data_W39 # _chem_comp.id W39 _chem_comp.name "(6M)-3-amino-N-[3-(4-amino-4-methylpiperidin-1-yl)pyridin-2-yl]-6-[3-(trifluoromethyl)pyridin-2-yl]pyrazine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H23 F3 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-22 _chem_comp.pdbx_modified_date 2024-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 472.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W39 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UAK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W39 C1 C1 C 0 1 Y N N N N N 29.163 -2.615 10.521 -4.704 2.851 -0.127 C1 W39 1 W39 C2 C2 C 0 1 Y N N N N N 28.689 -3.908 10.792 -4.427 1.491 -0.118 C2 W39 2 W39 C3 C3 C 0 1 Y N N N N N 29.436 -4.785 11.611 -3.097 1.087 -0.102 C3 W39 3 W39 O1 O1 O 0 1 N N N N N N 32.293 -3.862 14.541 -0.074 3.785 -0.080 O1 W39 4 W39 C11 C4 C 0 1 Y N N N N N 32.899 -9.795 13.612 3.595 -0.888 -0.265 C11 W39 5 W39 C12 C5 C 0 1 Y N N N N N 32.511 -9.968 12.253 2.681 -1.865 0.124 C12 W39 6 W39 C13 C6 C 0 1 N N N N N N 32.380 -8.823 11.253 1.329 -1.475 0.663 C13 W39 7 W39 C14 C7 C 0 1 Y N N N N N 32.240 -11.273 11.798 3.033 -3.199 0.007 C14 W39 8 W39 C15 C8 C 0 1 Y N N N N N 32.352 -12.359 12.680 4.288 -3.512 -0.494 C15 W39 9 W39 C16 C9 C 0 1 Y N N N N N 32.740 -12.101 13.998 5.146 -2.490 -0.861 C16 W39 10 W39 C17 C10 C 0 1 N N N N N N 28.499 -6.772 10.675 -3.211 -0.931 -1.328 C17 W39 11 W39 C18 C11 C 0 1 N N N N N N 28.244 -8.264 10.928 -2.709 -2.376 -1.347 C18 W39 12 W39 C19 C12 C 0 1 N N N N N N 27.292 -8.482 12.113 -3.260 -3.118 -0.126 C19 W39 13 W39 C20 C13 C 0 1 N N N N N N 27.806 -7.696 13.336 -2.825 -2.386 1.146 C20 W39 14 W39 C21 C14 C 0 1 N N N N N N 28.055 -6.213 13.022 -3.324 -0.940 1.093 C21 W39 15 W39 C22 C15 C 0 1 N N N N N N 25.835 -8.162 11.738 -4.788 -3.156 -0.197 C22 W39 16 W39 C10 C16 C 0 1 Y N N N N N 33.861 -6.169 15.541 2.648 3.161 0.074 C10 W39 17 W39 C4 C17 C 0 1 Y N N N N N 30.662 -4.295 12.136 -2.095 2.059 -0.095 C4 W39 18 W39 C5 C18 C 0 1 Y N N N N N 30.388 -2.231 11.077 -3.660 3.754 -0.119 C5 W39 19 W39 C6 C19 C 0 1 N N N N N N 32.170 -4.961 13.998 0.217 2.605 -0.072 C6 W39 20 W39 C7 C20 C 0 1 Y N N N N N 32.884 -6.202 14.499 1.636 2.194 -0.055 C7 W39 21 W39 C8 C21 C 0 1 Y N N N N N 33.237 -8.509 14.285 3.234 0.546 -0.146 C8 W39 22 W39 C9 C22 C 0 1 Y N N N N N 34.183 -8.443 15.335 4.238 1.510 -0.018 C9 W39 23 W39 F1 F1 F 0 1 N N N N N N 33.376 -7.963 11.426 0.603 -2.629 0.979 F1 W39 24 W39 F2 F2 F 0 1 N N N N N N 32.425 -9.294 10.002 1.492 -0.697 1.813 F2 W39 25 W39 F3 F3 F 0 1 N N N N N N 31.244 -8.151 11.411 0.636 -0.739 -0.304 F3 W39 26 W39 N1 N1 N 0 1 Y N N N N N 31.114 -3.052 11.857 -2.406 3.344 -0.104 N1 W39 27 W39 N2 N2 N 0 1 N N N N N N 31.412 -5.180 12.921 -0.755 1.671 -0.079 N2 W39 28 W39 N3 N3 N 0 1 Y N N N N N 32.598 -7.382 13.882 1.959 0.910 -0.162 N3 W39 29 W39 N4 N4 N 0 1 Y N N N N N 34.496 -7.284 15.960 3.923 2.786 0.088 N4 W39 30 W39 N5 N5 N 0 1 N N N N N N 34.235 -5.021 16.228 2.319 4.499 0.179 N5 W39 31 W39 N6 N6 N 0 1 Y N N N N N 33.006 -10.860 14.446 4.788 -1.229 -0.735 N6 W39 32 W39 N7 N7 N 0 1 N N N N N N 28.943 -6.078 11.878 -2.769 -0.273 -0.092 N7 W39 33 W39 N8 N8 N 0 1 N N N N N N 27.325 -9.887 12.452 -2.734 -4.490 -0.107 N8 W39 34 W39 H1 H1 H 0 1 N N N N N N 28.598 -1.935 9.900 -5.726 3.198 -0.144 H1 W39 35 W39 H2 H2 H 0 1 N N N N N N 27.749 -4.234 10.373 -5.226 0.764 -0.123 H2 W39 36 W39 H14 H3 H 0 1 N N N N N N 31.946 -11.438 10.772 2.346 -3.979 0.301 H14 W39 37 W39 H15 H4 H 0 1 N N N N N N 32.144 -13.366 12.350 4.593 -4.543 -0.597 H15 W39 38 W39 H16 H5 H 0 1 N N N N N N 32.830 -12.930 14.684 6.124 -2.730 -1.251 H16 W39 39 W39 H172 H6 H 0 0 N N N N N N 27.566 -6.308 10.322 -2.809 -0.395 -2.188 H172 W39 40 W39 H171 H7 H 0 0 N N N N N N 29.274 -6.671 9.901 -4.300 -0.924 -1.373 H171 W39 41 W39 H182 H8 H 0 0 N N N N N N 27.798 -8.708 10.026 -3.051 -2.868 -2.257 H182 W39 42 W39 H181 H9 H 0 0 N N N N N N 29.203 -8.758 11.145 -1.619 -2.383 -1.316 H181 W39 43 W39 H202 H10 H 0 0 N N N N N N 27.058 -7.765 14.139 -3.250 -2.885 2.017 H202 W39 44 W39 H201 H11 H 0 0 N N N N N N 28.750 -8.148 13.674 -1.737 -2.393 1.217 H201 W39 45 W39 H211 H12 H 0 0 N N N N N N 28.515 -5.730 13.897 -4.412 -0.934 1.036 H211 W39 46 W39 H212 H13 H 0 0 N N N N N N 27.096 -5.725 12.796 -3.003 -0.412 1.991 H212 W39 47 W39 H221 H14 H 0 0 N N N N N N 25.186 -8.330 12.610 -5.096 -3.673 -1.106 H221 W39 48 W39 H223 H15 H 0 0 N N N N N N 25.760 -7.111 11.422 -5.179 -3.685 0.672 H223 W39 49 W39 H222 H16 H 0 0 N N N N N N 25.517 -8.816 10.913 -5.176 -2.138 -0.208 H222 W39 50 W39 H5 H17 H 0 1 N N N N N N 30.764 -1.240 10.873 -3.873 4.813 -0.126 H5 W39 51 W39 H9 H18 H 0 1 N N N N N N 34.674 -9.352 15.650 5.275 1.209 -0.006 H9 W39 52 W39 H3 H19 H 0 1 N N N N N N 31.373 -6.135 12.626 -0.523 0.729 -0.072 H3 W39 53 W39 HN51 H20 H 0 0 N N N N N N 34.921 -5.253 16.918 1.395 4.779 0.087 HN51 W39 54 W39 HN52 H21 H 0 0 N N N N N N 34.620 -4.359 15.585 3.011 5.157 0.345 HN52 W39 55 W39 H4 H22 H 0 1 N N N N N N 26.712 -10.059 13.223 -3.084 -5.000 0.690 H4 W39 56 W39 HN81 H23 H 0 0 N N N N N N 27.029 -10.427 11.664 -2.949 -4.972 -0.967 HN81 W39 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W39 C1 C2 DOUB Y N 1 W39 C1 C5 SING Y N 2 W39 C2 C3 SING Y N 3 W39 C3 C4 DOUB Y N 4 W39 N7 C3 SING N N 5 W39 N1 C4 SING Y N 6 W39 C4 N2 SING N N 7 W39 C5 N1 DOUB Y N 8 W39 N2 C6 SING N N 9 W39 C7 C6 SING N N 10 W39 C6 O1 DOUB N N 11 W39 C7 N3 DOUB Y N 12 W39 C10 C7 SING Y N 13 W39 N3 C8 SING Y N 14 W39 C8 C9 DOUB Y N 15 W39 C11 C8 SING N N 16 W39 C9 N4 SING Y N 17 W39 N4 C10 DOUB Y N 18 W39 N5 C10 SING N N 19 W39 C11 C12 DOUB Y N 20 W39 N6 C11 SING Y N 21 W39 C13 C12 SING N N 22 W39 C12 C14 SING Y N 23 W39 F1 C13 SING N N 24 W39 F2 C13 SING N N 25 W39 F3 C13 SING N N 26 W39 C14 C15 DOUB Y N 27 W39 C15 C16 SING Y N 28 W39 C16 N6 DOUB Y N 29 W39 N7 C17 SING N N 30 W39 C21 N7 SING N N 31 W39 C17 C18 SING N N 32 W39 C18 C19 SING N N 33 W39 C19 C20 SING N N 34 W39 N8 C19 SING N N 35 W39 C22 C19 SING N N 36 W39 C20 C21 SING N N 37 W39 C1 H1 SING N N 38 W39 C2 H2 SING N N 39 W39 C14 H14 SING N N 40 W39 C15 H15 SING N N 41 W39 C16 H16 SING N N 42 W39 C17 H172 SING N N 43 W39 C17 H171 SING N N 44 W39 C18 H182 SING N N 45 W39 C18 H181 SING N N 46 W39 C20 H202 SING N N 47 W39 C20 H201 SING N N 48 W39 C21 H211 SING N N 49 W39 C21 H212 SING N N 50 W39 C22 H221 SING N N 51 W39 C22 H223 SING N N 52 W39 C22 H222 SING N N 53 W39 C5 H5 SING N N 54 W39 C9 H9 SING N N 55 W39 N2 H3 SING N N 56 W39 N5 HN51 SING N N 57 W39 N5 HN52 SING N N 58 W39 N8 H4 SING N N 59 W39 N8 HN81 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W39 SMILES ACDLabs 12.01 "FC(F)(F)c1cccnc1c1cnc(N)c(n1)C(=O)Nc1ncccc1N1CCC(C)(N)CC1" W39 InChI InChI 1.06 "InChI=1S/C22H23F3N8O/c1-21(27)6-10-33(11-7-21)15-5-3-9-29-19(15)32-20(34)17-18(26)30-12-14(31-17)16-13(22(23,24)25)4-2-8-28-16/h2-5,8-9,12H,6-7,10-11,27H2,1H3,(H2,26,30)(H,29,32,34)" W39 InChIKey InChI 1.06 XXJXHXJWQSCNPX-UHFFFAOYSA-N W39 SMILES_CANONICAL CACTVS 3.385 "CC1(N)CCN(CC1)c2cccnc2NC(=O)c3nc(cnc3N)c4ncccc4C(F)(F)F" W39 SMILES CACTVS 3.385 "CC1(N)CCN(CC1)c2cccnc2NC(=O)c3nc(cnc3N)c4ncccc4C(F)(F)F" W39 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)c2cccnc2NC(=O)c3c(ncc(n3)c4c(cccn4)C(F)(F)F)N)N" W39 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(CC1)c2cccnc2NC(=O)c3c(ncc(n3)c4c(cccn4)C(F)(F)F)N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W39 "SYSTEMATIC NAME" ACDLabs 12.01 "(6M)-3-amino-N-[3-(4-amino-4-methylpiperidin-1-yl)pyridin-2-yl]-6-[3-(trifluoromethyl)pyridin-2-yl]pyrazine-2-carboxamide" W39 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-azanyl-~{N}-[3-(4-azanyl-4-methyl-piperidin-1-yl)pyridin-2-yl]-6-[3-(trifluoromethyl)pyridin-2-yl]pyrazine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W39 "Create component" 2023-09-22 RCSB W39 "Initial release" 2024-01-24 RCSB #