data_VMJ # _chem_comp.id VMJ _chem_comp.name "5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-27 _chem_comp.pdbx_modified_date 2020-12-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VMJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JWV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VMJ O11 O1 O 0 1 N N N 15.130 146.611 17.670 -3.744 -1.112 0.084 O11 VMJ 1 VMJ C1 C1 C 0 1 N N N 15.808 146.618 16.620 -2.923 -0.212 0.062 C1 VMJ 2 VMJ N2 N1 N 0 1 N N N 16.133 147.849 15.989 -1.599 -0.482 0.038 N2 VMJ 3 VMJ C12 C2 C 0 1 Y N N 15.600 149.043 16.498 -1.158 -1.812 0.038 C12 VMJ 4 VMJ C13 C3 C 0 1 Y N N 14.276 149.240 16.125 -0.960 -2.479 -1.163 C13 VMJ 5 VMJ C14 C4 C 0 1 Y N N 13.583 150.365 16.512 -0.525 -3.790 -1.160 C14 VMJ 6 VMJ C15 C5 C 0 1 Y N N 14.207 151.334 17.287 -0.287 -4.438 0.038 C15 VMJ 7 VMJ C27 C6 C 0 1 N N N 13.360 152.527 17.669 0.186 -5.869 0.037 C27 VMJ 8 VMJ O27 O2 O 0 1 N N N 13.627 152.977 19.000 1.615 -5.898 0.013 O27 VMJ 9 VMJ C16 C7 C 0 1 Y N N 15.551 151.149 17.666 -0.483 -3.777 1.236 C16 VMJ 10 VMJ C17 C8 C 0 1 Y N N 16.250 150.002 17.267 -0.913 -2.464 1.239 C17 VMJ 11 VMJ C3 C9 C 0 1 N N N 16.878 147.875 14.784 -0.688 0.537 0.014 C3 VMJ 12 VMJ N4 N2 N 0 1 N N N 17.367 146.707 14.207 -1.053 1.799 0.014 N4 VMJ 13 VMJ C5 C10 C 0 1 Y N N 17.114 145.475 14.785 -2.347 2.147 0.037 C5 VMJ 14 VMJ N9 N3 N 0 1 Y N N 17.430 144.214 14.485 -3.003 3.338 0.043 N9 VMJ 15 VMJ C10 C11 C 0 1 N N N 18.215 143.642 13.364 -2.378 4.662 0.023 C10 VMJ 16 VMJ N8 N4 N 0 1 Y N N 16.906 143.277 15.413 -4.379 3.081 0.072 N8 VMJ 17 VMJ C7 C12 C 0 1 Y N N 16.236 143.981 16.354 -4.583 1.794 0.084 C7 VMJ 18 VMJ C6 C13 C 0 1 Y N N 16.321 145.361 16.017 -3.332 1.145 0.056 C6 VMJ 19 VMJ S18 S1 S 0 1 N N N 17.223 149.355 14.022 1.030 0.145 -0.018 S18 VMJ 20 VMJ C19 C14 C 0 1 N N R 18.465 149.131 12.778 1.732 1.813 -0.042 C19 VMJ 21 VMJ C26 C15 C 0 1 N N N 19.861 149.219 13.412 1.342 2.512 -1.347 C26 VMJ 22 VMJ C20 C16 C 0 1 Y N N 18.282 150.153 11.714 3.234 1.728 0.052 C20 VMJ 23 VMJ C21 C17 C 0 1 Y N N 18.005 149.778 10.397 3.950 1.055 -0.919 C21 VMJ 24 VMJ C22 C18 C 0 1 Y N N 17.836 150.756 9.406 5.328 0.981 -0.835 C22 VMJ 25 VMJ C23 C19 C 0 1 Y N N 17.945 152.108 9.729 5.990 1.580 0.220 C23 VMJ 26 VMJ C24 C20 C 0 1 Y N N 18.219 152.477 11.041 5.273 2.254 1.191 C24 VMJ 27 VMJ C25 C21 C 0 1 Y N N 18.390 151.507 12.024 3.895 2.327 1.108 C25 VMJ 28 VMJ H1 H1 H 0 1 N N N 13.781 148.496 15.519 -1.146 -1.974 -2.099 H1 VMJ 29 VMJ H2 H2 H 0 1 N N N 12.553 150.494 16.213 -0.371 -4.310 -2.095 H2 VMJ 30 VMJ H3 H3 H 0 1 N N N 13.570 153.349 16.969 -0.171 -6.371 0.937 H3 VMJ 31 VMJ H4 H4 H 0 1 N N N 12.299 152.246 17.597 -0.202 -6.380 -0.843 H4 VMJ 32 VMJ H5 H5 H 0 1 N N N 13.076 153.725 19.198 1.991 -6.789 0.011 H5 VMJ 33 VMJ H6 H6 H 0 1 N N N 16.046 151.896 18.268 -0.296 -4.286 2.170 H6 VMJ 34 VMJ H7 H7 H 0 1 N N N 17.282 149.864 17.554 -1.062 -1.946 2.175 H7 VMJ 35 VMJ H8 H8 H 0 1 N N N 18.249 142.547 13.461 -2.243 4.985 -1.010 H8 VMJ 36 VMJ H9 H9 H 0 1 N N N 17.740 143.911 12.409 -3.016 5.374 0.545 H9 VMJ 37 VMJ H10 H10 H 0 1 N N N 19.238 144.044 13.390 -1.407 4.614 0.517 H10 VMJ 38 VMJ H11 H11 H 0 1 N N N 15.726 143.568 17.211 -5.547 1.307 0.106 H11 VMJ 39 VMJ H12 H12 H 0 1 N N N 18.317 148.124 12.362 1.347 2.382 0.804 H12 VMJ 40 VMJ H13 H13 H 0 1 N N N 19.959 148.450 14.192 1.765 3.516 -1.362 H13 VMJ 41 VMJ H14 H14 H 0 1 N N N 20.626 149.056 12.638 1.728 1.943 -2.193 H14 VMJ 42 VMJ H15 H15 H 0 1 N N N 19.998 150.215 13.859 0.256 2.573 -1.415 H15 VMJ 43 VMJ H16 H16 H 0 1 N N N 17.921 148.732 10.141 3.434 0.586 -1.744 H16 VMJ 44 VMJ H17 H17 H 0 1 N N N 17.621 150.461 8.390 5.888 0.454 -1.594 H17 VMJ 45 VMJ H18 H18 H 0 1 N N N 17.818 152.862 8.966 7.066 1.522 0.286 H18 VMJ 46 VMJ H19 H19 H 0 1 N N N 18.300 153.523 11.299 5.790 2.723 2.016 H19 VMJ 47 VMJ H20 H20 H 0 1 N N N 18.609 151.807 13.038 3.336 2.857 1.865 H20 VMJ 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VMJ C22 C23 DOUB Y N 1 VMJ C22 C21 SING Y N 2 VMJ C23 C24 SING Y N 3 VMJ C21 C20 DOUB Y N 4 VMJ C24 C25 DOUB Y N 5 VMJ C20 C25 SING Y N 6 VMJ C20 C19 SING N N 7 VMJ C19 C26 SING N N 8 VMJ C19 S18 SING N N 9 VMJ C10 N9 SING N N 10 VMJ S18 C3 SING N N 11 VMJ N4 C3 DOUB N N 12 VMJ N4 C5 SING N N 13 VMJ N9 C5 SING Y N 14 VMJ N9 N8 SING Y N 15 VMJ C3 N2 SING N N 16 VMJ C5 C6 DOUB Y N 17 VMJ N8 C7 DOUB Y N 18 VMJ N2 C12 SING N N 19 VMJ N2 C1 SING N N 20 VMJ C6 C7 SING Y N 21 VMJ C6 C1 SING N N 22 VMJ C13 C12 DOUB Y N 23 VMJ C13 C14 SING Y N 24 VMJ C12 C17 SING Y N 25 VMJ C14 C15 DOUB Y N 26 VMJ C1 O11 DOUB N N 27 VMJ C17 C16 DOUB Y N 28 VMJ C15 C16 SING Y N 29 VMJ C15 C27 SING N N 30 VMJ C27 O27 SING N N 31 VMJ C13 H1 SING N N 32 VMJ C14 H2 SING N N 33 VMJ C27 H3 SING N N 34 VMJ C27 H4 SING N N 35 VMJ O27 H5 SING N N 36 VMJ C16 H6 SING N N 37 VMJ C17 H7 SING N N 38 VMJ C10 H8 SING N N 39 VMJ C10 H9 SING N N 40 VMJ C10 H10 SING N N 41 VMJ C7 H11 SING N N 42 VMJ C19 H12 SING N N 43 VMJ C26 H13 SING N N 44 VMJ C26 H14 SING N N 45 VMJ C26 H15 SING N N 46 VMJ C21 H16 SING N N 47 VMJ C22 H17 SING N N 48 VMJ C23 H18 SING N N 49 VMJ C24 H19 SING N N 50 VMJ C25 H20 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VMJ SMILES ACDLabs 12.01 "O=C2N(c1ccc(cc1)CO)C(=Nc3c2cnn3C)SC(C)c4ccccc4" VMJ InChI InChI 1.03 "InChI=1S/C21H20N4O2S/c1-14(16-6-4-3-5-7-16)28-21-23-19-18(12-22-24(19)2)20(27)25(21)17-10-8-15(13-26)9-11-17/h3-12,14,26H,13H2,1-2H3/t14-/m1/s1" VMJ InChIKey InChI 1.03 CXENUIKHQIZUDG-CQSZACIVSA-N VMJ SMILES_CANONICAL CACTVS 3.385 "C[C@@H](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CO)cc3)c4ccccc4" VMJ SMILES CACTVS 3.385 "C[CH](SC1=Nc2n(C)ncc2C(=O)N1c3ccc(CO)cc3)c4ccccc4" VMJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CO" VMJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccccc1)SC2=Nc3c(cnn3C)C(=O)N2c4ccc(cc4)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VMJ "SYSTEMATIC NAME" ACDLabs 12.01 "5-[4-(hydroxymethyl)phenyl]-1-methyl-6-{[(1R)-1-phenylethyl]sulfanyl}-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one" VMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[4-(hydroxymethyl)phenyl]-1-methyl-6-[(1~{R})-1-phenylethyl]sulfanyl-pyrazolo[3,4-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VMJ "Create component" 2020-08-27 RCSB VMJ "Initial release" 2020-12-30 RCSB ##