data_VSC # _chem_comp.id VSC _chem_comp.name "N-[N'-BENZYLOXYCARBONYL-PHENYLALANINYL]-3-AMINO-5-PHENYL-PENTANE-1-SULFONIC ACID PHENYL ESTER" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H36 N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms WRR-204 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-05-03 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 600.724 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VSC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EWO _chem_comp.pdbx_subcomponent_list "PHQ PHE 2PS" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VSC C22 C22 C 0 1 N N N 3.149 4.066 -11.804 -3.531 -0.481 0.307 C1 PHQ 1 VSC O23 O23 O 0 1 N N N 3.574 4.614 -12.826 -3.676 -0.620 1.505 O1 PHQ 2 VSC O24 O24 O 0 1 N N N 2.257 3.062 -11.811 -4.600 -0.526 -0.510 O2 PHQ 3 VSC C25 C25 C 0 1 N N N 1.781 2.566 -13.063 -5.895 -0.743 0.109 C2 PHQ 4 VSC C26 C26 C 0 1 Y N N 1.201 1.184 -12.902 -6.963 -0.763 -0.953 C3 PHQ 5 VSC C31 C31 C 0 1 Y N N 0.017 0.983 -12.169 -7.590 0.412 -1.325 C4 PHQ 6 VSC C30 C30 C 0 1 Y N N -0.406 -0.320 -11.852 -8.571 0.394 -2.299 C5 PHQ 7 VSC C29 C29 C 0 1 Y N N 0.344 -1.432 -12.266 -8.924 -0.799 -2.902 C6 PHQ 8 VSC C28 C28 C 0 1 Y N N 1.517 -1.236 -13.009 -8.297 -1.974 -2.531 C7 PHQ 9 VSC C27 C27 C 0 1 Y N N 1.945 0.066 -13.329 -7.312 -1.954 -1.561 C8 PHQ 10 VSC N21 N21 N 0 1 N N N 3.608 4.356 -10.554 -2.300 -0.278 -0.203 N PHE 11 VSC C13 C13 C 0 1 N N S 4.690 5.348 -10.348 -1.137 -0.229 0.686 CA PHE 12 VSC C11 C11 C 0 1 N N N 5.985 4.775 -10.834 -0.043 0.581 0.039 C PHE 13 VSC O12 O12 O 0 1 N N N 6.358 3.626 -10.567 -0.218 1.069 -1.057 O PHE 14 VSC C14 C14 C 0 1 N N N 4.829 5.649 -8.843 -0.634 -1.650 0.946 CB PHE 15 VSC C15 C15 C 0 1 Y N N 3.524 6.065 -8.203 -1.683 -2.424 1.702 CG PHE 16 VSC C16 C16 C 0 1 Y N N 2.554 6.824 -8.875 -2.645 -3.139 1.014 CD1 PHE 17 VSC C20 C20 C 0 1 Y N N 3.216 5.517 -6.950 -1.678 -2.424 3.085 CD2 PHE 18 VSC C17 C17 C 0 1 Y N N 1.281 7.008 -8.310 -3.607 -3.848 1.708 CE1 PHE 19 VSC C19 C19 C 0 1 Y N N 1.949 5.693 -6.386 -2.640 -3.134 3.779 CE2 PHE 20 VSC C18 C18 C 0 1 Y N N 0.978 6.441 -7.068 -3.606 -3.844 3.091 CZ PHE 21 VSC C1 C1 C 0 1 N N N 8.504 5.750 -13.211 1.970 3.034 0.344 C1 2PS 22 VSC C9 C9 C 0 1 N N S 8.231 5.361 -11.753 2.192 1.549 0.049 C9 2PS 23 VSC C32 C32 C 0 1 N N N 9.165 6.042 -10.743 3.548 1.116 0.610 C32 2PS 24 VSC C33 C33 C 0 1 N N N 10.605 6.270 -11.265 3.826 -0.334 0.208 C33 2PS 25 VSC S34 S34 S 0 1 N N N 11.088 8.006 -11.342 5.433 -0.849 0.873 S34 2PS 26 VSC O37 O37 O 0 1 N N N 11.346 8.254 -12.748 6.488 -0.153 0.222 O37 2PS 27 VSC O36 O36 O 0 1 N N N 9.928 8.712 -10.802 5.381 -0.939 2.290 O36 2PS 28 VSC O35 O35 O 0 1 N N N 12.256 8.096 -10.446 5.592 -2.290 0.411 O35 2PS 29 VSC N10 N10 N 0 1 N N N 6.836 5.667 -11.407 1.129 0.762 0.678 N10 2PS 30 VSC C2 C2 C 0 1 N N N 7.593 4.927 -14.139 0.674 3.498 -0.324 C2 2PS 31 VSC C3 C3 C 0 1 Y N N 7.921 5.172 -15.576 0.455 4.961 -0.034 C3 2PS 32 VSC C4 C4 C 0 1 Y N N 7.236 6.166 -16.298 0.966 5.919 -0.889 C4 2PS 33 VSC C5 C5 C 0 1 Y N N 7.647 6.505 -17.599 0.766 7.261 -0.623 C5 2PS 34 VSC C6 C6 C 0 1 Y N N 8.743 5.844 -18.180 0.053 7.644 0.498 C6 2PS 35 VSC C7 C7 C 0 1 Y N N 9.423 4.841 -17.463 -0.459 6.685 1.353 C7 2PS 36 VSC C8 C8 C 0 1 Y N N 9.011 4.508 -16.164 -0.262 5.344 1.084 C8 2PS 37 VSC C36 C36 C 0 1 Y N N ? ? ? 5.901 -2.417 -0.906 C36 2PS 38 VSC C37 C37 C 0 1 Y N N ? ? ? 7.228 -2.440 -1.310 C37 2PS 39 VSC C38 C38 C 0 1 Y N N ? ? ? 7.540 -2.569 -2.649 C38 2PS 40 VSC C39 C39 C 0 1 Y N N ? ? ? 6.530 -2.675 -3.588 C39 2PS 41 VSC C40 C40 C 0 1 Y N N ? ? ? 5.207 -2.652 -3.188 C40 2PS 42 VSC C41 C41 C 0 1 Y N N ? ? ? 4.890 -2.530 -1.849 C41 2PS 43 VSC H251 H251 H 0 0 N N N 1.001 3.241 -13.444 -5.890 -1.697 0.637 H21 PHQ 44 VSC H252 H252 H 0 0 N N N 2.619 2.524 -13.775 -6.099 0.062 0.815 H22 PHQ 45 VSC H311 H311 H 0 0 N N N -0.569 1.832 -11.849 -7.314 1.344 -0.854 H41 PHQ 46 VSC H301 H301 H 0 0 N N N -1.314 -0.466 -11.286 -9.061 1.311 -2.590 H51 PHQ 47 VSC H291 H291 H 0 0 N N N 0.020 -2.431 -12.014 -9.690 -0.813 -3.663 H61 PHQ 48 VSC H281 H281 H 0 0 N N N 2.094 -2.088 -13.337 -8.573 -2.905 -3.001 H71 PHQ 49 VSC H271 H271 H 0 0 N N N 2.848 0.209 -13.904 -6.819 -2.872 -1.273 H81 PHQ 50 VSC H21 H21 H 0 1 N N N 3.209 3.892 -9.763 -2.185 -0.163 -1.160 H PHE 51 VSC H131 H131 H 0 0 N N N 4.448 6.269 -10.899 -1.421 0.234 1.631 HA PHE 52 VSC H141 H141 H 0 0 N N N 5.187 4.739 -8.340 -0.434 -2.144 -0.005 HB2 PHE 53 VSC H142 H142 H 0 0 N N N 5.552 6.469 -8.719 0.283 -1.610 1.534 HB3 PHE 54 VSC H161 H161 H 0 0 N N N 2.787 7.269 -9.831 -2.646 -3.142 -0.066 HD1 PHE 55 VSC H201 H201 H 0 0 N N N 3.965 4.953 -6.415 -0.924 -1.869 3.622 HD2 PHE 56 VSC H171 H171 H 0 0 N N N 0.536 7.588 -8.835 -4.360 -4.406 1.171 HE1 PHE 57 VSC H191 H191 H 0 0 N N N 1.718 5.254 -5.427 -2.636 -3.134 4.859 HE2 PHE 58 VSC H181 H181 H 0 0 N N N -0.002 6.579 -6.635 -4.358 -4.398 3.633 HZ PHE 59 VSC H11 H11 H 0 1 N N N 8.298 6.821 -13.350 1.898 3.184 1.421 H11 2PS 60 VSC H12 H12 H 0 1 N N N 9.557 5.545 -13.454 2.807 3.612 -0.048 H12 2PS 61 VSC H91 H91 H 0 1 N N N 8.425 4.280 -11.685 2.176 1.386 -1.028 H91 2PS 62 VSC H321 H321 H 0 0 N N N 8.736 7.024 -10.493 4.330 1.760 0.209 H321 2PS 63 VSC H322 H322 H 0 0 N N N 9.225 5.400 -9.851 3.534 1.195 1.697 H322 2PS 64 VSC H331 H331 H 0 0 N N N 11.299 5.753 -10.586 3.044 -0.979 0.609 H331 2PS 65 VSC H332 H332 H 0 0 N N N 10.669 5.854 -12.281 3.841 -0.414 -0.879 H332 2PS 66 VSC H10 H10 H 0 1 N N N 6.493 6.585 -11.605 1.269 0.371 1.555 H10 2PS 67 VSC H21A H21A H 0 0 N N N 7.733 3.858 -13.919 0.746 3.348 -1.401 H21A 2PS 68 VSC H22 H22 H 0 1 N N N 6.547 5.215 -13.958 -0.163 2.921 0.068 H22 2PS 69 VSC H41 H41 H 0 1 N N N 6.392 6.670 -15.852 1.523 5.620 -1.764 H41 2PS 70 VSC H51 H51 H 0 1 N N N 7.122 7.271 -18.150 1.166 8.009 -1.290 H51 2PS 71 VSC H61 H61 H 0 1 N N N 9.064 6.106 -19.177 -0.104 8.692 0.707 H61 2PS 72 VSC H71 H71 H 0 1 N N N 10.261 4.329 -17.913 -1.016 6.985 2.228 H71 2PS 73 VSC H81 H81 H 0 1 N N N 9.533 3.739 -15.614 -0.666 4.595 1.750 H81 2PS 74 VSC H371 H371 H 0 0 N N N ? ? ? 8.017 -2.356 -0.577 H371 2PS 75 VSC H381 H381 H 0 0 N N N ? ? ? 8.573 -2.586 -2.964 H381 2PS 76 VSC H391 H391 H 0 0 N N N ? ? ? 6.776 -2.776 -4.635 H391 2PS 77 VSC H401 H401 H 0 0 N N N ? ? ? 4.420 -2.735 -3.924 H401 2PS 78 VSC H411 H411 H 0 0 N N N ? ? ? 3.856 -2.517 -1.538 H411 2PS 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VSC C1 C9 SING N N 1 VSC C1 C2 SING N N 2 VSC C1 H11 SING N N 3 VSC C1 H12 SING N N 4 VSC C9 C32 SING N N 5 VSC C9 N10 SING N N 6 VSC C9 H91 SING N N 7 VSC C32 C33 SING N N 8 VSC C32 H321 SING N N 9 VSC C32 H322 SING N N 10 VSC C33 S34 SING N N 11 VSC C33 H331 SING N N 12 VSC C33 H332 SING N N 13 VSC S34 O37 DOUB N N 14 VSC S34 O36 DOUB N N 15 VSC S34 O35 SING N N 16 VSC O35 C36 SING N N 17 VSC N10 C11 SING N N 18 VSC N10 H10 SING N N 19 VSC C11 O12 DOUB N N 20 VSC C11 C13 SING N N 21 VSC C13 N21 SING N N 22 VSC C13 C14 SING N N 23 VSC C13 H131 SING N N 24 VSC N21 C22 SING N N 25 VSC N21 H21 SING N N 26 VSC C22 O24 SING N N 27 VSC C22 O23 DOUB N N 28 VSC O24 C25 SING N N 29 VSC C25 C26 SING N N 30 VSC C25 H251 SING N N 31 VSC C25 H252 SING N N 32 VSC C26 C27 DOUB Y N 33 VSC C26 C31 SING Y N 34 VSC C27 C28 SING Y N 35 VSC C27 H271 SING N N 36 VSC C28 C29 DOUB Y N 37 VSC C28 H281 SING N N 38 VSC C29 C30 SING Y N 39 VSC C29 H291 SING N N 40 VSC C30 C31 DOUB Y N 41 VSC C30 H301 SING N N 42 VSC C31 H311 SING N N 43 VSC C14 C15 SING N N 44 VSC C14 H141 SING N N 45 VSC C14 H142 SING N N 46 VSC C15 C16 DOUB Y N 47 VSC C15 C20 SING Y N 48 VSC C16 C17 SING Y N 49 VSC C16 H161 SING N N 50 VSC C17 C18 DOUB Y N 51 VSC C17 H171 SING N N 52 VSC C18 C19 SING Y N 53 VSC C18 H181 SING N N 54 VSC C19 C20 DOUB Y N 55 VSC C19 H191 SING N N 56 VSC C20 H201 SING N N 57 VSC C2 C3 SING N N 58 VSC C2 H21A SING N N 59 VSC C2 H22 SING N N 60 VSC C3 C4 DOUB Y N 61 VSC C3 C8 SING Y N 62 VSC C4 C5 SING Y N 63 VSC C4 H41 SING N N 64 VSC C5 C6 DOUB Y N 65 VSC C5 H51 SING N N 66 VSC C6 C7 SING Y N 67 VSC C6 H61 SING N N 68 VSC C7 C8 DOUB Y N 69 VSC C7 H71 SING N N 70 VSC C8 H81 SING N N 71 VSC C36 C37 DOUB Y N 72 VSC C36 C41 SING Y N 73 VSC C37 C38 SING Y N 74 VSC C37 H371 SING N N 75 VSC C38 C39 DOUB Y N 76 VSC C38 H381 SING N N 77 VSC C39 C40 SING Y N 78 VSC C39 H391 SING N N 79 VSC C40 C41 DOUB Y N 80 VSC C40 H401 SING N N 81 VSC C41 H411 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VSC SMILES ACDLabs 12.01 "O=S(=O)(Oc1ccccc1)CCC(NC(=O)C(NC(=O)OCc2ccccc2)Cc3ccccc3)CCc4ccccc4" VSC SMILES_CANONICAL CACTVS 3.370 "O=C(N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCc2ccccc2)CC[S](=O)(=O)Oc3ccccc3)OCc4ccccc4" VSC SMILES CACTVS 3.370 "O=C(N[CH](Cc1ccccc1)C(=O)N[CH](CCc2ccccc2)CC[S](=O)(=O)Oc3ccccc3)OCc4ccccc4" VSC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CC[C@@H](CCS(=O)(=O)Oc2ccccc2)NC(=O)[C@H](Cc3ccccc3)NC(=O)OCc4ccccc4" VSC SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CCC(CCS(=O)(=O)Oc2ccccc2)NC(=O)C(Cc3ccccc3)NC(=O)OCc4ccccc4" VSC InChI InChI 1.03 "InChI=1S/C34H36N2O6S/c37-33(32(25-28-15-7-2-8-16-28)36-34(38)41-26-29-17-9-3-10-18-29)35-30(22-21-27-13-5-1-6-14-27)23-24-43(39,40)42-31-19-11-4-12-20-31/h1-20,30,32H,21-26H2,(H,35,37)(H,36,38)/t30-,32-/m0/s1" VSC InChIKey InChI 1.03 SUGQHICXCRBQOI-CDZUIXILSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VSC "SYSTEMATIC NAME" ACDLabs 12.01 "phenyl (3S)-3-({N-[(benzyloxy)carbonyl]-L-phenylalanyl}amino)-5-phenylpentane-1-sulfonate" VSC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "phenyl (3S)-5-phenyl-3-[[(2S)-3-phenyl-2-(phenylmethoxycarbonylamino)propanoyl]amino]pentane-1-sulfonate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VSC "Create component" 2000-05-03 RCSB VSC "Modify subcomponent list" 2011-03-23 RCSB VSC "Modify aromatic_flag" 2011-06-04 RCSB VSC "Modify descriptor" 2011-06-04 RCSB VSC "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VSC _pdbx_chem_comp_synonyms.name WRR-204 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##