data_VJV # _chem_comp.id VJV _chem_comp.name "(1S)-N-{(1S)-7,7-dihydroxy-1-[4-(2-methylquinolin-6-yl)-1H-imidazol-2-yl]nonyl}-6-methyl-6-azaspiro[2.5]octane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H43 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-17 _chem_comp.pdbx_modified_date 2021-08-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.705 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VJV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JS8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VJV O2 O1 O 0 1 N N N 76.305 32.400 -2.465 2.905 -1.207 1.327 O2 VJV 1 VJV C22 C1 C 0 1 N N N 76.362 31.780 -1.406 2.545 -1.866 0.375 C22 VJV 2 VJV C23 C2 C 0 1 N N S 77.660 31.187 -0.890 3.411 -2.988 -0.135 C23 VJV 3 VJV C25 C3 C 0 1 N N N 78.766 32.139 -0.480 3.184 -4.379 0.454 C25 VJV 4 VJV C30 C4 C 0 1 N N N 79.561 31.812 0.786 3.355 -5.585 -0.474 C30 VJV 5 VJV C29 C5 C 0 1 N N N 78.939 32.441 2.020 1.985 -5.957 -1.051 C29 VJV 6 VJV N4 N1 N 0 1 N N N 78.800 33.925 1.873 1.040 -6.193 0.047 N4 VJV 7 VJV C28 C6 C 0 1 N N N 78.219 34.537 3.101 -0.219 -6.761 -0.455 C28 VJV 8 VJV C27 C7 C 0 1 N N N 77.991 34.265 0.656 0.794 -4.969 0.820 C27 VJV 9 VJV C26 C8 C 0 1 N N N 78.590 33.656 -0.605 2.089 -4.536 1.515 C26 VJV 10 VJV C24 C9 C 0 1 N N N 78.953 31.302 -1.698 4.435 -3.587 0.832 C24 VJV 11 VJV N3 N2 N 0 1 N N N 75.292 31.578 -0.630 1.367 -1.599 -0.223 N3 VJV 12 VJV C8 C10 C 0 1 N N S 73.984 32.116 -0.967 0.521 -0.511 0.277 C8 VJV 13 VJV C7 C11 C 0 1 N N N 72.884 31.244 -0.359 0.971 0.812 -0.345 C7 VJV 14 VJV C6 C12 C 0 1 N N N 71.458 31.620 -0.760 2.385 1.146 0.133 C6 VJV 15 VJV C5 C13 C 0 1 N N N 70.412 30.705 -0.140 2.835 2.469 -0.490 C5 VJV 16 VJV C4 C14 C 0 1 N N N 68.979 30.899 -0.636 4.249 2.804 -0.012 C4 VJV 17 VJV C3 C15 C 0 1 N N N 68.021 29.952 0.094 4.699 4.127 -0.635 C3 VJV 18 VJV C2 C16 C 0 1 N N N 66.660 29.751 -0.574 6.113 4.461 -0.157 C2 VJV 19 VJV O1 O2 O 0 1 N N N 66.010 30.985 -0.771 6.119 4.579 1.267 O1 VJV 20 VJV O O3 O 0 1 N N N 66.828 29.098 -1.814 7.008 3.420 -0.553 O VJV 21 VJV C1 C17 C 0 1 N N N 65.704 28.864 0.222 6.562 5.785 -0.780 C1 VJV 22 VJV C C18 C 0 1 N N N 65.474 29.313 1.654 7.977 6.119 -0.302 C VJV 23 VJV C9 C19 C 0 1 Y N N 73.871 33.506 -0.417 -0.914 -0.780 -0.094 C9 VJV 24 VJV N2 N3 N 0 1 Y N N 73.366 34.506 -1.110 -1.373 -1.901 -0.693 N2 VJV 25 VJV C21 C20 C 0 1 Y N N 73.383 35.575 -0.247 -2.722 -1.754 -0.858 C21 VJV 26 VJV C10 C21 C 0 1 Y N N 73.907 35.213 0.970 -3.047 -0.536 -0.349 C10 VJV 27 VJV N N4 N 0 1 Y N N 74.214 33.889 0.840 -1.914 0.030 0.115 N VJV 28 VJV C11 C22 C 0 1 Y N N 74.178 36.000 2.182 -4.404 0.061 -0.306 C11 VJV 29 VJV C20 C23 C 0 1 Y N N 74.481 35.362 3.358 -4.586 1.316 0.244 C20 VJV 30 VJV C19 C24 C 0 1 Y N N 74.756 36.088 4.537 -5.872 1.873 0.281 C19 VJV 31 VJV C14 C25 C 0 1 Y N N 74.725 37.496 4.485 -6.969 1.146 -0.246 C14 VJV 32 VJV C13 C26 C 0 1 Y N N 74.412 38.128 3.261 -6.749 -0.129 -0.799 C13 VJV 33 VJV C12 C27 C 0 1 Y N N 74.144 37.395 2.145 -5.495 -0.651 -0.831 C12 VJV 34 VJV C18 C28 C 0 1 Y N N 75.045 35.487 5.779 -6.100 3.149 0.832 C18 VJV 35 VJV C17 C29 C 0 1 Y N N 75.283 36.267 6.868 -7.378 3.631 0.834 C17 VJV 36 VJV C15 C30 C 0 1 Y N N 75.241 37.667 6.746 -8.411 2.864 0.300 C15 VJV 37 VJV N1 N5 N 0 1 Y N N 74.967 38.267 5.594 -8.195 1.677 -0.212 N1 VJV 38 VJV C16 C31 C 0 1 N N N 75.542 38.553 7.917 -9.814 3.413 0.312 C16 VJV 39 VJV H1 H1 H 0 1 N N N 77.561 30.277 -0.280 3.688 -2.927 -1.188 H1 VJV 40 VJV H2 H2 H 0 1 N N N 79.588 30.720 0.918 4.036 -5.329 -1.286 H2 VJV 41 VJV H3 H3 H 0 1 N N N 80.587 32.193 0.671 3.755 -6.428 0.090 H3 VJV 42 VJV H4 H4 H 0 1 N N N 77.943 32.003 2.180 1.620 -5.141 -1.676 H4 VJV 43 VJV H5 H5 H 0 1 N N N 79.577 32.227 2.890 2.077 -6.861 -1.653 H5 VJV 44 VJV H7 H7 H 0 1 N N N 78.835 34.268 3.972 -0.017 -7.709 -0.952 H7 VJV 45 VJV H8 H8 H 0 1 N N N 78.198 35.631 2.990 -0.901 -6.926 0.380 H8 VJV 46 VJV H9 H9 H 0 1 N N N 77.195 34.163 3.247 -0.673 -6.068 -1.163 H9 VJV 47 VJV H10 H10 H 0 1 N N N 77.959 35.359 0.543 0.458 -4.177 0.150 H10 VJV 48 VJV H11 H11 H 0 1 N N N 76.969 33.880 0.788 0.026 -5.161 1.569 H11 VJV 49 VJV H12 H12 H 0 1 N N N 79.573 34.114 -0.788 2.387 -5.294 2.239 H12 VJV 50 VJV H13 H13 H 0 1 N N N 77.923 33.868 -1.454 1.932 -3.584 2.022 H13 VJV 51 VJV H14 H14 H 0 1 N N N 79.680 30.477 -1.691 5.386 -3.920 0.417 H14 VJV 52 VJV H15 H15 H 0 1 N N N 78.939 31.770 -2.693 4.481 -3.170 1.838 H15 VJV 53 VJV H16 H16 H 0 1 N N N 75.394 31.041 0.207 1.079 -2.126 -0.984 H16 VJV 54 VJV H17 H17 H 0 1 N N N 73.857 32.143 -2.059 0.611 -0.451 1.362 H17 VJV 55 VJV H18 H18 H 0 1 N N N 73.062 30.205 -0.672 0.966 0.722 -1.432 H18 VJV 56 VJV H19 H19 H 0 1 N N N 72.959 31.316 0.736 0.288 1.606 -0.043 H19 VJV 57 VJV H20 H20 H 0 1 N N N 71.261 32.652 -0.433 2.390 1.236 1.219 H20 VJV 58 VJV H21 H21 H 0 1 N N N 71.373 31.560 -1.855 3.068 0.352 -0.169 H21 VJV 59 VJV H22 H22 H 0 1 N N N 70.705 29.666 -0.352 2.830 2.380 -1.577 H22 VJV 60 VJV H23 H23 H 0 1 N N N 70.418 30.873 0.947 2.152 3.263 -0.188 H23 VJV 61 VJV H24 H24 H 0 1 N N N 68.670 31.938 -0.451 4.254 2.893 1.074 H24 VJV 62 VJV H25 H25 H 0 1 N N N 68.939 30.691 -1.716 4.932 2.010 -0.314 H25 VJV 63 VJV H26 H26 H 0 1 N N N 68.509 28.969 0.172 4.694 4.037 -1.721 H26 VJV 64 VJV H27 H27 H 0 1 N N N 67.848 30.356 1.102 4.016 4.921 -0.333 H27 VJV 65 VJV H28 H28 H 0 1 N N N 65.899 31.422 0.065 5.532 5.268 1.608 H28 VJV 66 VJV H29 H29 H 0 1 N N N 67.267 28.266 -1.678 7.055 3.284 -1.509 H29 VJV 67 VJV H30 H30 H 0 1 N N N 64.733 28.854 -0.295 6.558 5.695 -1.866 H30 VJV 68 VJV H31 H31 H 0 1 N N N 66.118 27.845 0.244 5.880 6.579 -0.478 H31 VJV 69 VJV H32 H32 H 0 1 N N N 64.777 28.620 2.149 7.982 6.208 0.785 H32 VJV 70 VJV H33 H33 H 0 1 N N N 66.432 29.318 2.195 8.660 5.325 -0.604 H33 VJV 71 VJV H34 H34 H 0 1 N N N 65.047 30.327 1.656 8.297 7.062 -0.745 H34 VJV 72 VJV H35 H35 H 0 1 N N N 73.042 34.491 -2.056 -0.843 -2.668 -0.958 H35 VJV 73 VJV H36 H36 H 0 1 N N N 73.032 36.566 -0.492 -3.399 -2.467 -1.305 H36 VJV 74 VJV H38 H38 H 0 1 N N N 74.510 34.283 3.382 -3.744 1.863 0.644 H38 VJV 75 VJV H39 H39 H 0 1 N N N 74.385 39.206 3.210 -7.578 -0.692 -1.203 H39 VJV 76 VJV H40 H40 H 0 1 N N N 73.902 37.899 1.221 -5.336 -1.628 -1.261 H40 VJV 77 VJV H41 H41 H 0 1 N N N 75.077 34.411 5.866 -5.287 3.730 1.242 H41 VJV 78 VJV H42 H42 H 0 1 N N N 75.503 35.812 7.823 -7.588 4.606 1.250 H42 VJV 79 VJV H43 H43 H 0 1 N N N 75.481 39.606 7.606 -9.993 3.973 -0.606 H43 VJV 80 VJV H44 H44 H 0 1 N N N 74.811 38.364 8.717 -10.526 2.590 0.381 H44 VJV 81 VJV H45 H45 H 0 1 N N N 76.555 38.338 8.288 -9.938 4.074 1.170 H45 VJV 82 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VJV O2 C22 DOUB N N 1 VJV O C2 SING N N 2 VJV C24 C23 SING N N 3 VJV C24 C25 SING N N 4 VJV C22 C23 SING N N 5 VJV C22 N3 SING N N 6 VJV N2 C9 SING Y N 7 VJV N2 C21 SING Y N 8 VJV C8 N3 SING N N 9 VJV C8 C9 SING N N 10 VJV C8 C7 SING N N 11 VJV C23 C25 SING N N 12 VJV O1 C2 SING N N 13 VJV C6 C7 SING N N 14 VJV C6 C5 SING N N 15 VJV C4 C5 SING N N 16 VJV C4 C3 SING N N 17 VJV C26 C25 SING N N 18 VJV C26 C27 SING N N 19 VJV C2 C3 SING N N 20 VJV C2 C1 SING N N 21 VJV C25 C30 SING N N 22 VJV C9 N DOUB Y N 23 VJV C21 C10 DOUB Y N 24 VJV C1 C SING N N 25 VJV C27 N4 SING N N 26 VJV C30 C29 SING N N 27 VJV N C10 SING Y N 28 VJV C10 C11 SING N N 29 VJV N4 C29 SING N N 30 VJV N4 C28 SING N N 31 VJV C12 C11 DOUB Y N 32 VJV C12 C13 SING Y N 33 VJV C11 C20 SING Y N 34 VJV C13 C14 DOUB Y N 35 VJV C20 C19 DOUB Y N 36 VJV C14 C19 SING Y N 37 VJV C14 N1 SING Y N 38 VJV C19 C18 SING Y N 39 VJV N1 C15 DOUB Y N 40 VJV C18 C17 DOUB Y N 41 VJV C15 C17 SING Y N 42 VJV C15 C16 SING N N 43 VJV C23 H1 SING N N 44 VJV C30 H2 SING N N 45 VJV C30 H3 SING N N 46 VJV C29 H4 SING N N 47 VJV C29 H5 SING N N 48 VJV C28 H7 SING N N 49 VJV C28 H8 SING N N 50 VJV C28 H9 SING N N 51 VJV C27 H10 SING N N 52 VJV C27 H11 SING N N 53 VJV C26 H12 SING N N 54 VJV C26 H13 SING N N 55 VJV C24 H14 SING N N 56 VJV C24 H15 SING N N 57 VJV N3 H16 SING N N 58 VJV C8 H17 SING N N 59 VJV C7 H18 SING N N 60 VJV C7 H19 SING N N 61 VJV C6 H20 SING N N 62 VJV C6 H21 SING N N 63 VJV C5 H22 SING N N 64 VJV C5 H23 SING N N 65 VJV C4 H24 SING N N 66 VJV C4 H25 SING N N 67 VJV C3 H26 SING N N 68 VJV C3 H27 SING N N 69 VJV O1 H28 SING N N 70 VJV O H29 SING N N 71 VJV C1 H30 SING N N 72 VJV C1 H31 SING N N 73 VJV C H32 SING N N 74 VJV C H33 SING N N 75 VJV C H34 SING N N 76 VJV N2 H35 SING N N 77 VJV C21 H36 SING N N 78 VJV C20 H38 SING N N 79 VJV C13 H39 SING N N 80 VJV C12 H40 SING N N 81 VJV C18 H41 SING N N 82 VJV C17 H42 SING N N 83 VJV C16 H43 SING N N 84 VJV C16 H44 SING N N 85 VJV C16 H45 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VJV SMILES ACDLabs 12.01 "O=C(C2C1(CCN(C)CC1)C2)NC(c3nc(cn3)c5cc4ccc(C)nc4cc5)CCCCCC(CC)(O)O" VJV InChI InChI 1.03 "InChI=1S/C31H43N5O3/c1-4-31(38,39)13-7-5-6-8-26(35-29(37)24-19-30(24)14-16-36(3)17-15-30)28-32-20-27(34-28)23-11-12-25-22(18-23)10-9-21(2)33-25/h9-12,18,20,24,26,38-39H,4-8,13-17,19H2,1-3H3,(H,32,34)(H,35,37)/t24-,26+/m1/s1" VJV InChIKey InChI 1.03 TUQSZAQBKOXAIB-RSXGOPAZSA-N VJV SMILES_CANONICAL CACTVS 3.385 "CCC(O)(O)CCCCC[C@H](NC(=O)[C@H]1CC12CCN(C)CC2)c3[nH]cc(n3)c4ccc5nc(C)ccc5c4" VJV SMILES CACTVS 3.385 "CCC(O)(O)CCCCC[CH](NC(=O)[CH]1CC12CCN(C)CC2)c3[nH]cc(n3)c4ccc5nc(C)ccc5c4" VJV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(CCCCC[C@@H](c1[nH]cc(n1)c2ccc3c(c2)ccc(n3)C)NC(=O)[C@H]4CC45CCN(CC5)C)(O)O" VJV SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CCCCCC(c1[nH]cc(n1)c2ccc3c(c2)ccc(n3)C)NC(=O)C4CC45CCN(CC5)C)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VJV "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-N-{(1S)-7,7-dihydroxy-1-[4-(2-methylquinolin-6-yl)-1H-imidazol-2-yl]nonyl}-6-methyl-6-azaspiro[2.5]octane-1-carboxamide" VJV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-6-methyl-~{N}-[(1~{S})-1-[4-(2-methylquinolin-6-yl)-1~{H}-imidazol-2-yl]-7,7-bis(oxidanyl)nonyl]-6-azaspiro[2.5]octane-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VJV "Create component" 2020-08-17 RCSB VJV "Initial release" 2021-08-11 RCSB ##