data_W5Y # _chem_comp.id W5Y _chem_comp.name "5'-O-(L-phenylalanylsulfamoyl)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N7 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2021-05-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.494 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W5Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K98 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W5Y CD1 C1 C 0 1 Y N N -16.120 4.696 -67.004 5.788 1.704 -1.591 CD1 W5Y 1 W5Y CE1 C2 C 0 1 Y N N -17.062 4.362 -67.974 6.336 2.837 -2.164 CE1 W5Y 2 W5Y CZ C3 C 0 1 Y N N -17.003 4.919 -69.258 6.551 3.966 -1.395 CZ W5Y 3 W5Y CE2 C4 C 0 1 Y N N -15.993 5.830 -69.574 6.217 3.962 -0.054 CE2 W5Y 4 W5Y CD2 C5 C 0 1 Y N N -15.049 6.169 -68.603 5.669 2.830 0.519 CD2 W5Y 5 W5Y CG C6 C 0 1 Y N N -15.100 5.608 -67.324 5.449 1.703 -0.250 CG W5Y 6 W5Y CB C7 C 0 1 N N N -14.080 5.984 -66.270 4.851 0.469 0.374 CB W5Y 7 W5Y CA C8 C 0 1 N N S -12.775 5.189 -66.374 3.326 0.529 0.264 CA W5Y 8 W5Y N N1 N 0 1 N N N -12.954 3.798 -66.039 2.821 1.653 1.063 N W5Y 9 W5Y C C9 C 0 1 N N N -11.728 5.742 -65.451 2.734 -0.758 0.776 C W5Y 10 W5Y O O1 O 0 1 N N N -11.362 5.143 -64.450 2.275 -0.810 1.898 O W5Y 11 W5Y NAT N2 N 0 1 N N N -11.200 6.895 -65.821 2.714 -1.852 -0.011 NAT W5Y 12 W5Y SBI S1 S 0 1 N N N -10.235 7.704 -64.831 2.064 -3.266 0.552 SBI W5Y 13 W5Y OAD O2 O 0 1 N N N -8.975 7.057 -64.664 2.161 -4.204 -0.511 OAD W5Y 14 W5Y OAE O3 O 0 1 N N N -10.068 9.014 -65.385 2.631 -3.486 1.837 OAE W5Y 15 W5Y "O5'" O4 O 0 1 N N N -10.869 7.862 -63.413 0.578 -3.022 0.775 "O5'" W5Y 16 W5Y "C5'" C10 C 0 1 N N N -12.175 8.451 -63.294 -0.190 -2.972 -0.429 "C5'" W5Y 17 W5Y "C4'" C11 C 0 1 N N R -12.244 9.367 -62.070 -1.660 -2.723 -0.086 "C4'" W5Y 18 W5Y "O4'" O5 O 0 1 N N N -11.796 8.756 -60.848 -1.815 -1.410 0.477 "O4'" W5Y 19 W5Y "C3'" C12 C 0 1 N N S -11.345 10.580 -62.233 -2.513 -2.774 -1.369 "C3'" W5Y 20 W5Y "O3'" O6 O 0 1 N N N -12.002 11.578 -63.004 -3.496 -3.807 -1.275 "O3'" W5Y 21 W5Y "C2'" C13 C 0 1 N N R -11.142 11.011 -60.798 -3.192 -1.384 -1.429 "C2'" W5Y 22 W5Y "O2'" O7 O 0 1 N N N -12.326 11.695 -60.385 -4.555 -1.500 -1.843 "O2'" W5Y 23 W5Y "C1'" C14 C 0 1 N N R -11.119 9.717 -60.017 -3.100 -0.914 0.045 "C1'" W5Y 24 W5Y N9 N3 N 0 1 Y N N -9.732 9.252 -59.725 -3.143 0.548 0.124 N9 W5Y 25 W5Y C8 C15 C 0 1 Y N N -8.898 8.693 -60.619 -2.070 1.389 0.092 C8 W5Y 26 W5Y N7 N4 N 0 1 Y N N -7.723 8.351 -60.050 -2.471 2.624 0.184 N7 W5Y 27 W5Y C5 C16 C 0 1 Y N N -7.784 8.697 -58.758 -3.822 2.653 0.281 C5 W5Y 28 W5Y C4 C17 C 0 1 Y N N -9.112 9.286 -58.547 -4.269 1.322 0.238 C4 W5Y 29 W5Y N3 N5 N 0 1 Y N N -9.448 9.720 -57.320 -5.574 1.077 0.310 N3 W5Y 30 W5Y C2 C18 C 0 1 Y N N -8.586 9.617 -56.306 -6.437 2.065 0.417 C2 W5Y 31 W5Y N1 N6 N 0 1 Y N N -7.351 9.080 -56.425 -6.064 3.331 0.459 N1 W5Y 32 W5Y C6 C19 C 0 1 Y N N -6.875 8.612 -57.601 -4.781 3.673 0.401 C6 W5Y 33 W5Y N6 N7 N 0 1 N N N -5.626 8.065 -57.702 -4.400 5.003 0.444 N6 W5Y 34 W5Y H1 H1 H 0 1 N N N -16.173 4.259 -66.018 5.621 0.822 -2.191 H1 W5Y 35 W5Y H2 H2 H 0 1 N N N -17.849 3.663 -67.733 6.597 2.839 -3.212 H2 W5Y 36 W5Y H3 H3 H 0 1 N N N -17.737 4.645 -70.002 6.980 4.850 -1.843 H3 W5Y 37 W5Y H4 H4 H 0 1 N N N -15.943 6.268 -70.560 6.386 4.844 0.547 H4 W5Y 38 W5Y H5 H5 H 0 1 N N N -14.268 6.875 -68.844 5.409 2.827 1.567 H5 W5Y 39 W5Y H6 H6 H 0 1 N N N -13.846 7.053 -66.377 5.218 -0.416 -0.146 H6 W5Y 40 W5Y H7 H7 H 0 1 N N N -14.520 5.803 -65.278 5.137 0.418 1.425 H7 W5Y 41 W5Y H8 H8 H 0 1 N N N -12.407 5.269 -67.407 3.043 0.669 -0.780 H8 W5Y 42 W5Y H9 H9 H 0 1 N N N -12.080 3.320 -66.120 1.823 1.754 0.956 H9 W5Y 43 W5Y H10 H10 H 0 1 N N N -13.289 3.722 -65.100 3.071 1.546 2.035 H10 W5Y 44 W5Y H12 H12 H 0 1 N N N -11.404 7.266 -66.727 3.081 -1.810 -0.908 H12 W5Y 45 W5Y H13 H13 H 0 1 N N N -12.390 9.039 -64.198 0.178 -2.164 -1.061 H13 W5Y 46 W5Y H14 H14 H 0 1 N N N -12.924 7.652 -63.190 -0.096 -3.920 -0.959 H14 W5Y 47 W5Y H15 H15 H 0 1 N N N -13.282 9.713 -61.952 -2.008 -3.474 0.623 H15 W5Y 48 W5Y H16 H16 H 0 1 N N N -10.386 10.285 -62.683 -1.879 -2.927 -2.243 H16 W5Y 49 W5Y H17 H17 H 0 1 N N N -11.431 12.332 -63.100 -4.061 -3.885 -2.056 H17 W5Y 50 W5Y H18 H18 H 0 1 N N N -10.221 11.598 -60.663 -2.643 -0.711 -2.087 H18 W5Y 51 W5Y H19 H19 H 0 1 N N N -12.230 11.980 -59.484 -4.666 -1.876 -2.727 H19 W5Y 52 W5Y H20 H20 H 0 1 N N N -11.666 9.855 -59.073 -3.901 -1.355 0.639 H20 W5Y 53 W5Y H21 H21 H 0 1 N N N -9.138 8.537 -61.660 -1.040 1.076 0.004 H21 W5Y 54 W5Y H22 H22 H 0 1 N N N -8.892 9.983 -55.337 -7.490 1.831 0.473 H22 W5Y 55 W5Y H23 H23 H 0 1 N N N -5.181 8.082 -56.807 -3.462 5.240 0.391 H23 W5Y 56 W5Y H24 H24 H 0 1 N N N -5.701 7.119 -58.019 -5.073 5.697 0.527 H24 W5Y 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W5Y CE2 CZ DOUB Y N 1 W5Y CE2 CD2 SING Y N 2 W5Y CZ CE1 SING Y N 3 W5Y CD2 CG DOUB Y N 4 W5Y CE1 CD1 DOUB Y N 5 W5Y CG CD1 SING Y N 6 W5Y CG CB SING N N 7 W5Y CA CB SING N N 8 W5Y CA N SING N N 9 W5Y CA C SING N N 10 W5Y NAT C SING N N 11 W5Y NAT SBI SING N N 12 W5Y C O DOUB N N 13 W5Y OAE SBI DOUB N N 14 W5Y SBI OAD DOUB N N 15 W5Y SBI "O5'" SING N N 16 W5Y "O5'" "C5'" SING N N 17 W5Y "C5'" "C4'" SING N N 18 W5Y "O3'" "C3'" SING N N 19 W5Y "C3'" "C4'" SING N N 20 W5Y "C3'" "C2'" SING N N 21 W5Y "C4'" "O4'" SING N N 22 W5Y "O4'" "C1'" SING N N 23 W5Y "C2'" "O2'" SING N N 24 W5Y "C2'" "C1'" SING N N 25 W5Y C8 N7 DOUB Y N 26 W5Y C8 N9 SING Y N 27 W5Y N7 C5 SING Y N 28 W5Y "C1'" N9 SING N N 29 W5Y N9 C4 SING Y N 30 W5Y C5 C4 DOUB Y N 31 W5Y C5 C6 SING Y N 32 W5Y C4 N3 SING Y N 33 W5Y N6 C6 SING N N 34 W5Y C6 N1 DOUB Y N 35 W5Y N3 C2 DOUB Y N 36 W5Y N1 C2 SING Y N 37 W5Y CD1 H1 SING N N 38 W5Y CE1 H2 SING N N 39 W5Y CZ H3 SING N N 40 W5Y CE2 H4 SING N N 41 W5Y CD2 H5 SING N N 42 W5Y CB H6 SING N N 43 W5Y CB H7 SING N N 44 W5Y CA H8 SING N N 45 W5Y N H9 SING N N 46 W5Y N H10 SING N N 47 W5Y NAT H12 SING N N 48 W5Y "C5'" H13 SING N N 49 W5Y "C5'" H14 SING N N 50 W5Y "C4'" H15 SING N N 51 W5Y "C3'" H16 SING N N 52 W5Y "O3'" H17 SING N N 53 W5Y "C2'" H18 SING N N 54 W5Y "O2'" H19 SING N N 55 W5Y "C1'" H20 SING N N 56 W5Y C8 H21 SING N N 57 W5Y C2 H22 SING N N 58 W5Y N6 H23 SING N N 59 W5Y N6 H24 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W5Y SMILES ACDLabs 12.01 "c1ccccc1CC(N)C(=O)NS(=O)(OCC2OC(C(C2O)O)n3c4c(nc3)c(ncn4)N)=O" W5Y InChI InChI 1.03 "InChI=1S/C19H23N7O7S/c20-11(6-10-4-2-1-3-5-10)18(29)25-34(30,31)32-7-12-14(27)15(28)19(33-12)26-9-24-13-16(21)22-8-23-17(13)26/h1-5,8-9,11-12,14-15,19,27-28H,6-7,20H2,(H,25,29)(H2,21,22,23)/t11-,12+,14+,15+,19+/m0/s1" W5Y InChIKey InChI 1.03 QGOJGCAOMCBQFJ-QTOWJTHWSA-N W5Y SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccccc1)C(=O)N[S](=O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" W5Y SMILES CACTVS 3.385 "N[CH](Cc1ccccc1)C(=O)N[S](=O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" W5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)NS(=O)(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N" W5Y SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NS(=O)(=O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W5Y "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-(L-phenylalanylsulfamoyl)adenosine" W5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-phenyl-propanoyl]sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W5Y "Create component" 2020-09-29 RCSB W5Y "Initial release" 2021-05-12 RCSB ##