACTVS 3.385 "Nc1nc(N)c(C#CC2CC2)c(n1)c3ccccc3F" VB0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2c(c(nc(n2)N)N)C#CC3CC3)F" VB0 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2c(c(nc(n2)N)N)C#CC3CC3)F" # _pdbx_chem_comp_identifier.comp_id VB0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(2-cyclopropylethynyl)-6-(2-fluorophenyl)pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VB0 "Create component" 2023-03-01 PDBE VB0 "Initial release" 2024-03-13 RCSB #