data_VM4 # _chem_comp.id VM4 _chem_comp.name "6-{[(1R)-1-(3-hydroxyphenyl)ethyl]sulfanyl}-1-methyl-5-phenyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2020-12-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VM4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VM4 O11 O1 O 0 1 N N N 37.322 -15.179 17.782 -4.190 0.800 -0.264 O11 VM4 1 VM4 C1 C1 C 0 1 N N N 37.346 -15.796 16.692 -3.194 0.105 -0.166 C1 VM4 2 VM4 N2 N1 N 0 1 N N N 38.581 -16.064 16.035 -1.965 0.661 -0.080 N2 VM4 3 VM4 C12 C2 C 0 1 Y N N 39.759 -15.564 16.634 -1.827 2.055 -0.105 C12 VM4 4 VM4 C13 C3 C 0 1 Y N N 40.034 -14.203 16.461 -1.853 2.777 1.081 C13 VM4 5 VM4 C14 C4 C 0 1 Y N N 41.171 -13.634 17.023 -1.717 4.152 1.054 C14 VM4 6 VM4 C15 C5 C 0 1 Y N N 42.042 -14.422 17.773 -1.555 4.808 -0.153 C15 VM4 7 VM4 C16 C6 C 0 1 Y N N 41.766 -15.782 17.953 -1.529 4.092 -1.335 C16 VM4 8 VM4 C17 C7 C 0 1 Y N N 40.622 -16.349 17.384 -1.659 2.717 -1.314 C17 VM4 9 VM4 C3 C8 C 0 1 N N N 38.606 -16.762 14.788 -0.856 -0.131 0.030 C3 VM4 10 VM4 N4 N2 N 0 1 N N N 37.419 -17.210 14.195 -0.936 -1.442 0.056 N4 VM4 11 VM4 C5 C9 C 0 1 Y N N 36.197 -16.990 14.789 -2.118 -2.067 -0.024 C5 VM4 12 VM4 N9 N3 N 0 1 Y N N 34.940 -17.296 14.461 -2.496 -3.374 -0.022 N9 VM4 13 VM4 C10 C10 C 0 1 N N N 34.378 -18.019 13.291 -1.598 -4.527 0.080 C10 VM4 14 VM4 N8 N4 N 0 1 Y N N 34.001 -16.838 15.417 -3.891 -3.428 -0.134 N8 VM4 15 VM4 C7 C11 C 0 1 Y N N 34.699 -16.217 16.396 -4.371 -2.218 -0.203 C7 VM4 16 VM4 C6 C12 C 0 1 Y N N 36.084 -16.275 16.065 -3.296 -1.309 -0.132 C6 VM4 17 VM4 S18 S1 S 0 1 N N N 40.082 -17.070 13.992 0.729 0.631 0.139 S18 VM4 18 VM4 C19 C13 C 0 1 N N R 39.946 -18.365 12.782 1.777 -0.840 0.262 C19 VM4 19 VM4 C26 C14 C 0 1 N N N 40.050 -19.740 13.455 1.471 -1.576 1.567 C26 VM4 20 VM4 C20 C15 C 0 1 Y N N 40.999 -18.169 11.764 3.226 -0.427 0.244 C20 VM4 21 VM4 C21 C16 C 0 1 Y N N 40.678 -17.967 10.417 3.717 0.410 1.228 C21 VM4 22 VM4 C22 C17 C 0 1 Y N N 41.702 -17.777 9.483 5.048 0.786 1.219 C22 VM4 23 VM4 C23 C18 C 0 1 Y N N 43.036 -17.793 9.891 5.890 0.325 0.225 C23 VM4 24 VM4 C24 C19 C 0 1 Y N N 43.346 -17.996 11.237 5.399 -0.515 -0.764 C24 VM4 25 VM4 O24 O2 O 0 1 N N N 44.619 -18.019 11.703 6.225 -0.970 -1.742 O24 VM4 26 VM4 C25 C20 C 0 1 Y N N 42.332 -18.178 12.162 4.064 -0.891 -0.752 C25 VM4 27 VM4 H1 H1 H 0 1 N N N 39.357 -13.589 15.886 -1.980 2.265 2.023 H1 VM4 28 VM4 H2 H2 H 0 1 N N N 41.379 -12.584 16.879 -1.737 4.714 1.976 H2 VM4 29 VM4 H3 H3 H 0 1 N N N 42.926 -13.985 18.213 -1.449 5.883 -0.171 H3 VM4 30 VM4 H4 H4 H 0 1 N N N 42.439 -16.396 18.533 -1.403 4.607 -2.275 H4 VM4 31 VM4 H5 H5 H 0 1 N N N 40.410 -17.398 17.528 -1.635 2.157 -2.237 H5 VM4 32 VM4 H6 H6 H 0 1 N N N 33.283 -18.071 13.383 -1.459 -4.787 1.129 H6 VM4 33 VM4 H7 H7 H 0 1 N N N 34.644 -17.484 12.367 -2.033 -5.374 -0.450 H7 VM4 34 VM4 H8 H8 H 0 1 N N N 34.791 -19.038 13.257 -0.634 -4.277 -0.364 H8 VM4 35 VM4 H9 H9 H 0 1 N N N 34.278 -15.756 17.278 -5.414 -1.957 -0.295 H9 VM4 36 VM4 H10 H10 H 0 1 N N N 38.952 -18.260 12.322 1.577 -1.500 -0.583 H10 VM4 37 VM4 H11 H11 H 0 1 N N N 39.250 -19.844 14.203 1.671 -0.916 2.412 H11 VM4 38 VM4 H12 H12 H 0 1 N N N 39.946 -20.529 12.695 0.423 -1.875 1.580 H12 VM4 39 VM4 H13 H13 H 0 1 N N N 41.028 -19.833 13.949 2.102 -2.462 1.641 H13 VM4 40 VM4 H14 H14 H 0 1 N N N 39.646 -17.958 10.100 3.061 0.772 2.006 H14 VM4 41 VM4 H15 H15 H 0 1 N N N 41.459 -17.617 8.443 5.429 1.441 1.988 H15 VM4 42 VM4 H16 H16 H 0 1 N N N 43.826 -17.649 9.169 6.929 0.619 0.218 H16 VM4 43 VM4 H17 H17 H 0 1 N N N 44.611 -18.170 12.641 6.666 -1.804 -1.528 H17 VM4 44 VM4 H18 H18 H 0 1 N N N 42.578 -18.328 13.203 3.681 -1.549 -1.518 H18 VM4 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VM4 C22 C23 DOUB Y N 1 VM4 C22 C21 SING Y N 2 VM4 C23 C24 SING Y N 3 VM4 C21 C20 DOUB Y N 4 VM4 C24 O24 SING N N 5 VM4 C24 C25 DOUB Y N 6 VM4 C20 C25 SING Y N 7 VM4 C20 C19 SING N N 8 VM4 C19 C26 SING N N 9 VM4 C19 S18 SING N N 10 VM4 C10 N9 SING N N 11 VM4 S18 C3 SING N N 12 VM4 N4 C3 DOUB N N 13 VM4 N4 C5 SING N N 14 VM4 N9 C5 SING Y N 15 VM4 N9 N8 SING Y N 16 VM4 C3 N2 SING N N 17 VM4 C5 C6 DOUB Y N 18 VM4 N8 C7 DOUB Y N 19 VM4 N2 C12 SING N N 20 VM4 N2 C1 SING N N 21 VM4 C6 C7 SING Y N 22 VM4 C6 C1 SING N N 23 VM4 C13 C12 DOUB Y N 24 VM4 C13 C14 SING Y N 25 VM4 C12 C17 SING Y N 26 VM4 C1 O11 DOUB N N 27 VM4 C14 C15 DOUB Y N 28 VM4 C17 C16 DOUB Y N 29 VM4 C15 C16 SING Y N 30 VM4 C13 H1 SING N N 31 VM4 C14 H2 SING N N 32 VM4 C15 H3 SING N N 33 VM4 C16 H4 SING N N 34 VM4 C17 H5 SING N N 35 VM4 C10 H6 SING N N 36 VM4 C10 H7 SING N N 37 VM4 C10 H8 SING N N 38 VM4 C7 H9 SING N N 39 VM4 C19 H10 SING N N 40 VM4 C26 H11 SING N N 41 VM4 C26 H12 SING N N 42 VM4 C26 H13 SING N N 43 VM4 C21 H14 SING N N 44 VM4 C22 H15 SING N N 45 VM4 C23 H16 SING N N 46 VM4 O24 H17 SING N N 47 VM4 C25 H18 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VM4 SMILES ACDLabs 12.01 "O=C2N(c1ccccc1)C(=Nc3c2cnn3C)SC(C)c4cc(ccc4)O" VM4 InChI InChI 1.03 "InChI=1S/C20H18N4O2S/c1-13(14-7-6-10-16(25)11-14)27-20-22-18-17(12-21-23(18)2)19(26)24(20)15-8-4-3-5-9-15/h3-13,25H,1-2H3/t13-/m1/s1" VM4 InChIKey InChI 1.03 RTSMRTUJWIBZAN-CYBMUJFWSA-N VM4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](SC1=Nc2n(C)ncc2C(=O)N1c3ccccc3)c4cccc(O)c4" VM4 SMILES CACTVS 3.385 "C[CH](SC1=Nc2n(C)ncc2C(=O)N1c3ccccc3)c4cccc(O)c4" VM4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1cccc(c1)O)SC2=Nc3c(cnn3C)C(=O)N2c4ccccc4" VM4 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc(c1)O)SC2=Nc3c(cnn3C)C(=O)N2c4ccccc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VM4 "SYSTEMATIC NAME" ACDLabs 12.01 "6-{[(1R)-1-(3-hydroxyphenyl)ethyl]sulfanyl}-1-methyl-5-phenyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" VM4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[(1~{R})-1-(3-hydroxyphenyl)ethyl]sulfanyl-1-methyl-5-phenyl-pyrazolo[3,4-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VM4 "Create component" 2020-08-27 RCSB VM4 "Initial release" 2020-12-30 RCSB ##