data_VB7 # _chem_comp.id VB7 _chem_comp.name "{(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 N4 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-22 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.616 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VB7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XOH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VB7 C5 C1 C 0 1 Y N N 39.870 -2.159 26.847 0.403 5.415 -0.980 C5 VB7 1 VB7 C7 C2 C 0 1 Y N N 39.794 -2.962 29.028 -1.370 4.671 0.285 C7 VB7 2 VB7 C8 C3 C 0 1 Y N N 38.571 -3.542 28.714 -0.750 3.424 0.403 C8 VB7 3 VB7 C13 C4 C 0 1 Y N N 40.200 -6.102 32.121 -3.198 -0.720 0.121 C13 VB7 4 VB7 C17 C5 C 0 1 Y N N 41.523 -8.222 31.802 -5.450 -1.678 0.358 C17 VB7 5 VB7 C20 C6 C 0 1 N N N 44.079 -6.867 31.938 -4.385 -4.215 -0.048 C20 VB7 6 VB7 C22 C7 C 0 1 Y N N 40.325 -8.942 31.926 -5.964 -0.457 0.766 C22 VB7 7 VB7 C24 C8 C 0 1 Y N N 41.329 -10.820 30.792 -8.149 -1.133 0.067 C24 VB7 8 VB7 C26 C9 C 0 1 N N N 34.826 -3.017 26.036 2.793 0.427 -1.043 C26 VB7 9 VB7 C28 C10 C 0 1 N N S 34.118 -4.931 24.674 4.437 1.060 0.616 C28 VB7 10 VB7 C23 C11 C 0 1 Y N N 40.228 -10.239 31.428 -7.310 -0.184 0.621 C23 VB7 11 VB7 C25 C12 C 0 1 Y N N 42.530 -10.107 30.679 -7.639 -2.351 -0.336 C25 VB7 12 VB7 C18 C13 C 0 1 Y N N 42.657 -8.801 31.180 -6.287 -2.623 -0.196 C18 VB7 13 VB7 C19 C14 C 0 1 N N N 44.035 -8.103 31.006 -5.764 -3.959 -0.659 C19 VB7 14 VB7 O21 O1 O 0 1 N N N 42.774 -6.125 31.878 -3.572 -3.054 -0.255 O21 VB7 15 VB7 C16 C15 C 0 1 N N R 41.579 -6.791 32.378 -3.977 -1.940 0.539 C16 VB7 16 VB7 C12 C16 C 0 1 Y N N 39.818 -5.549 30.935 -2.700 0.183 1.029 C12 VB7 17 VB7 C14 C17 C 0 1 Y N N 39.261 -6.043 33.086 -2.936 -0.439 -1.162 C14 VB7 18 VB7 S15 S1 S 0 1 Y N N 37.886 -5.248 32.436 -2.038 1.005 -1.300 S15 VB7 19 VB7 C11 C18 C 0 1 Y N N 38.569 -5.014 30.924 -2.023 1.220 0.445 C11 VB7 20 VB7 C9 C19 C 0 1 N N N 37.823 -4.319 29.741 -1.386 2.329 1.159 C9 VB7 21 VB7 O10 O2 O 0 1 N N N 36.609 -4.435 29.571 -1.382 2.346 2.377 O10 VB7 22 VB7 N6 N1 N 0 1 Y N N 40.427 -2.281 28.067 -0.769 5.622 -0.410 N6 VB7 23 VB7 N4 N2 N 0 1 Y N N 38.694 -2.721 26.539 1.032 4.261 -0.895 N4 VB7 24 VB7 C3 C20 C 0 1 Y N N 38.000 -3.432 27.428 0.502 3.245 -0.221 C3 VB7 25 VB7 N2 N3 N 0 1 N N N 36.806 -3.995 27.175 1.165 2.038 -0.134 N2 VB7 26 VB7 C1 C21 C 0 1 N N R 36.024 -3.961 25.895 2.514 1.902 -0.688 C1 VB7 27 VB7 C29 C22 C 0 1 N N N 35.319 -5.341 25.577 3.560 2.304 0.367 C29 VB7 28 VB7 O32 O3 O 0 1 N N N 34.388 -4.930 23.229 5.801 1.441 0.808 O32 VB7 29 VB7 C27 C23 C 0 1 N N R 33.815 -3.443 24.984 4.285 0.221 -0.681 C27 VB7 30 VB7 C30 C24 C 0 1 N N N 32.374 -3.249 25.450 4.580 -1.256 -0.409 C30 VB7 31 VB7 O31 O4 O 0 1 N N N 31.439 -3.500 24.407 5.960 -1.411 -0.071 O31 VB7 32 VB7 S33 S2 S 0 1 N N N 30.071 -4.071 24.644 6.368 -2.848 0.221 S33 VB7 33 VB7 O35 O5 O 0 1 N N N 29.309 -4.144 23.366 7.694 -2.793 0.728 O35 VB7 34 VB7 O36 O6 O 0 1 N N N 30.286 -5.406 25.244 5.287 -3.435 0.933 O36 VB7 35 VB7 N34 N4 N 0 1 N N N 29.251 -2.972 25.532 6.454 -3.638 -1.231 N34 VB7 36 VB7 H1 H1 H 0 1 N N N 40.389 -1.589 26.091 0.861 6.218 -1.539 H1 VB7 37 VB7 H2 H2 H 0 1 N N N 40.219 -3.058 30.016 -2.329 4.853 0.746 H2 VB7 38 VB7 H3 H3 H 0 1 N N N 44.262 -7.197 32.971 -4.487 -4.401 1.021 H3 VB7 39 VB7 H4 H4 H 0 1 N N N 44.892 -6.199 31.617 -3.927 -5.080 -0.528 H4 VB7 40 VB7 H5 H5 H 0 1 N N N 39.473 -8.488 32.410 -5.309 0.284 1.200 H5 VB7 41 VB7 H6 H6 H 0 1 N N N 41.254 -11.819 30.388 -9.202 -0.924 -0.046 H6 VB7 42 VB7 H7 H7 H 0 1 N N N 35.139 -1.977 25.863 2.161 -0.235 -0.450 H7 VB7 43 VB7 H8 H8 H 0 1 N N N 34.389 -3.106 27.041 2.631 0.254 -2.107 H8 VB7 44 VB7 H9 H9 H 0 1 N N N 33.241 -5.551 24.913 4.071 0.501 1.477 H9 VB7 45 VB7 H10 H10 H 0 1 N N N 39.307 -10.793 31.533 -7.706 0.768 0.940 H10 VB7 46 VB7 H11 H11 H 0 1 N N N 43.377 -10.572 30.196 -8.295 -3.093 -0.768 H11 VB7 47 VB7 H12 H12 H 0 1 N N N 44.841 -8.801 31.276 -5.685 -3.961 -1.746 H12 VB7 48 VB7 H13 H13 H 0 1 N N N 44.161 -7.784 29.961 -6.451 -4.746 -0.345 H13 VB7 49 VB7 H14 H14 H 0 1 N N N 41.681 -6.891 33.469 -3.775 -2.155 1.588 H14 VB7 50 VB7 H15 H15 H 0 1 N N N 40.461 -5.537 30.067 -2.830 0.086 2.096 H15 VB7 51 VB7 H16 H16 H 0 1 N N N 39.357 -6.428 34.091 -3.250 -1.047 -1.998 H16 VB7 52 VB7 H17 H17 H 0 1 N N N 36.191 -3.603 27.859 0.737 1.280 0.294 H17 VB7 53 VB7 H18 H18 H 0 1 N N N 36.660 -3.659 25.049 2.618 2.526 -1.575 H18 VB7 54 VB7 H19 H19 H 0 1 N N N 34.970 -5.827 26.500 3.063 2.601 1.291 H19 VB7 55 VB7 H20 H20 H 0 1 N N N 36.001 -6.018 25.042 4.172 3.124 -0.008 H20 VB7 56 VB7 H21 H21 H 0 1 N N N 34.587 -5.814 22.943 5.954 1.967 1.604 H21 VB7 57 VB7 H22 H22 H 0 1 N N N 33.978 -2.853 24.070 4.933 0.604 -1.468 H22 VB7 58 VB7 H23 H23 H 0 1 N N N 32.249 -2.213 25.797 3.961 -1.604 0.418 H23 VB7 59 VB7 H24 H24 H 0 1 N N N 32.173 -3.941 26.281 4.357 -1.841 -1.301 H24 VB7 60 VB7 H25 H25 H 0 1 N N N 29.699 -2.858 26.419 7.077 -4.373 -1.347 H25 VB7 61 VB7 H26 H26 H 0 1 N N N 29.239 -2.096 25.050 5.883 -3.366 -1.966 H26 VB7 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VB7 O32 C28 SING N N 1 VB7 O35 S33 DOUB N N 2 VB7 O31 S33 SING N N 3 VB7 O31 C30 SING N N 4 VB7 S33 O36 DOUB N N 5 VB7 S33 N34 SING N N 6 VB7 C28 C27 SING N N 7 VB7 C28 C29 SING N N 8 VB7 C27 C30 SING N N 9 VB7 C27 C26 SING N N 10 VB7 C29 C1 SING N N 11 VB7 C1 C26 SING N N 12 VB7 C1 N2 SING N N 13 VB7 N4 C5 DOUB Y N 14 VB7 N4 C3 SING Y N 15 VB7 C5 N6 SING Y N 16 VB7 N2 C3 SING N N 17 VB7 C3 C8 DOUB Y N 18 VB7 N6 C7 DOUB Y N 19 VB7 C8 C7 SING Y N 20 VB7 C8 C9 SING N N 21 VB7 O10 C9 DOUB N N 22 VB7 C9 C11 SING N N 23 VB7 C25 C24 DOUB Y N 24 VB7 C25 C18 SING Y N 25 VB7 C24 C23 SING Y N 26 VB7 C11 C12 DOUB Y N 27 VB7 C11 S15 SING Y N 28 VB7 C12 C13 SING Y N 29 VB7 C19 C18 SING N N 30 VB7 C19 C20 SING N N 31 VB7 C18 C17 DOUB Y N 32 VB7 C23 C22 DOUB Y N 33 VB7 C17 C22 SING Y N 34 VB7 C17 C16 SING N N 35 VB7 O21 C20 SING N N 36 VB7 O21 C16 SING N N 37 VB7 C13 C16 SING N N 38 VB7 C13 C14 DOUB Y N 39 VB7 S15 C14 SING Y N 40 VB7 C5 H1 SING N N 41 VB7 C7 H2 SING N N 42 VB7 C20 H3 SING N N 43 VB7 C20 H4 SING N N 44 VB7 C22 H5 SING N N 45 VB7 C24 H6 SING N N 46 VB7 C26 H7 SING N N 47 VB7 C26 H8 SING N N 48 VB7 C28 H9 SING N N 49 VB7 C23 H10 SING N N 50 VB7 C25 H11 SING N N 51 VB7 C19 H12 SING N N 52 VB7 C19 H13 SING N N 53 VB7 C16 H14 SING N N 54 VB7 C12 H15 SING N N 55 VB7 C14 H16 SING N N 56 VB7 N2 H17 SING N N 57 VB7 C1 H18 SING N N 58 VB7 C29 H19 SING N N 59 VB7 C29 H20 SING N N 60 VB7 O32 H21 SING N N 61 VB7 C27 H22 SING N N 62 VB7 C30 H23 SING N N 63 VB7 C30 H24 SING N N 64 VB7 N34 H25 SING N N 65 VB7 N34 H26 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VB7 SMILES ACDLabs 12.01 "c4ncc(C(c3cc(C2c1ccccc1CCO2)cs3)=O)c(n4)NC5CC(C(C5)O)COS(=O)(N)=O" VB7 InChI InChI 1.03 "InChI=1S/C24H26N4O6S2/c25-36(31,32)34-11-15-7-17(9-20(15)29)28-24-19(10-26-13-27-24)22(30)21-8-16(12-35-21)23-18-4-2-1-3-14(18)5-6-33-23/h1-4,8,10,12-13,15,17,20,23,29H,5-7,9,11H2,(H2,25,31,32)(H,26,27,28)/t15-,17-,20+,23+/m1/s1" VB7 InChIKey InChI 1.03 HKKCQZRJLCIYQD-NPDZVAPOSA-N VB7 SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)OC[C@H]1C[C@H](C[C@@H]1O)Nc2ncncc2C(=O)c3scc(c3)[C@@H]4OCCc5ccccc45" VB7 SMILES CACTVS 3.385 "N[S](=O)(=O)OC[CH]1C[CH](C[CH]1O)Nc2ncncc2C(=O)c3scc(c3)[CH]4OCCc5ccccc45" VB7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCO[C@H]2c3cc(sc3)C(=O)c4cncnc4N[C@@H]5C[C@@H]([C@H](C5)O)COS(=O)(=O)N" VB7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCOC2c3cc(sc3)C(=O)c4cncnc4NC5CC(C(C5)O)COS(=O)(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VB7 "SYSTEMATIC NAME" ACDLabs 12.01 "{(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate" VB7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R},2~{S},4~{R})-4-[[5-[4-[(1~{R})-3,4-dihydro-1~{H}-isochromen-1-yl]thiophen-2-yl]carbonylpyrimidin-4-yl]amino]-2-oxidanyl-cyclopentyl]methyl sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VB7 "Create component" 2020-07-22 RCSB VB7 "Initial release" 2021-03-24 RCSB ##