data_VDV # _chem_comp.id VDV _chem_comp.name alpha-D-allofuranose _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-30 _chem_comp.pdbx_modified_date 2021-05-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6X7T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDV C4 C1 C 0 1 N N S 22.906 0.463 69.110 0.723 -0.972 0.219 C4 VDV 1 VDV C5 C2 C 0 1 N N R 23.752 -0.188 70.099 1.781 -0.089 0.924 C5 VDV 2 VDV C6 C3 C 0 1 N N S 23.027 -0.908 71.122 1.540 1.294 0.267 C6 VDV 3 VDV C1 C4 C 0 1 N N N 20.250 -0.335 67.479 -2.715 0.724 -0.267 C1 VDV 4 VDV C2 C5 C 0 1 N N R 20.702 -0.939 68.810 -1.693 -0.280 0.269 C2 VDV 5 VDV C3 C6 C 0 1 N N R 21.621 -0.112 69.584 -0.314 0.035 -0.315 C3 VDV 6 VDV O1 O1 O 0 1 N N N 21.680 -0.378 71.037 0.106 1.344 0.103 O1 VDV 7 VDV O2 O2 O 0 1 N N N 23.508 -0.981 72.347 2.194 1.369 -1.001 O2 VDV 8 VDV O3 O3 O 0 1 N N N 25.095 0.198 70.301 3.102 -0.559 0.652 O3 VDV 9 VDV O4 O4 O 0 1 N N N 22.977 1.835 69.485 1.317 -1.698 -0.860 O4 VDV 10 VDV O5 O5 O 0 1 N N N 21.557 -2.026 68.598 -2.080 -1.602 -0.111 O5 VDV 11 VDV O6 O6 O 0 1 N N N 19.399 0.738 67.712 -3.977 0.503 0.366 O6 VDV 12 VDV H5 H1 H 0 1 N N N 23.151 0.239 68.061 0.260 -1.657 0.929 H5 VDV 13 VDV H6 H2 H 0 1 N N N 23.980 -1.071 69.484 1.598 -0.046 1.998 H6 VDV 14 VDV H7 H3 H 0 1 N N N 22.953 -1.940 70.750 1.882 2.095 0.922 H7 VDV 15 VDV H2 H4 H 0 1 N N N 19.720 -1.100 66.892 -2.375 1.738 -0.055 H2 VDV 16 VDV H1 H5 H 0 1 N N N 21.130 0.013 66.918 -2.822 0.595 -1.344 H1 VDV 17 VDV H3 H6 H 0 1 N N N 19.825 -1.219 69.411 -1.652 -0.212 1.356 H3 VDV 18 VDV H4 H7 H 0 1 N N N 21.028 0.814 69.611 -0.353 -0.014 -1.403 H4 VDV 19 VDV H8 H8 H 0 1 N N N 22.915 -1.485 72.891 2.075 2.214 -1.456 H8 VDV 20 VDV H9 H9 H 0 1 N N N 25.480 -0.339 70.983 3.800 -0.038 1.073 H9 VDV 21 VDV H10 H10 H 0 1 N N N 23.798 2.204 69.183 1.978 -2.346 -0.581 H10 VDV 22 VDV H11 H11 H 0 1 N N N 21.826 -2.386 69.435 -2.138 -1.736 -1.067 H11 VDV 23 VDV H12 H12 H 0 1 N N N 19.122 1.109 66.882 -4.675 1.106 0.074 H12 VDV 24 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDV C1 O6 SING N N 1 VDV C1 C2 SING N N 2 VDV O5 C2 SING N N 3 VDV C2 C3 SING N N 4 VDV C4 O4 SING N N 5 VDV C4 C3 SING N N 6 VDV C4 C5 SING N N 7 VDV C3 O1 SING N N 8 VDV C5 O3 SING N N 9 VDV C5 C6 SING N N 10 VDV O1 C6 SING N N 11 VDV C6 O2 SING N N 12 VDV C4 H5 SING N N 13 VDV C5 H6 SING N N 14 VDV C6 H7 SING N N 15 VDV C1 H2 SING N N 16 VDV C1 H1 SING N N 17 VDV C2 H3 SING N N 18 VDV C3 H4 SING N N 19 VDV O2 H8 SING N N 20 VDV O3 H9 SING N N 21 VDV O4 H10 SING N N 22 VDV O5 H11 SING N N 23 VDV O6 H12 SING N N 24 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDV SMILES ACDLabs 12.01 "C1(O)C(C(CO)O)OC(C1O)O" VDV InChI InChI 1.03 "InChI=1S/C6H12O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2-11H,1H2/t2-,3+,4-,5-,6+/m1/s1" VDV InChIKey InChI 1.03 AVVWPBAENSWJCB-RXRWUWDJSA-N VDV SMILES_CANONICAL CACTVS 3.385 "OC[C@@H](O)[C@H]1O[C@H](O)[C@H](O)[C@@H]1O" VDV SMILES CACTVS 3.385 "OC[CH](O)[CH]1O[CH](O)[CH](O)[CH]1O" VDV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]([C@@H]1[C@H]([C@H]([C@H](O1)O)O)O)O)O" VDV SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C1C(C(C(O1)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VDV "SYSTEMATIC NAME" ACDLabs 12.01 alpha-D-allofuranose VDV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{R},4~{S},5~{R})-5-[(1~{R})-1,2-bis(oxidanyl)ethyl]oxolane-2,3,4-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDV "Create component" 2020-07-30 RCSB VDV "Initial release" 2021-06-02 RCSB ##