data_VKV # _chem_comp.id VKV _chem_comp.name "2-{[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraen-1-yl]oxy}propane-1,3-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H40 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-Arachidonyl Glycerol Ether" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-24 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.562 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VKV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JVY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VKV C10 C1 C 0 1 N N N 10.026 6.211 -4.541 7.789 -1.223 -0.901 C10 VKV 1 VKV C15 C2 C 0 1 N N N 9.335 7.213 -3.608 7.275 -2.664 -0.921 C15 VKV 2 VKV C17 C3 C 0 1 N N N 15.526 7.757 -11.191 -10.694 -0.574 -2.720 C17 VKV 3 VKV C21 C4 C 0 1 N N N 21.655 5.792 -9.198 -4.589 -0.288 1.328 C21 VKV 4 VKV C22 C5 C 0 1 N N N 18.024 4.760 -6.074 -0.841 3.301 0.862 C22 VKV 5 VKV O01 O1 O 0 1 N N N 11.161 6.834 -5.113 6.834 -0.385 -0.246 O01 VKV 6 VKV O03 O2 O 0 1 N N N 9.943 4.939 -6.535 8.952 -1.730 1.156 O03 VKV 7 VKV C04 C6 C 0 1 N N N 13.435 5.900 -5.322 4.894 1.054 -0.320 C04 VKV 8 VKV C05 C7 C 0 1 N N N 13.581 6.783 -6.580 3.850 1.659 -1.260 C05 VKV 9 VKV C06 C8 C 0 1 N N N 12.359 6.547 -4.369 5.859 0.181 -1.124 C06 VKV 10 VKV C07 C9 C 0 1 N N N 19.073 9.153 -10.700 -7.839 -1.873 -0.487 C07 VKV 11 VKV C08 C10 C 0 1 N N N 17.825 8.298 -10.443 -8.932 -0.924 -0.984 C08 VKV 12 VKV C11 C11 C 0 1 N N N 20.319 8.375 -10.109 -7.170 -1.275 0.752 C11 VKV 13 VKV C12 C12 C 0 1 N N N 16.532 8.877 -11.038 -9.601 -1.522 -2.223 C12 VKV 14 VKV C14 C13 C 0 1 N N N 9.123 5.731 -5.679 9.119 -1.166 -0.146 C14 VKV 15 VKV C16 C14 C 0 1 N N N 20.801 7.245 -11.102 -6.094 -2.209 1.242 C16 VKV 16 VKV C19 C15 C 0 1 N N N 17.855 6.164 -6.747 0.140 2.379 0.185 C19 VKV 17 VKV C23 C16 C 0 1 N N N 21.583 4.250 -8.990 -3.889 0.176 2.579 C23 VKV 18 VKV C09 C17 C 0 1 N N N 15.063 6.809 -7.005 2.885 2.532 -0.455 C09 VKV 19 VKV C13 C18 C 0 1 N N N 15.885 7.452 -5.892 1.856 3.129 -1.381 C13 VKV 20 VKV C18 C19 C 0 1 N N N 17.203 7.145 -5.769 0.580 2.986 -1.122 C18 VKV 21 VKV C20 C20 C 0 1 N N N 21.396 6.098 -10.685 -4.876 -1.763 1.431 C20 VKV 22 VKV C24 C21 C 0 1 N N N 20.387 4.792 -6.862 -2.315 1.376 1.150 C24 VKV 23 VKV C25 C22 C 0 1 N N N 19.195 4.135 -6.137 -2.011 2.849 1.242 C25 VKV 24 VKV C26 C23 C 0 1 N N N 20.977 3.778 -7.871 -2.785 0.875 2.491 C26 VKV 25 VKV O02 O3 O 0 1 N N N 9.022 8.370 -4.346 7.193 -3.159 0.417 O02 VKV 26 VKV H1 H1 H 0 1 N N N 10.334 5.338 -3.947 7.937 -0.875 -1.923 H1 VKV 27 VKV H2 H2 H 0 1 N N N 8.413 6.769 -3.205 6.287 -2.691 -1.380 H2 VKV 28 VKV H3 H3 H 0 1 N N N 10.009 7.473 -2.779 7.960 -3.286 -1.497 H3 VKV 29 VKV H4 H4 H 0 1 N N N 14.594 8.157 -11.617 -11.171 -1.000 -3.603 H4 VKV 30 VKV H5 H5 H 0 1 N N N 15.934 6.987 -11.862 -11.439 -0.435 -1.937 H5 VKV 31 VKV H6 H6 H 0 1 N N N 15.319 7.313 -10.206 -10.251 0.389 -2.975 H6 VKV 32 VKV H7 H7 H 0 1 N N N 22.652 6.159 -8.912 -5.526 0.257 1.212 H7 VKV 33 VKV H8 H8 H 0 1 N N N 20.891 6.286 -8.579 -3.951 -0.101 0.464 H8 VKV 34 VKV H9 H9 H 0 1 N N N 17.192 4.301 -5.561 -0.580 4.335 1.034 H9 VKV 35 VKV H10 H10 H 0 1 N N N 9.424 4.616 -7.262 9.757 -1.727 1.692 H10 VKV 36 VKV H11 H11 H 0 1 N N N 13.110 4.891 -5.615 5.449 1.853 0.170 H11 VKV 37 VKV H12 H12 H 0 1 N N N 14.401 5.838 -4.800 4.394 0.444 0.434 H12 VKV 38 VKV H13 H13 H 0 1 N N N 13.244 7.805 -6.354 4.349 2.269 -2.013 H13 VKV 39 VKV H14 H14 H 0 1 N N N 12.971 6.367 -7.395 3.294 0.860 -1.749 H14 VKV 40 VKV H15 H15 H 0 1 N N N 12.124 5.847 -3.554 6.358 0.790 -1.877 H15 VKV 41 VKV H16 H16 H 0 1 N N N 12.759 7.480 -3.946 5.303 -0.619 -1.614 H16 VKV 42 VKV H17 H17 H 0 1 N N N 19.206 9.307 -11.781 -8.282 -2.836 -0.232 H17 VKV 43 VKV H18 H18 H 0 1 N N N 18.969 10.128 -10.201 -7.094 -2.011 -1.271 H18 VKV 44 VKV H19 H19 H 0 1 N N N 17.691 8.201 -9.355 -9.677 -0.786 -0.200 H19 VKV 45 VKV H20 H20 H 0 1 N N N 17.992 7.303 -10.882 -8.489 0.038 -1.239 H20 VKV 46 VKV H21 H21 H 0 1 N N N 20.035 7.915 -9.151 -6.727 -0.312 0.497 H21 VKV 47 VKV H22 H22 H 0 1 N N N 21.143 9.086 -9.945 -7.915 -1.136 1.536 H22 VKV 48 VKV H23 H23 H 0 1 N N N 16.744 9.322 -12.022 -10.044 -2.485 -1.968 H23 VKV 49 VKV H24 H24 H 0 1 N N N 16.128 9.648 -10.366 -8.856 -1.661 -3.007 H24 VKV 50 VKV H25 H25 H 0 1 N N N 8.716 6.591 -6.231 9.872 -1.733 -0.694 H25 VKV 51 VKV H26 H26 H 0 1 N N N 8.295 5.127 -5.279 9.441 -0.129 -0.055 H26 VKV 52 VKV H27 H27 H 0 1 N N N 20.650 7.392 -12.161 -6.326 -3.245 1.437 H27 VKV 53 VKV H28 H28 H 0 1 N N N 18.843 6.547 -7.041 1.007 2.235 0.830 H28 VKV 54 VKV H29 H29 H 0 1 N N N 17.220 6.065 -7.640 -0.336 1.416 -0.003 H29 VKV 55 VKV H30 H30 H 0 1 N N N 22.005 3.573 -9.718 -4.299 -0.067 3.549 H30 VKV 56 VKV H31 H31 H 0 1 N N N 15.416 5.782 -7.178 2.385 1.923 0.298 H31 VKV 57 VKV H32 H32 H 0 1 N N N 15.172 7.395 -7.930 3.440 3.332 0.035 H32 VKV 58 VKV H33 H33 H 0 1 N N N 15.422 8.147 -5.206 2.171 3.675 -2.258 H33 VKV 59 VKV H34 H34 H 0 1 N N N 17.791 7.593 -4.981 -0.157 3.302 -1.845 H34 VKV 60 VKV H35 H35 H 0 1 N N N 21.699 5.372 -11.425 -4.078 -2.454 1.660 H35 VKV 61 VKV H36 H36 H 0 1 N N N 21.156 5.074 -6.128 -3.095 1.211 0.407 H36 VKV 62 VKV H37 H37 H 0 1 N N N 20.045 5.690 -7.397 -1.414 0.836 0.856 H37 VKV 63 VKV H38 H38 H 0 1 N N N 19.312 3.164 -5.679 -2.757 3.532 1.621 H38 VKV 64 VKV H39 H39 H 0 1 N N N 20.908 2.716 -7.688 -2.211 1.092 3.380 H39 VKV 65 VKV H40 H40 H 0 1 N N N 8.593 9.001 -3.780 6.873 -4.069 0.481 H40 VKV 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VKV C17 C12 SING N N 1 VKV C16 C20 DOUB N Z 2 VKV C16 C11 SING N N 3 VKV C12 C08 SING N N 4 VKV C07 C08 SING N N 5 VKV C07 C11 SING N N 6 VKV C20 C21 SING N N 7 VKV C21 C23 SING N N 8 VKV C23 C26 DOUB N Z 9 VKV C26 C24 SING N N 10 VKV C09 C05 SING N N 11 VKV C09 C13 SING N N 12 VKV C24 C25 SING N N 13 VKV C19 C22 SING N N 14 VKV C19 C18 SING N N 15 VKV C05 C04 SING N N 16 VKV O03 C14 SING N N 17 VKV C25 C22 DOUB N Z 18 VKV C13 C18 DOUB N Z 19 VKV C14 C10 SING N N 20 VKV C04 C06 SING N N 21 VKV O01 C10 SING N N 22 VKV O01 C06 SING N N 23 VKV C10 C15 SING N N 24 VKV O02 C15 SING N N 25 VKV C10 H1 SING N N 26 VKV C15 H2 SING N N 27 VKV C15 H3 SING N N 28 VKV C17 H4 SING N N 29 VKV C17 H5 SING N N 30 VKV C17 H6 SING N N 31 VKV C21 H7 SING N N 32 VKV C21 H8 SING N N 33 VKV C22 H9 SING N N 34 VKV O03 H10 SING N N 35 VKV C04 H11 SING N N 36 VKV C04 H12 SING N N 37 VKV C05 H13 SING N N 38 VKV C05 H14 SING N N 39 VKV C06 H15 SING N N 40 VKV C06 H16 SING N N 41 VKV C07 H17 SING N N 42 VKV C07 H18 SING N N 43 VKV C08 H19 SING N N 44 VKV C08 H20 SING N N 45 VKV C11 H21 SING N N 46 VKV C11 H22 SING N N 47 VKV C12 H23 SING N N 48 VKV C12 H24 SING N N 49 VKV C14 H25 SING N N 50 VKV C14 H26 SING N N 51 VKV C16 H27 SING N N 52 VKV C19 H28 SING N N 53 VKV C19 H29 SING N N 54 VKV C23 H30 SING N N 55 VKV C09 H31 SING N N 56 VKV C09 H32 SING N N 57 VKV C13 H33 SING N N 58 VKV C18 H34 SING N N 59 VKV C20 H35 SING N N 60 VKV C24 H36 SING N N 61 VKV C24 H37 SING N N 62 VKV C25 H38 SING N N 63 VKV C26 H39 SING N N 64 VKV O02 H40 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VKV SMILES ACDLabs 12.01 "C(CO)(OCCCC\C=C/C\C=C/C/C=C\C/C=C\CCCCC)CO" VKV InChI InChI 1.03 "InChI=1S/C23H40O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-26-23(21-24)22-25/h6-7,9-10,12-13,15-16,23-25H,2-5,8,11,14,17-22H2,1H3/b7-6-,10-9-,13-12-,16-15-" VKV InChIKey InChI 1.03 CUJUUWXZAQHCNC-DOFZRALJSA-N VKV SMILES_CANONICAL CACTVS 3.385 "CCCCC\C=C/C/C=C\C\C=C/C\C=C/CCCCOC(CO)CO" VKV SMILES CACTVS 3.385 "CCCCCC=CCC=CCC=CCC=CCCCCOC(CO)CO" VKV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC/C=C\C/C=C\C/C=C\C/C=C\CCCCOC(CO)CO" VKV SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC=CCC=CCC=CCC=CCCCCOC(CO)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VKV "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraen-1-yl]oxy}propane-1,3-diol" VKV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(5~{Z},8~{Z},11~{Z},14~{Z})-icosa-5,8,11,14-tetraenoxy]propane-1,3-diol" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VKV _pdbx_chem_comp_synonyms.name "2-Arachidonyl Glycerol Ether" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VKV "Create component" 2020-08-24 RCSB VKV "Modify synonyms" 2021-03-01 PDBE VKV "Initial release" 2021-03-10 RCSB ##