data_VP7 # _chem_comp.id VP7 _chem_comp.name "4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-31 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.399 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VP7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JXX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VP7 N1 N1 N 0 1 Y N N 174.643 19.275 47.435 -3.774 2.894 0.183 N1 VP7 1 VP7 N3 N2 N 0 1 Y N N 176.879 19.483 46.618 -1.972 1.729 -0.695 N3 VP7 2 VP7 C4 C1 C 0 1 Y N N 175.665 18.867 46.658 -2.694 2.838 -0.583 C4 VP7 3 VP7 C5 C2 C 0 1 Y N N 177.087 20.568 47.393 -2.330 0.643 -0.028 C5 VP7 4 VP7 C6 C3 C 0 1 Y N N 178.420 21.189 47.323 -1.676 -0.669 -0.215 C6 VP7 5 VP7 C7 C4 C 0 1 Y N N 179.512 20.568 46.591 -0.280 -1.054 -0.226 C7 VP7 6 VP7 C8 C5 C 0 1 Y N N 179.685 19.376 45.876 0.907 -0.341 -0.076 C8 VP7 7 VP7 C10 C6 C 0 1 N N N 181.174 17.941 44.514 3.346 -0.399 0.007 C10 VP7 8 VP7 C13 C7 C 0 1 N N N 181.000 15.952 41.626 5.410 2.349 0.491 C13 VP7 9 VP7 C15 C8 C 0 1 Y N N 182.014 19.980 45.498 2.086 -2.459 -0.345 C15 VP7 10 VP7 C17 C9 C 0 1 Y N N 180.631 21.409 46.767 -0.276 -2.459 -0.435 C17 VP7 11 VP7 C20 C10 C 0 1 N N N 176.758 23.480 48.589 -4.532 -1.598 0.907 C20 VP7 12 VP7 C1 C11 C 0 1 N N N 176.196 22.190 49.167 -3.754 -0.515 1.665 C1 VP7 13 VP7 C11 C12 C 0 1 N N N 181.355 16.992 43.818 4.373 0.157 0.128 C11 VP7 14 VP7 C12 C13 C 0 1 N N N 181.599 15.791 43.013 5.661 0.854 0.279 C12 VP7 15 VP7 C14 C14 C 0 1 N N N 181.045 14.558 43.703 6.502 0.652 -0.983 C14 VP7 16 VP7 C16 C15 C 0 1 Y N N 181.874 21.147 46.204 0.922 -3.169 -0.495 C16 VP7 17 VP7 C18 C16 C 0 1 Y N N 178.911 22.374 47.842 -2.415 -1.796 -0.417 C18 VP7 18 VP7 C19 C17 C 0 1 N N N 178.267 23.433 48.677 -3.916 -1.793 -0.482 C19 VP7 19 VP7 C2 C18 C 0 1 Y N N 176.048 21.017 48.227 -3.436 0.686 0.832 C2 VP7 20 VP7 C3 C19 C 0 1 Y N N 174.851 20.336 48.209 -4.170 1.849 0.898 C3 VP7 21 VP7 C9 C20 C 0 1 Y N N 180.937 19.109 45.307 2.093 -1.077 -0.141 C9 VP7 22 VP7 N2 N3 N 0 1 N N N 175.467 17.779 45.903 -2.308 3.965 -1.287 N2 VP7 23 VP7 N4 N4 N 0 1 Y N N 180.233 22.482 47.516 -1.578 -2.865 -0.544 N4 VP7 24 VP7 O1 O1 O 0 1 N N N 183.021 15.620 42.867 6.359 0.324 1.407 O1 VP7 25 VP7 H1 H1 H 0 1 N N N 178.869 18.677 45.766 0.911 0.728 0.080 H1 VP7 26 VP7 H2 H2 H 0 1 N N N 179.911 16.085 41.709 4.877 2.753 -0.370 H2 VP7 27 VP7 H3 H3 H 0 1 N N N 181.440 16.833 41.137 4.810 2.493 1.390 H3 VP7 28 VP7 H4 H4 H 0 1 N N N 181.215 15.055 41.027 6.363 2.865 0.603 H4 VP7 29 VP7 H5 H5 H 0 1 N N N 182.977 19.728 45.080 3.028 -2.985 -0.387 H5 VP7 30 VP7 H6 H6 H 0 1 N N N 176.380 24.339 49.163 -4.482 -2.536 1.461 H6 VP7 31 VP7 H7 H7 H 0 1 N N N 176.451 23.579 47.537 -5.573 -1.292 0.803 H7 VP7 32 VP7 H8 H8 H 0 1 N N N 175.199 22.416 49.573 -4.345 -0.198 2.524 H8 VP7 33 VP7 H9 H9 H 0 1 N N N 176.862 21.876 49.985 -2.819 -0.945 2.026 H9 VP7 34 VP7 H10 H10 H 0 1 N N N 181.493 14.464 44.703 7.455 1.168 -0.871 H10 VP7 35 VP7 H11 H11 H 0 1 N N N 179.953 14.651 43.798 6.680 -0.412 -1.134 H11 VP7 36 VP7 H12 H12 H 0 1 N N N 181.287 13.665 43.108 5.968 1.057 -1.843 H12 VP7 37 VP7 H13 H13 H 0 1 N N N 182.698 21.836 46.318 0.934 -4.238 -0.654 H13 VP7 38 VP7 H14 H14 H 0 1 N N N 178.543 23.256 49.727 -4.258 -2.743 -0.894 H14 VP7 39 VP7 H15 H15 H 0 1 N N N 178.659 24.409 48.354 -4.244 -0.984 -1.135 H15 VP7 40 VP7 H16 H16 H 0 1 N N N 174.050 20.677 48.848 -5.051 1.909 1.520 H16 VP7 41 VP7 H17 H17 H 0 1 N N N 176.300 17.572 45.390 -1.520 3.938 -1.852 H17 VP7 42 VP7 H18 H18 H 0 1 N N N 175.236 17.003 46.490 -2.826 4.782 -1.215 H18 VP7 43 VP7 H19 H19 H 0 1 N N N 180.827 23.240 47.787 -1.864 -3.780 -0.691 H19 VP7 44 VP7 H20 H20 H 0 1 N N N 183.418 15.517 43.724 7.219 0.738 1.568 H20 VP7 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VP7 C13 C12 SING N N 1 VP7 O1 C12 SING N N 2 VP7 C12 C14 SING N N 3 VP7 C12 C11 SING N N 4 VP7 C11 C10 TRIP N N 5 VP7 C10 C9 SING N N 6 VP7 C9 C15 DOUB Y N 7 VP7 C9 C8 SING Y N 8 VP7 C15 C16 SING Y N 9 VP7 C8 C7 DOUB Y N 10 VP7 N2 C4 SING N N 11 VP7 C16 C17 DOUB Y N 12 VP7 C7 C17 SING Y N 13 VP7 C7 C6 SING Y N 14 VP7 N3 C4 DOUB Y N 15 VP7 N3 C5 SING Y N 16 VP7 C4 N1 SING Y N 17 VP7 C17 N4 SING Y N 18 VP7 C6 C5 SING N N 19 VP7 C6 C18 DOUB Y N 20 VP7 C5 C2 DOUB Y N 21 VP7 N1 C3 DOUB Y N 22 VP7 N4 C18 SING Y N 23 VP7 C18 C19 SING N N 24 VP7 C3 C2 SING Y N 25 VP7 C2 C1 SING N N 26 VP7 C20 C19 SING N N 27 VP7 C20 C1 SING N N 28 VP7 C8 H1 SING N N 29 VP7 C13 H2 SING N N 30 VP7 C13 H3 SING N N 31 VP7 C13 H4 SING N N 32 VP7 C15 H5 SING N N 33 VP7 C20 H6 SING N N 34 VP7 C20 H7 SING N N 35 VP7 C1 H8 SING N N 36 VP7 C1 H9 SING N N 37 VP7 C14 H10 SING N N 38 VP7 C14 H11 SING N N 39 VP7 C14 H12 SING N N 40 VP7 C16 H13 SING N N 41 VP7 C19 H14 SING N N 42 VP7 C19 H15 SING N N 43 VP7 C3 H16 SING N N 44 VP7 N2 H17 SING N N 45 VP7 N2 H18 SING N N 46 VP7 N4 H19 SING N N 47 VP7 O1 H20 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VP7 SMILES ACDLabs 12.01 "n1cc2c(nc1N)c3c(CCC2)nc4c3cc(C#CC(C)(C)O)cc4" VP7 InChI InChI 1.03 "InChI=1S/C20H20N4O/c1-20(2,25)9-8-12-6-7-15-14(10-12)17-16(23-15)5-3-4-13-11-22-19(21)24-18(13)17/h6-7,10-11,23,25H,3-5H2,1-2H3,(H2,21,22,24)" VP7 InChIKey InChI 1.03 DGLFSNZWRYADFC-UHFFFAOYSA-N VP7 SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)C#Cc1ccc2[nH]c3CCCc4cnc(N)nc4c3c2c1" VP7 SMILES CACTVS 3.385 "CC(C)(O)C#Cc1ccc2[nH]c3CCCc4cnc(N)nc4c3c2c1" VP7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C#Cc1ccc2c(c1)c-3c([nH]2)CCCc4c3nc(nc4)N)O" VP7 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C#Cc1ccc2c(c1)c-3c([nH]2)CCCc4c3nc(nc4)N)O" # _pdbx_chem_comp_identifier.comp_id VP7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VP7 "Create component" 2020-08-31 RCSB VP7 "Initial release" 2021-05-19 RCSB ##