data_VTX # _chem_comp.id VTX _chem_comp.name Vortioxetine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[2-(2,4-dimethylphenyl)sulfanylphenyl]piperazine; 1-(2-((2,4-Dimethylphenyl)thio)phenyl)piperazine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-27 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.446 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VTX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AW2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VTX C01 C1 C 0 1 N N N N N N 104.008 149.461 155.324 6.285 -0.215 0.087 C01 VTX 1 VTX C02 C2 C 0 1 Y N N N N N 105.423 149.213 155.836 4.792 -0.410 0.133 C02 VTX 2 VTX C03 C3 C 0 1 Y N N N N N 105.641 149.036 157.170 4.173 -0.715 1.331 C03 VTX 3 VTX C04 C4 C 0 1 Y N N N N N 106.935 148.810 157.642 2.804 -0.895 1.377 C04 VTX 4 VTX C05 C5 C 0 1 Y N N N N N 108.022 148.762 156.739 2.049 -0.767 0.218 C05 VTX 5 VTX C07 C6 C 0 1 Y N N N N N 110.019 146.705 157.546 -0.315 0.653 0.201 C07 VTX 6 VTX C08 C7 C 0 1 Y N N N N N 108.990 145.811 157.322 0.562 1.727 0.245 C08 VTX 7 VTX C09 C8 C 0 1 Y N N N N N 109.185 144.472 157.489 0.076 3.019 0.184 C09 VTX 8 VTX C10 C9 C 0 1 Y N N N N N 110.404 143.997 157.878 -1.285 3.246 0.080 C10 VTX 9 VTX C11 C10 C 0 1 Y N N N N N 111.452 144.869 158.107 -2.166 2.182 0.036 C11 VTX 10 VTX C12 C11 C 0 1 Y N N N N N 111.282 146.249 157.947 -1.687 0.882 0.095 C12 VTX 11 VTX C14 C12 C 0 1 N N N N N N 112.414 147.951 159.373 -3.468 -0.194 1.219 C14 VTX 12 VTX C15 C13 C 0 1 N N N N N N 113.609 148.873 159.603 -4.370 -1.429 1.173 C15 VTX 13 VTX C17 C14 C 0 1 N N N N N N 114.822 147.770 157.900 -4.254 -1.424 -1.245 C17 VTX 14 VTX C18 C15 C 0 1 N N N N N N 113.619 146.924 157.499 -3.352 -0.189 -1.199 C18 VTX 15 VTX C19 C16 C 0 1 Y N N N N N 107.741 148.951 155.380 2.675 -0.460 -0.985 C19 VTX 16 VTX C20 C17 C 0 1 N N N N N N 108.875 148.911 154.362 1.860 -0.321 -2.245 C20 VTX 17 VTX C21 C18 C 0 1 Y N N N N N 106.456 149.173 154.966 4.043 -0.277 -1.022 C21 VTX 18 VTX N13 N1 N 0 1 N N N N N N 112.388 147.159 158.183 -2.578 -0.197 0.050 N13 VTX 19 VTX N16 N2 N 0 1 N N N N N N 114.349 149.082 158.353 -5.145 -1.421 -0.076 N16 VTX 20 VTX S06 S1 S 0 1 N N N N N N 109.719 148.477 157.309 0.303 -0.996 0.271 S06 VTX 21 VTX H1 H1 H 0 1 N N N N N N 103.530 148.499 155.086 6.770 -1.170 -0.116 H1 VTX 22 VTX H2 H2 H 0 1 N N N N N N 103.424 149.980 156.098 6.535 0.494 -0.703 H2 VTX 23 VTX H3 H3 H 0 1 N N N N N N 104.050 150.083 154.418 6.631 0.172 1.045 H3 VTX 24 VTX H4 H4 H 0 1 N N N N N N 104.812 149.071 157.862 4.760 -0.814 2.232 H4 VTX 25 VTX H5 H5 H 0 1 N N N N N N 107.106 148.671 158.699 2.322 -1.134 2.313 H5 VTX 26 VTX H6 H6 H 0 1 N N N N N N 108.022 146.176 157.012 1.625 1.553 0.327 H6 VTX 27 VTX H7 H7 H 0 1 N N N N N N 108.371 143.784 157.313 0.760 3.854 0.218 H7 VTX 28 VTX H8 H8 H 0 1 N N N N N N 110.551 142.935 158.008 -1.659 4.258 0.033 H8 VTX 29 VTX H9 H9 H 0 1 N N N N N N 112.412 144.481 158.413 -3.228 2.363 -0.045 H9 VTX 30 VTX H10 H10 H 0 1 N N N N N N 111.513 148.582 159.364 -4.083 0.706 1.205 H10 VTX 31 VTX H11 H11 H 0 1 N N N N N N 112.368 147.258 160.226 -2.872 -0.212 2.131 H11 VTX 32 VTX H12 H12 H 0 1 N N N N N N 114.279 148.418 160.348 -3.757 -2.329 1.215 H12 VTX 33 VTX H13 H13 H 0 1 N N N N N N 113.250 149.843 159.977 -5.052 -1.414 2.024 H13 VTX 34 VTX H14 H14 H 0 1 N N N N N N 115.368 147.273 158.715 -4.851 -1.405 -2.157 H14 VTX 35 VTX H15 H15 H 0 1 N N N N N N 115.490 147.896 157.035 -3.639 -2.324 -1.231 H15 VTX 36 VTX H16 H16 H 0 1 N N N N N N 113.438 147.096 156.428 -2.671 -0.204 -2.049 H16 VTX 37 VTX H17 H17 H 0 1 N N N N N N 113.889 145.870 157.661 -3.966 0.711 -1.240 H17 VTX 38 VTX H18 H18 H 0 1 N N N N N N 109.287 149.923 154.231 1.539 0.714 -2.358 H18 VTX 39 VTX H19 H19 H 0 1 N N N N N N 109.666 148.237 154.721 2.467 -0.609 -3.104 H19 VTX 40 VTX H20 H20 H 0 1 N N N N N N 108.490 148.544 153.399 0.985 -0.968 -2.186 H20 VTX 41 VTX H21 H21 H 0 1 N N N N N N 106.262 149.320 153.914 4.529 -0.038 -1.956 H21 VTX 42 VTX H22 H22 H 0 1 N N N N N N 115.127 149.689 158.514 -5.776 -0.635 -0.105 H22 VTX 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VTX C20 C19 SING N N 1 VTX C21 C19 DOUB Y N 2 VTX C21 C02 SING Y N 3 VTX C01 C02 SING N N 4 VTX C19 C05 SING Y N 5 VTX C02 C03 DOUB Y N 6 VTX C05 S06 SING N N 7 VTX C05 C04 DOUB Y N 8 VTX C03 C04 SING Y N 9 VTX S06 C07 SING N N 10 VTX C08 C09 DOUB Y N 11 VTX C08 C07 SING Y N 12 VTX C09 C10 SING Y N 13 VTX C18 C17 SING N N 14 VTX C18 N13 SING N N 15 VTX C07 C12 DOUB Y N 16 VTX C10 C11 DOUB Y N 17 VTX C17 N16 SING N N 18 VTX C12 C11 SING Y N 19 VTX C12 N13 SING N N 20 VTX N13 C14 SING N N 21 VTX N16 C15 SING N N 22 VTX C14 C15 SING N N 23 VTX C01 H1 SING N N 24 VTX C01 H2 SING N N 25 VTX C01 H3 SING N N 26 VTX C03 H4 SING N N 27 VTX C04 H5 SING N N 28 VTX C08 H6 SING N N 29 VTX C09 H7 SING N N 30 VTX C10 H8 SING N N 31 VTX C11 H9 SING N N 32 VTX C14 H10 SING N N 33 VTX C14 H11 SING N N 34 VTX C15 H12 SING N N 35 VTX C15 H13 SING N N 36 VTX C17 H14 SING N N 37 VTX C17 H15 SING N N 38 VTX C18 H16 SING N N 39 VTX C18 H17 SING N N 40 VTX C20 H18 SING N N 41 VTX C20 H19 SING N N 42 VTX C20 H20 SING N N 43 VTX C21 H21 SING N N 44 VTX N16 H22 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VTX InChI InChI 1.06 "InChI=1S/C18H22N2S/c1-14-7-8-17(15(2)13-14)21-18-6-4-3-5-16(18)20-11-9-19-10-12-20/h3-8,13,19H,9-12H2,1-2H3" VTX InChIKey InChI 1.06 YQNWZWMKLDQSAC-UHFFFAOYSA-N VTX SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(Sc2ccccc2N3CCNCC3)c(C)c1" VTX SMILES CACTVS 3.385 "Cc1ccc(Sc2ccccc2N3CCNCC3)c(C)c1" VTX SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)C)Sc2ccccc2N3CCNCC3" VTX SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(c(c1)C)Sc2ccccc2N3CCNCC3" # _pdbx_chem_comp_identifier.comp_id VTX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "1-[2-(2,4-dimethylphenyl)sulfanylphenyl]piperazine" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VTX "1-[2-(2,4-dimethylphenyl)sulfanylphenyl]piperazine" PDB ? 2 VTX "1-(2-((2,4-Dimethylphenyl)thio)phenyl)piperazine" PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VTX "Create component" 2022-09-02 PDBE VTX "Initial release" 2024-03-06 RCSB #