data_VMG # _chem_comp.id VMG _chem_comp.name "5-{4-[(Z)-2-hydroxyethenyl]phenyl}-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2020-12-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 406.501 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMG O11 O1 O 0 1 N N N 37.175 -15.184 17.592 -1.801 3.232 0.076 O11 VMG 1 VMG C1 C1 C 0 1 N N N 37.277 -15.855 16.543 -0.701 2.708 0.057 C1 VMG 2 VMG C6 C2 C 0 1 Y N N 36.054 -16.378 15.894 0.479 3.493 0.062 C6 VMG 3 VMG C7 C3 C 0 1 Y N N 34.674 -16.274 16.232 0.736 4.879 0.085 C7 VMG 4 VMG N8 N1 N 0 1 Y N N 33.975 -16.938 15.293 2.027 5.058 0.078 N8 VMG 5 VMG N9 N2 N 0 1 Y N N 34.945 -17.446 14.397 2.672 3.816 0.050 N9 VMG 6 VMG C10 C4 C 0 1 N N N 34.402 -18.225 13.261 4.122 3.602 0.034 C10 VMG 7 VMG C5 C5 C 0 1 Y N N 36.196 -17.116 14.737 1.723 2.842 0.040 C5 VMG 8 VMG N4 N3 N 0 1 N N N 37.446 -17.370 14.184 1.766 1.503 0.014 N4 VMG 9 VMG C3 C6 C 0 1 N N N 38.613 -16.887 14.774 0.665 0.786 0.010 C3 VMG 10 VMG S18 S1 S 0 1 N N N 40.106 -17.227 14.046 0.789 -0.971 -0.023 S18 VMG 11 VMG C19 C7 C 0 1 N N R 39.846 -18.359 12.705 2.589 -1.158 -0.041 C19 VMG 12 VMG C20 C8 C 0 1 Y N N 40.863 -18.178 11.639 2.943 -2.620 0.053 C20 VMG 13 VMG C25 C9 C 0 1 Y N N 42.222 -18.236 11.949 3.705 -3.080 1.111 C25 VMG 14 VMG C24 C10 C 0 1 Y N N 43.179 -18.077 10.955 4.030 -4.421 1.197 C24 VMG 15 VMG C23 C11 C 0 1 Y N N 42.795 -17.872 9.638 3.593 -5.302 0.225 C23 VMG 16 VMG C22 C12 C 0 1 Y N N 41.440 -17.820 9.316 2.832 -4.842 -0.832 C22 VMG 17 VMG C21 C13 C 0 1 Y N N 40.472 -17.979 10.314 2.501 -3.502 -0.915 C21 VMG 18 VMG C26 C14 C 0 1 N N N 39.897 -19.797 13.233 3.149 -0.581 -1.343 C26 VMG 19 VMG N2 N4 N 0 1 N N N 38.550 -16.132 15.966 -0.575 1.362 0.036 N2 VMG 20 VMG C12 C15 C 0 1 Y N N 39.675 -15.571 16.601 -1.720 0.554 0.031 C12 VMG 21 VMG C17 C16 C 0 1 Y N N 40.674 -16.290 17.244 -2.279 0.133 1.230 C17 VMG 22 VMG C16 C17 C 0 1 Y N N 41.731 -15.606 17.853 -3.408 -0.663 1.221 C16 VMG 23 VMG C15 C18 C 0 1 Y N N 41.812 -14.205 17.808 -3.980 -1.041 0.020 C15 VMG 24 VMG C14 C19 C 0 1 Y N N 40.789 -13.504 17.179 -3.425 -0.623 -1.175 C14 VMG 25 VMG C13 C20 C 0 1 Y N N 39.744 -14.176 16.573 -2.300 0.178 -1.173 C13 VMG 26 VMG C27 C21 C 0 1 N N N 42.852 -13.496 18.591 -5.212 -1.910 0.014 C27 VMG 27 VMG C28 C22 C 0 1 N N N 42.536 -12.285 19.475 -6.460 -1.025 0.038 C28 VMG 28 VMG O28 O2 O 0 1 N N N 41.266 -11.912 19.589 -7.628 -1.849 0.033 O28 VMG 29 VMG H1 H1 H 0 1 N N N 34.263 -15.756 17.086 -0.010 5.660 0.105 H1 VMG 30 VMG H2 H2 H 0 1 N N N 33.305 -18.262 13.332 4.472 3.567 -0.998 H2 VMG 31 VMG H3 H3 H 0 1 N N N 34.692 -17.744 12.315 4.616 4.419 0.558 H3 VMG 32 VMG H4 H4 H 0 1 N N N 34.806 -19.248 13.291 4.355 2.659 0.528 H4 VMG 33 VMG H5 H5 H 0 1 N N N 38.842 -18.151 12.307 3.019 -0.625 0.807 H5 VMG 34 VMG H6 H6 H 0 1 N N N 42.532 -18.406 12.969 4.046 -2.392 1.870 H6 VMG 35 VMG H7 H7 H 0 1 N N N 44.228 -18.113 11.209 4.625 -4.780 2.023 H7 VMG 36 VMG H8 H8 H 0 1 N N N 43.542 -17.753 8.867 3.848 -6.350 0.292 H8 VMG 37 VMG H9 H9 H 0 1 N N N 41.136 -17.656 8.293 2.491 -5.530 -1.592 H9 VMG 38 VMG H10 H10 H 0 1 N N N 39.423 -17.948 10.059 1.906 -3.143 -1.742 H10 VMG 39 VMG H11 H11 H 0 1 N N N 39.142 -19.925 14.022 2.720 -1.114 -2.191 H11 VMG 40 VMG H12 H12 H 0 1 N N N 39.690 -20.497 12.410 2.893 0.476 -1.411 H12 VMG 41 VMG H13 H13 H 0 1 N N N 40.896 -20.001 13.645 4.233 -0.694 -1.353 H13 VMG 42 VMG H14 H14 H 0 1 N N N 40.635 -17.369 17.274 -1.832 0.427 2.168 H14 VMG 43 VMG H15 H15 H 0 1 N N N 42.499 -16.165 18.367 -3.844 -0.991 2.153 H15 VMG 44 VMG H16 H16 H 0 1 N N N 40.811 -12.424 17.164 -3.874 -0.920 -2.112 H16 VMG 45 VMG H17 H17 H 0 1 N N N 38.970 -13.615 16.071 -1.869 0.508 -2.107 H17 VMG 46 VMG H18 H18 H 0 1 N N N 43.301 -14.250 19.255 -5.219 -2.524 -0.886 H18 VMG 47 VMG H19 H19 H 0 1 N N N 42.902 -12.514 20.487 -6.453 -0.411 0.939 H19 VMG 48 VMG H20 H20 H 0 1 N N N 41.208 -11.155 20.160 -8.458 -1.355 0.047 H20 VMG 49 VMG H21 H21 H 0 1 N N N 43.603 -13.155 17.863 -5.206 -2.554 0.893 H21 VMG 50 VMG H22 H22 H 0 1 N N N 43.094 -11.428 19.068 -6.466 -0.381 -0.841 H22 VMG 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMG C22 C23 DOUB Y N 1 VMG C22 C21 SING Y N 2 VMG C23 C24 SING Y N 3 VMG C21 C20 DOUB Y N 4 VMG C24 C25 DOUB Y N 5 VMG C20 C25 SING Y N 6 VMG C20 C19 SING N N 7 VMG C19 C26 SING N N 8 VMG C19 S18 SING N N 9 VMG C10 N9 SING N N 10 VMG S18 C3 SING N N 11 VMG N4 C5 SING N N 12 VMG N4 C3 DOUB N N 13 VMG N9 C5 SING Y N 14 VMG N9 N8 SING Y N 15 VMG C5 C6 DOUB Y N 16 VMG C3 N2 SING N N 17 VMG N8 C7 DOUB Y N 18 VMG C6 C7 SING Y N 19 VMG C6 C1 SING N N 20 VMG N2 C1 SING N N 21 VMG N2 C12 SING N N 22 VMG C1 O11 DOUB N N 23 VMG C13 C12 DOUB Y N 24 VMG C13 C14 SING Y N 25 VMG C12 C17 SING Y N 26 VMG C14 C15 DOUB Y N 27 VMG C17 C16 DOUB Y N 28 VMG C15 C16 SING Y N 29 VMG C15 C27 SING N N 30 VMG C27 C28 SING N N 31 VMG C28 O28 SING N N 32 VMG C7 H1 SING N N 33 VMG C10 H2 SING N N 34 VMG C10 H3 SING N N 35 VMG C10 H4 SING N N 36 VMG C19 H5 SING N N 37 VMG C25 H6 SING N N 38 VMG C24 H7 SING N N 39 VMG C23 H8 SING N N 40 VMG C22 H9 SING N N 41 VMG C21 H10 SING N N 42 VMG C26 H11 SING N N 43 VMG C26 H12 SING N N 44 VMG C26 H13 SING N N 45 VMG C17 H14 SING N N 46 VMG C16 H15 SING N N 47 VMG C14 H16 SING N N 48 VMG C13 H17 SING N N 49 VMG C27 H18 SING N N 50 VMG C28 H19 SING N N 51 VMG O28 H20 SING N N 52 VMG C27 H21 SING N N 53 VMG C28 H22 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMG SMILES ACDLabs 12.01 "O=C2c1cnn(c1N=C(N2c3ccc(CCO)cc3)SC(C)c4ccccc4)C" VMG InChI InChI 1.03 "InChI=1S/C22H22N4O2S/c1-15(17-6-4-3-5-7-17)29-22-24-20-19(14-23-25(20)2)21(28)26(22)18-10-8-16(9-11-18)12-13-27/h3-11,14-15,27H,12-13H2,1-2H3/t15-/m1/s1" VMG InChIKey InChI 1.03 ZYDLSTYFDFDODX-OAHLLOKOSA-N VMG SMILES_CANONICAL CACTVS 3.385 "C[C@@H](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CCO)cc3)c4ccccc4" VMG SMILES CACTVS 3.385 "C[CH](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CCO)cc3)c4ccccc4" VMG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CCO" VMG SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CCO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VMG "SYSTEMATIC NAME" ACDLabs 12.01 "5-[4-(2-hydroxyethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" VMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[4-(2-hydroxyethyl)phenyl]-1-methyl-6-[(1~{R})-1-phenylethyl]sulfanyl-pyrazolo[3,4-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMG "Create component" 2020-08-27 RCSB VMG "Initial release" 2020-12-30 RCSB ##