data_VCW # _chem_comp.id VCW _chem_comp.name "[(2S,3S,4S,5R,6S)-6-[(2R)-2,3-bis(oxidanyl)propoxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "sulfoquinovosyl glycerol; SQGro" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-05 _chem_comp.pdbx_modified_date 2022-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VCW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OFX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VCW C4 C1 C 0 1 N N N 19.733 54.606 2.641 -2.046 -0.067 -0.666 C4 VCW 1 VCW C5 C2 C 0 1 N N R 18.824 55.782 2.387 -3.152 0.061 0.383 C5 VCW 2 VCW C6 C3 C 0 1 N N N 17.623 55.392 1.547 -4.008 1.291 0.074 C6 VCW 3 VCW C7 C4 C 0 1 N N R 22.694 54.596 4.879 0.607 -2.667 -0.903 C7 VCW 4 VCW C8 C5 C 0 1 N N S 23.786 54.368 3.799 1.212 -2.573 0.501 C8 VCW 5 VCW C1 C6 C 0 1 N N N 22.351 50.997 2.562 2.340 1.092 0.169 C1 VCW 6 VCW C2 C7 C 0 1 N N S 22.424 52.485 2.894 1.387 -0.105 0.172 C2 VCW 7 VCW C3 C8 C 0 1 N N S 21.338 54.124 4.357 -0.104 -1.352 -1.234 C3 VCW 8 VCW C9 C9 C 0 1 N N S 23.789 52.895 3.411 2.158 -1.370 0.558 C9 VCW 9 VCW O1 O1 O 0 1 N N N 21.249 51.004 0.222 0.555 2.910 0.959 O1 VCW 10 VCW S1 S1 S 0 1 N N N 21.010 50.483 1.531 1.401 2.612 -0.143 S1 VCW 11 VCW O2 O2 O 0 1 N N N 19.762 50.877 2.126 2.447 3.717 -0.123 O2 VCW 12 VCW O3 O3 O 0 1 N N N 21.124 49.007 1.606 0.902 2.626 -1.474 O3 VCW 13 VCW O4 O4 O 0 1 N N N 21.390 52.793 3.854 0.825 -0.271 -1.133 O4 VCW 14 VCW O5 O5 O 0 1 N N N 20.941 54.988 3.326 -1.178 -1.145 -0.314 O5 VCW 15 VCW O6 O6 O 0 1 N N N 18.401 56.260 3.659 -3.972 -1.109 0.356 O6 VCW 16 VCW O7 O7 O 0 1 N N N 16.608 56.387 1.614 -4.967 1.478 1.117 O7 VCW 17 VCW O8 O8 O 0 1 N N N 22.569 55.952 5.300 -0.333 -3.742 -0.947 O8 VCW 18 VCW O9 O9 O 0 1 N N N 25.117 54.705 4.231 1.940 -3.769 0.789 O9 VCW 19 VCW O10 O10 O 0 1 N N N 24.740 52.682 2.391 2.672 -1.230 1.884 O10 VCW 20 VCW H1 H1 H 0 1 N N N 19.195 53.869 3.256 -2.492 -0.263 -1.642 H1 VCW 21 VCW H2 H2 H 0 1 N N N 20.002 54.152 1.676 -1.475 0.861 -0.708 H2 VCW 22 VCW H3 H3 H 0 1 N N N 19.389 56.563 1.858 -2.705 0.169 1.371 H3 VCW 23 VCW H4 H4 H 0 1 N N N 17.218 54.439 1.919 -3.369 2.171 0.007 H4 VCW 24 VCW H5 H5 H 0 1 N N N 17.940 55.272 0.501 -4.526 1.145 -0.874 H5 VCW 25 VCW H6 H6 H 0 1 N N N 22.954 53.973 5.747 1.399 -2.845 -1.630 H6 VCW 26 VCW H7 H7 H 0 1 N N N 23.522 54.963 2.912 0.414 -2.447 1.234 H7 VCW 27 VCW H8 H8 H 0 1 N N N 22.273 50.446 3.511 2.837 1.164 1.136 H8 VCW 28 VCW H9 H9 H 0 1 N N N 23.287 50.722 2.054 3.087 0.959 -0.614 H9 VCW 29 VCW H10 H10 H 0 1 N N N 22.229 53.047 1.968 0.589 0.068 0.894 H10 VCW 30 VCW H11 H11 H 0 1 N N N 20.616 54.175 5.185 -0.499 -1.397 -2.249 H11 VCW 31 VCW H12 H12 H 0 1 N N N 24.033 52.292 4.298 2.983 -1.521 -0.139 H12 VCW 32 VCW H13 H13 H 0 1 N N N 19.161 56.501 4.176 -4.403 -1.267 -0.495 H13 VCW 33 VCW H14 H14 H 0 1 N N N 15.868 56.121 1.081 -5.546 2.242 0.987 H14 VCW 34 VCW H15 H15 H 0 1 N N N 21.887 56.018 5.958 -0.758 -3.858 -1.809 H15 VCW 35 VCW H16 H16 H 0 1 N N N 25.147 55.621 4.481 1.402 -4.572 0.763 H16 VCW 36 VCW H17 H17 H 0 1 N N N 25.601 52.935 2.702 3.173 -1.997 2.195 H17 VCW 37 VCW H18 H18 H 0 1 N N N 19.298 50.106 2.430 2.089 4.601 -0.278 H18 VCW 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VCW O1 S1 DOUB N N 1 VCW S1 O3 DOUB N N 2 VCW S1 O2 SING N N 3 VCW S1 C1 SING N N 4 VCW C6 O7 SING N N 5 VCW C6 C5 SING N N 6 VCW C5 C4 SING N N 7 VCW C5 O6 SING N N 8 VCW O10 C9 SING N N 9 VCW C1 C2 SING N N 10 VCW C4 O5 SING N N 11 VCW C2 C9 SING N N 12 VCW C2 O4 SING N N 13 VCW O5 C3 SING N N 14 VCW C9 C8 SING N N 15 VCW C8 O9 SING N N 16 VCW C8 C7 SING N N 17 VCW O4 C3 SING N N 18 VCW C3 C7 SING N N 19 VCW C7 O8 SING N N 20 VCW C4 H1 SING N N 21 VCW C4 H2 SING N N 22 VCW C5 H3 SING N N 23 VCW C6 H4 SING N N 24 VCW C6 H5 SING N N 25 VCW C7 H6 SING N N 26 VCW C8 H7 SING N N 27 VCW C1 H8 SING N N 28 VCW C1 H9 SING N N 29 VCW C2 H10 SING N N 30 VCW C3 H11 SING N N 31 VCW C9 H12 SING N N 32 VCW O6 H13 SING N N 33 VCW O7 H14 SING N N 34 VCW O8 H15 SING N N 35 VCW O9 H16 SING N N 36 VCW O10 H17 SING N N 37 VCW O2 H18 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VCW InChI InChI 1.03 "InChI=1S/C9H18O10S/c10-1-4(11)2-18-9-8(14)7(13)6(12)5(19-9)3-20(15,16)17/h4-14H,1-3H2,(H,15,16,17)/t4-,5-,6-,7+,8-,9+/m1/s1" VCW InChIKey InChI 1.03 JTXHNMDHGMNPEG-NZJLWHDDSA-N VCW SMILES_CANONICAL CACTVS 3.385 "OC[C@@H](O)CO[C@H]1O[C@H](C[S](O)(=O)=O)[C@@H](O)[C@H](O)[C@H]1O" VCW SMILES CACTVS 3.385 "OC[CH](O)CO[CH]1O[CH](C[S](O)(=O)=O)[CH](O)[CH](O)[CH]1O" VCW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OC[C@@H](CO)O)O)O)O)S(=O)(=O)O" VCW SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OCC(CO)O)O)O)O)S(=O)(=O)O" # _pdbx_chem_comp_identifier.comp_id VCW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{S},4~{S},5~{R},6~{S})-6-[(2~{R})-2,3-bis(oxidanyl)propoxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methanesulfonic acid" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VCW "sulfoquinovosyl glycerol" AUTHOR ? 2 VCW SQGro AUTHOR ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VCW "Create component" 2021-05-05 PDBE VCW "Initial release" 2022-01-19 RCSB ##