data_VBA # _chem_comp.id VBA _chem_comp.name "[(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl)pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-22 _chem_comp.pdbx_modified_date 2021-03-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.517 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XOI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBA C4 C1 C 0 1 N N N 34.756 -2.918 26.104 -3.207 -0.225 -0.439 C4 VBA 1 VBA C5 C2 C 0 1 N N R 33.791 -3.239 24.932 -4.437 -1.076 -0.034 C5 VBA 2 VBA C8 C3 C 0 1 N N N 32.376 -3.057 25.437 -5.554 -0.179 0.503 C8 VBA 3 VBA C10 C4 C 0 1 Y N N 37.875 -3.409 27.463 0.411 -1.137 -0.560 C10 VBA 4 VBA C15 C5 C 0 1 Y N N 38.465 -3.505 28.725 1.633 -0.436 -0.477 C15 VBA 5 VBA C17 C6 C 0 1 Y N N 38.505 -4.722 30.982 2.949 1.704 -0.010 C17 VBA 6 VBA C21 C7 C 0 1 Y N N 40.029 -5.472 32.445 4.457 3.297 0.208 C21 VBA 7 VBA C22 C8 C 0 1 Y N N 39.880 -5.054 31.142 3.151 3.030 0.440 C22 VBA 8 VBA C24 C9 C 0 1 Y N N 37.565 -6.931 34.393 7.003 0.843 -0.090 C24 VBA 9 VBA C26 C10 C 0 1 Y N N 37.258 -9.346 34.353 8.160 -0.141 1.762 C26 VBA 10 VBA C28 C11 C 0 1 Y N N 35.336 -7.892 34.695 7.493 -1.501 -0.093 C28 VBA 11 VBA C25 C12 C 0 1 Y N N 38.096 -8.226 34.264 7.611 0.968 1.146 C25 VBA 12 VBA C27 C13 C 0 1 Y N N 35.880 -9.178 34.566 8.100 -1.375 1.143 C27 VBA 13 VBA C29 C14 C 0 1 Y N N 36.186 -6.778 34.618 6.944 -0.391 -0.709 C29 VBA 14 VBA C23 C15 C 0 1 N N N 38.434 -5.714 34.327 6.400 2.051 -0.758 C23 VBA 15 VBA N20 N1 N 0 1 Y N N 38.776 -5.378 32.970 4.999 2.187 -0.350 N20 VBA 16 VBA N19 N2 N 0 1 Y N N 37.824 -4.935 32.121 4.107 1.270 -0.468 N19 VBA 17 VBA C16 C16 C 0 1 N N N 37.788 -4.224 29.806 1.682 0.946 0.033 C16 VBA 18 VBA O18 O1 O 0 1 N N N 36.580 -4.367 29.676 0.680 1.461 0.489 O18 VBA 19 VBA C14 C17 C 0 1 Y N N 39.673 -2.870 28.936 2.796 -1.092 -0.893 C14 VBA 20 VBA N13 N3 N 0 1 Y N N 40.305 -2.174 27.966 2.706 -2.332 -1.344 N13 VBA 21 VBA C12 C18 C 0 1 Y N N 39.676 -2.134 26.786 1.544 -2.954 -1.406 C12 VBA 22 VBA N11 N4 N 0 1 Y N N 38.505 -2.724 26.508 0.420 -2.382 -1.027 N11 VBA 23 VBA N9 N5 N 0 1 N N N 36.637 -4.020 27.220 -0.767 -0.545 -0.159 N9 VBA 24 VBA C3 C19 C 0 1 N N R 35.983 -3.850 25.895 -2.041 -1.241 -0.358 C3 VBA 25 VBA C2 C20 C 0 1 N N S 35.185 -5.135 25.620 -2.380 -2.108 0.872 C2 VBA 26 VBA O7 O2 O 0 1 N N N 36.108 -6.079 25.074 -2.008 -3.467 0.631 O7 VBA 27 VBA C1 C21 C 0 1 N N R 34.085 -4.731 24.607 -3.906 -2.003 1.078 C1 VBA 28 VBA O6 O3 O 0 1 N N N 34.582 -4.824 23.255 -4.507 -3.294 0.968 O6 VBA 29 VBA O30 O4 O 0 1 N N N 31.501 -3.327 24.379 -6.049 0.649 -0.550 O30 VBA 30 VBA S31 S1 S 0 1 N N N 30.031 -3.992 24.679 -7.170 1.587 -0.126 S31 VBA 31 VBA O33 O5 O 0 1 N N N 29.395 -3.899 23.376 -7.671 2.178 -1.317 O33 VBA 32 VBA O34 O6 O 0 1 N N N 30.351 -5.270 25.275 -7.984 0.855 0.780 O34 VBA 33 VBA N32 N6 N 0 1 N N N 29.417 -2.778 25.669 -6.481 2.811 0.749 N32 VBA 34 VBA H1 H1 H 0 1 N N N 35.064 -1.863 26.071 -3.318 0.156 -1.454 H1 VBA 35 VBA H2 H2 H 0 1 N N N 34.273 -3.129 27.069 -3.056 0.594 0.265 H2 VBA 36 VBA H3 H3 H 0 1 N N N 33.997 -2.597 24.063 -4.792 -1.660 -0.883 H3 VBA 37 VBA H4 H4 H 0 1 N N N 32.234 -2.023 25.784 -6.364 -0.800 0.889 H4 VBA 38 VBA H5 H5 H 0 1 N N N 32.184 -3.753 26.267 -5.164 0.447 1.305 H5 VBA 39 VBA H6 H6 H 0 1 N N N 40.932 -5.799 32.938 4.971 4.221 0.426 H6 VBA 40 VBA H7 H7 H 0 1 N N N 40.653 -4.991 30.390 2.416 3.691 0.877 H7 VBA 41 VBA H8 H8 H 0 1 N N N 37.672 -10.339 34.258 8.634 -0.043 2.727 H8 VBA 42 VBA H9 H9 H 0 1 N N N 34.276 -7.760 34.852 7.446 -2.465 -0.576 H9 VBA 43 VBA H10 H10 H 0 1 N N N 39.155 -8.359 34.096 7.657 1.933 1.630 H10 VBA 44 VBA H11 H11 H 0 1 N N N 35.237 -10.043 34.631 8.528 -2.242 1.625 H11 VBA 45 VBA H12 H12 H 0 1 N N N 35.774 -5.787 34.734 6.470 -0.489 -1.674 H12 VBA 46 VBA H13 H13 H 0 1 N N N 39.359 -5.905 34.891 6.952 2.944 -0.464 H13 VBA 47 VBA H14 H14 H 0 1 N N N 37.897 -4.867 34.780 6.453 1.932 -1.840 H14 VBA 48 VBA H15 H15 H 0 1 N N N 40.129 -2.932 29.913 3.753 -0.594 -0.848 H15 VBA 49 VBA H16 H16 H 0 1 N N N 40.152 -1.580 25.990 1.513 -3.966 -1.781 H16 VBA 50 VBA H17 H17 H 0 1 N N N 36.000 -3.669 27.906 -0.753 0.332 0.254 H17 VBA 51 VBA H18 H18 H 0 1 N N N 36.649 -3.542 25.076 -2.004 -1.852 -1.259 H18 VBA 52 VBA H19 H19 H 0 1 N N N 34.725 -5.503 26.549 -1.859 -1.729 1.752 H19 VBA 53 VBA H20 H20 H 0 1 N N N 36.762 -6.297 25.727 -2.196 -4.063 1.369 H20 VBA 54 VBA H21 H21 H 0 1 N N N 33.182 -5.341 24.757 -4.120 -1.573 2.057 H21 VBA 55 VBA H22 H22 H 0 1 N N N 34.765 -5.733 23.046 -4.214 -3.924 1.641 H22 VBA 56 VBA H23 H23 H 0 1 N N N 29.848 -2.832 26.570 -5.522 2.821 0.899 H23 VBA 57 VBA H24 H24 H 0 1 N N N 29.609 -1.886 25.261 -7.035 3.519 1.113 H24 VBA 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBA O6 C1 SING N N 1 VBA O33 S31 DOUB N N 2 VBA O30 S31 SING N N 3 VBA O30 C8 SING N N 4 VBA C1 C5 SING N N 5 VBA C1 C2 SING N N 6 VBA S31 O34 DOUB N N 7 VBA S31 N32 SING N N 8 VBA C5 C8 SING N N 9 VBA C5 C4 SING N N 10 VBA O7 C2 SING N N 11 VBA C2 C3 SING N N 12 VBA C3 C4 SING N N 13 VBA C3 N9 SING N N 14 VBA N11 C12 DOUB Y N 15 VBA N11 C10 SING Y N 16 VBA C12 N13 SING Y N 17 VBA N9 C10 SING N N 18 VBA C10 C15 DOUB Y N 19 VBA N13 C14 DOUB Y N 20 VBA C15 C14 SING Y N 21 VBA C15 C16 SING N N 22 VBA O18 C16 DOUB N N 23 VBA C16 C17 SING N N 24 VBA C17 C22 SING Y N 25 VBA C17 N19 DOUB Y N 26 VBA C22 C21 DOUB Y N 27 VBA N19 N20 SING Y N 28 VBA C21 N20 SING Y N 29 VBA N20 C23 SING N N 30 VBA C25 C26 DOUB Y N 31 VBA C25 C24 SING Y N 32 VBA C23 C24 SING N N 33 VBA C26 C27 SING Y N 34 VBA C24 C29 DOUB Y N 35 VBA C27 C28 DOUB Y N 36 VBA C29 C28 SING Y N 37 VBA C4 H1 SING N N 38 VBA C4 H2 SING N N 39 VBA C5 H3 SING N N 40 VBA C8 H4 SING N N 41 VBA C8 H5 SING N N 42 VBA C21 H6 SING N N 43 VBA C22 H7 SING N N 44 VBA C26 H8 SING N N 45 VBA C28 H9 SING N N 46 VBA C25 H10 SING N N 47 VBA C27 H11 SING N N 48 VBA C29 H12 SING N N 49 VBA C23 H13 SING N N 50 VBA C23 H14 SING N N 51 VBA C14 H15 SING N N 52 VBA C12 H16 SING N N 53 VBA N9 H17 SING N N 54 VBA C3 H18 SING N N 55 VBA C2 H19 SING N N 56 VBA O7 H20 SING N N 57 VBA C1 H21 SING N N 58 VBA O6 H22 SING N N 59 VBA N32 H23 SING N N 60 VBA N32 H24 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBA SMILES ACDLabs 12.01 "C1C(COS(=O)(N)=O)C(C(C1Nc2c(cncn2)C(c4ccn(Cc3ccccc3)n4)=O)O)O" VBA InChI InChI 1.03 "InChI=1S/C21H24N6O6S/c22-34(31,32)33-11-14-8-17(20(30)18(14)28)25-21-15(9-23-12-24-21)19(29)16-6-7-27(26-16)10-13-4-2-1-3-5-13/h1-7,9,12,14,17-18,20,28,30H,8,10-11H2,(H2,22,31,32)(H,23,24,25)/t14-,17-,18-,20+/m1/s1" VBA InChIKey InChI 1.03 AGIKMOLYLSSZIM-ZESCBINXSA-N VBA SMILES_CANONICAL CACTVS 3.385 "N[S](=O)(=O)OC[C@H]1C[C@@H](Nc2ncncc2C(=O)c3ccn(Cc4ccccc4)n3)[C@H](O)[C@@H]1O" VBA SMILES CACTVS 3.385 "N[S](=O)(=O)OC[CH]1C[CH](Nc2ncncc2C(=O)c3ccn(Cc4ccccc4)n3)[CH](O)[CH]1O" VBA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cn2ccc(n2)C(=O)c3cncnc3N[C@@H]4C[C@@H]([C@H]([C@H]4O)O)COS(=O)(=O)N" VBA SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cn2ccc(n2)C(=O)c3cncnc3NC4CC(C(C4O)O)COS(=O)(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VBA "SYSTEMATIC NAME" ACDLabs 12.01 "[(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl)pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamate" VBA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[5-[1-(phenylmethyl)pyrazol-3-yl]carbonylpyrimidin-4-yl]amino]cyclopentyl]methyl sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBA "Create component" 2020-07-22 RCSB VBA "Initial release" 2021-03-24 RCSB ##