data_VER # _chem_comp.id VER _chem_comp.name IRON-OCTAETHYLPORPHYRIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H27 Fe N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms VERDOHEME _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2004-07-28 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 547.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VER _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1TWN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VER FE FE FE 0 0 N N N 25.570 22.450 -34.466 ? ? ? FE VER 1 VER NA NA N 0 1 N N N 26.251 20.777 -35.314 ? ? ? NA VER 2 VER NB NB N 0 1 Y N N 27.292 22.607 -33.466 ? ? ? NB VER 3 VER NC NC N 0 1 N N N 24.775 23.804 -33.213 ? ? ? NC VER 4 VER ND ND N 0 1 N N S 23.728 21.942 -35.054 ? ? ? ND VER 5 VER C1A C1A C 0 1 N N N 25.571 19.907 -36.169 ? ? ? C1A VER 6 VER CHA CHA C 0 1 N N N 24.215 19.936 -36.421 ? ? ? CHA VER 7 VER C4D C4D C 0 1 N N N 23.345 20.886 -35.888 ? ? ? C4D VER 8 VER C1B C1B C 0 1 Y N N 28.425 21.793 -33.568 ? ? ? C1B VER 9 VER CHB CHB C 0 1 N N N 28.535 20.668 -34.381 ? ? ? CHB VER 10 VER C4A C4A C 0 1 N N N 27.515 20.194 -35.199 ? ? ? C4A VER 11 VER C1C C1C C 0 1 N N N 25.438 24.623 -32.295 ? ? ? C1C VER 12 VER O O O 1 1 N N N 26.774 24.509 -31.956 ? ? ? O VER 13 VER C4B C4B C 0 1 Y N N 27.643 23.554 -32.491 ? ? ? C4B VER 14 VER C1D C1D C 0 1 N N N 22.521 22.571 -34.731 ? ? ? C1D VER 15 VER CHD CHD C 0 1 N N N 22.382 23.603 -33.798 ? ? ? CHD VER 16 VER C4C C4C C 0 1 N N N 23.431 24.173 -33.077 ? ? ? C4C VER 17 VER C3A C3A C 0 1 N N N 27.606 19.004 -36.039 ? ? ? C3A VER 18 VER CMA CMA C 0 1 N N N 28.789 18.071 -36.273 ? ? ? CMA VER 19 VER C2B C2B C 0 1 Y N N 29.483 22.257 -32.684 ? ? ? C2B VER 20 VER CMB CMB C 0 1 N N N 30.899 21.689 -32.552 ? ? ? CMB VER 21 VER C3B C3B C 0 1 Y N N 29.011 23.337 -32.014 ? ? ? C3B VER 22 VER CAB CAB C 0 1 N N N 29.721 24.053 -31.054 ? ? ? CAB VER 23 VER CBB CBB C 0 1 N N N 30.153 25.419 -31.274 ? ? ? CBB VER 24 VER C2C C2C C 0 1 N N N 24.519 25.532 -31.632 ? ? ? C2C VER 25 VER CMC CMC C 0 1 N N N 24.876 26.661 -30.671 ? ? ? CMC VER 26 VER C3C C3C C 0 1 N N N 23.270 25.234 -32.077 ? ? ? C3C VER 27 VER CAC CAC C 0 1 N N N 22.074 25.812 -31.641 ? ? ? CAC VER 28 VER CBC CBC C 0 1 N N N 21.644 25.843 -30.248 ? ? ? CBC VER 29 VER C2D C2D C 0 1 N N N 21.400 21.929 -35.402 ? ? ? C2D VER 30 VER CMD CMD C 0 1 N N N 19.933 22.335 -35.346 ? ? ? CMD VER 31 VER C3D C3D C 0 1 N N N 21.900 20.886 -36.107 ? ? ? C3D VER 32 VER CAD CAD C 0 1 N N N 21.059 19.929 -36.961 ? ? ? CAD VER 33 VER CBD CBD C 0 1 N N N 21.433 19.931 -38.434 ? ? ? CBD VER 34 VER CGD CGD C 0 1 N N N 20.514 19.068 -39.272 ? ? ? CGD VER 35 VER O1D O1D O 0 1 N N N 19.346 19.466 -39.478 ? ? ? O1D VER 36 VER O2D O2D O 0 1 N N N 20.959 17.989 -39.720 ? ? ? O2D VER 37 VER C1 C1 C 0 1 N N N ? ? ? ? ? ? C1 VER 38 VER HHA HHA H 0 1 N N N 23.803 19.177 -37.070 ? ? ? HHA VER 39 VER HHB HHB H 0 1 N N N 29.471 20.130 -34.376 ? ? ? HHB VER 40 VER HHD HHD H 0 1 N N N 21.388 23.987 -33.623 ? ? ? HHD VER 41 VER HMA HMA H 0 1 N N N 29.681 17.470 -36.371 ? ? ? HMA VER 42 VER HMB1 HMB1 H 0 0 N N N 31.563 22.186 -33.274 ? ? ? HMB1 VER 43 VER HMB2 HMB2 H 0 0 N N N 31.271 21.864 -31.532 ? ? ? HMB2 VER 44 VER HMB3 HMB3 H 0 0 N N N 30.881 20.608 -32.755 ? ? ? HMB3 VER 45 VER HAB HAB H 0 1 N N N 29.958 23.575 -30.115 ? ? ? HAB VER 46 VER HBB1 HBB1 H 0 0 N N N 30.702 25.942 -30.505 ? ? ? HBB1 VER 47 VER HBB2 HBB2 H 0 0 N N N 29.926 25.914 -32.207 ? ? ? HBB2 VER 48 VER HMC1 HMC1 H 0 0 N N N 23.957 27.166 -30.340 ? ? ? HMC1 VER 49 VER HMC2 HMC2 H 0 0 N N N 25.401 26.247 -29.798 ? ? ? HMC2 VER 50 VER HMC3 HMC3 H 0 0 N N N 25.528 27.385 -31.182 ? ? ? HMC3 VER 51 VER HAC HAC H 0 1 N N N 21.429 26.263 -32.381 ? ? ? HAC VER 52 VER HBC1 HBC1 H 0 0 N N N 20.706 26.307 -29.983 ? ? ? HBC1 VER 53 VER HBC2 HBC2 H 0 0 N N N 22.264 25.402 -29.482 ? ? ? HBC2 VER 54 VER HMD1 HMD1 H 0 0 N N N 19.338 21.646 -35.963 ? ? ? HMD1 VER 55 VER HMD2 HMD2 H 0 0 N N N 19.580 22.292 -34.305 ? ? ? HMD2 VER 56 VER HMD3 HMD3 H 0 0 N N N 19.821 23.360 -35.729 ? ? ? HMD3 VER 57 VER HAD1 HAD1 H 0 0 N N N 21.191 18.909 -36.571 ? ? ? HAD1 VER 58 VER HAD2 HAD2 H 0 0 N N N 20.002 20.222 -36.871 ? ? ? HAD2 VER 59 VER HBD1 HBD1 H 0 0 N N N 21.383 20.964 -38.808 ? ? ? HBD1 VER 60 VER HBD2 HBD2 H 0 0 N N N 22.461 19.553 -38.536 ? ? ? HBD2 VER 61 VER H1D H1D H 0 1 N N N 18.883 18.830 -40.010 ? ? ? H1D VER 62 VER H11 H11 H 0 1 N N N 0.069 -0.909 -0.641 ? ? ? H11 VER 63 VER H12 H12 H 0 1 N N N 0.289 0.020 1.076 ? ? ? H12 VER 64 VER H13 H13 H 0 1 N N N -0.964 0.444 0.339 ? ? ? H13 VER 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VER FE NA SING N N 1 VER FE NB SING N N 2 VER FE NC SING N N 3 VER FE ND SING N N 4 VER NA C1A DOUB N N 5 VER NA C4A SING N N 6 VER NB C1B SING Y N 7 VER NB C4B SING Y N 8 VER NC C1C SING N N 9 VER NC C4C DOUB N N 10 VER ND C4D SING N N 11 VER ND C1D SING N N 12 VER C1A CHA SING N N 13 VER C1A CMA SING N N 14 VER CHA C4D DOUB N N 15 VER CHA HHA SING N N 16 VER C4D C3D SING N N 17 VER C1B CHB SING N N 18 VER C1B C2B DOUB Y N 19 VER CHB C4A DOUB N N 20 VER CHB HHB SING N N 21 VER C4A C3A SING N N 22 VER C1C O DOUB N N 23 VER C1C C2C SING N N 24 VER O C4B SING N N 25 VER C4B C3B DOUB Y N 26 VER C1D CHD DOUB N N 27 VER C1D C2D SING N N 28 VER CHD C4C SING N N 29 VER CHD HHD SING N N 30 VER C4C C3C SING N N 31 VER C3A CMA DOUB N N 32 VER C3A C1 SING N N 33 VER CMA HMA SING N N 34 VER C2B CMB SING N N 35 VER C2B C3B SING Y N 36 VER CMB HMB1 SING N N 37 VER CMB HMB2 SING N N 38 VER CMB HMB3 SING N N 39 VER C3B CAB SING N N 40 VER CAB CBB DOUB N N 41 VER CAB HAB SING N N 42 VER CBB HBB1 SING N N 43 VER CBB HBB2 SING N N 44 VER C2C CMC SING N N 45 VER C2C C3C DOUB N N 46 VER CMC HMC1 SING N N 47 VER CMC HMC2 SING N N 48 VER CMC HMC3 SING N N 49 VER C3C CAC SING N N 50 VER CAC CBC DOUB N N 51 VER CAC HAC SING N N 52 VER CBC HBC1 SING N N 53 VER CBC HBC2 SING N N 54 VER C2D CMD SING N N 55 VER C2D C3D DOUB N N 56 VER CMD HMD1 SING N N 57 VER CMD HMD2 SING N N 58 VER CMD HMD3 SING N N 59 VER C3D CAD SING N N 60 VER CAD CBD SING N N 61 VER CAD HAD1 SING N N 62 VER CAD HAD2 SING N N 63 VER CBD CGD SING N N 64 VER CBD HBD1 SING N N 65 VER CBD HBD2 SING N N 66 VER CGD O1D SING N N 67 VER CGD O2D DOUB N N 68 VER O1D H1D SING N N 69 VER C1 H11 SING N N 70 VER C1 H12 SING N N 71 VER C1 H13 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VER InChI InChI 1.06 "InChI=1S/C30H28N4O3.Fe/c1-7-20-18(6)29-34-27(20)14-24-17(5)22(9-10-28(35)36)26(32-24)12-19-11-15(3)23(31-19)13-25-16(4)21(8-2)30(33-25)37-29;/h7-8,11-14H,1-2,9-10H2,3-6H3,(H2-,31,32,33,34,35,36);/q;+2/p-1/b19-12-,23-13-,24-14-,25-13-,26-12-,27-14-;" VER InChIKey InChI 1.06 TXPACERVXXBEPS-DWJCAOJKSA-M VER SMILES_CANONICAL CACTVS 3.385 "CC1=CC2=NC1=Cc3n4[Fe][N@]5C(=CC6=NC(=[O+]c4c(C=C)c3C)C(=C6C=C)C)C(=C(CCC(O)=O)C5=C2)C" VER SMILES CACTVS 3.385 "CC1=CC2=NC1=Cc3n4[Fe][N]5C(=CC6=NC(=[O+]c4c(C=C)c3C)C(=C6C=C)C)C(=C(CCC(O)=O)C5=C2)C" VER SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1C=C)[O+]=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C(C7=C2)C)C=C8N6C(=C5)C(=C8CCC(=O)O)C)C=C)C" VER SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1C=C)[O+]=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C(C7=C2)C)C=C8N6C(=C5)C(=C8CCC(=O)O)C)C=C)C" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VER _pdbx_chem_comp_synonyms.name VERDOHEME _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VER "Modify synonyms" 2020-06-11 PDBE VER "Modify descriptor" 2023-09-23 RCSB #