data_W6Y # _chem_comp.id W6Y _chem_comp.name "5-[2-(5-carboxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H14 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-14 _chem_comp.pdbx_modified_date 2014-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W6Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3W6Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W6Y OAA OAA O 0 1 N N N 33.509 -14.016 -10.938 -4.992 -2.255 -0.141 OAA W6Y 1 W6Y CAQ CAQ C 0 1 N N N 34.552 -13.628 -10.385 -5.619 -1.214 -0.138 CAQ W6Y 2 W6Y OAE OAE O 0 1 N N N 34.697 -12.428 -10.025 -6.966 -1.238 -0.180 OAE W6Y 3 W6Y CAT CAT C 0 1 Y N N 35.550 -14.565 -10.168 -4.906 0.074 -0.081 CAT W6Y 4 W6Y CAH CAH C 0 1 Y N N 35.141 -15.847 -9.761 -5.593 1.272 -0.238 CAH W6Y 5 W6Y CAG CAG C 0 1 Y N N 36.101 -16.836 -9.513 -4.919 2.484 -0.184 CAG W6Y 6 W6Y CAJ CAJ C 0 1 Y N N 37.459 -16.532 -9.688 -3.575 2.550 0.022 CAJ W6Y 7 W6Y CAY CAY C 0 1 Y N N 37.875 -15.253 -10.114 -2.817 1.379 0.188 CAY W6Y 8 W6Y CAL CAL C 0 1 Y N N 39.240 -14.963 -10.285 -1.428 1.431 0.401 CAL W6Y 9 W6Y CAZ CAZ C 0 1 Y N N 36.924 -14.252 -10.357 -3.464 0.119 0.147 CAZ W6Y 10 W6Y CAK CAK C 0 1 Y N N 37.385 -12.976 -10.764 -2.713 -1.050 0.318 CAK W6Y 11 W6Y CAI CAI C 0 1 Y N N 38.746 -12.698 -10.922 -1.369 -0.963 0.528 CAI W6Y 12 W6Y CAS CAS C 0 1 Y N N 39.676 -13.701 -10.693 -0.728 0.274 0.557 CAS W6Y 13 W6Y CAM CAM C 0 1 N N N 41.009 -13.443 -10.825 0.760 0.333 0.792 CAM W6Y 14 W6Y CAN CAN C 0 1 N N N 41.494 -13.832 -12.240 1.490 0.269 -0.551 CAN W6Y 15 W6Y CAU CAU C 0 1 N N N 40.920 -13.008 -13.219 2.978 0.329 -0.317 CAU W6Y 16 W6Y CAX CAX C 0 1 N N N 41.260 -11.641 -13.249 3.682 1.617 -0.276 CAX W6Y 17 W6Y OAD OAD O 0 1 N N N 42.045 -11.104 -12.460 3.074 2.659 -0.431 OAD W6Y 18 W6Y NAP NAP N 0 1 N N N 40.694 -10.816 -14.207 5.014 1.624 -0.063 NAP W6Y 19 W6Y CAW CAW C 0 1 N N N 39.800 -11.307 -15.132 5.682 0.470 0.108 CAW W6Y 20 W6Y OAC OAC O 0 1 N N N 39.317 -10.535 -15.941 6.884 0.503 0.294 OAC W6Y 21 W6Y NAO NAO N 0 1 N N N 39.448 -12.654 -15.122 5.059 -0.720 0.075 NAO W6Y 22 W6Y CAV CAV C 0 1 N N N 40.011 -13.528 -14.171 3.699 -0.808 -0.132 CAV W6Y 23 W6Y CAR CAR C 0 1 N N N 39.587 -14.874 -14.243 3.032 -2.131 -0.165 CAR W6Y 24 W6Y OAF OAF O 0 1 N N N 38.364 -15.123 -14.319 1.822 -2.199 -0.238 OAF W6Y 25 W6Y OAB OAB O 0 1 N N N 40.393 -15.833 -14.264 3.767 -3.258 -0.115 OAB W6Y 26 W6Y H1 H1 H 0 1 N N N 33.916 -11.934 -10.245 -7.389 -2.107 -0.212 H1 W6Y 27 W6Y H2 H2 H 0 1 N N N 34.091 -16.068 -9.640 -6.660 1.260 -0.403 H2 W6Y 28 W6Y H3 H3 H 0 1 N N N 35.799 -17.822 -9.191 -5.476 3.401 -0.309 H3 W6Y 29 W6Y H4 H4 H 0 1 N N N 38.201 -17.292 -9.493 -3.086 3.513 0.058 H4 W6Y 30 W6Y H5 H5 H 0 1 N N N 39.970 -15.736 -10.096 -0.920 2.383 0.440 H5 W6Y 31 W6Y H6 H6 H 0 1 N N N 36.664 -12.195 -10.958 -3.195 -2.015 0.284 H6 W6Y 32 W6Y H7 H7 H 0 1 N N N 39.070 -11.712 -11.220 -0.790 -1.865 0.660 H7 W6Y 33 W6Y H8 H8 H 0 1 N N N 41.567 -14.026 -10.077 1.011 1.265 1.298 H8 W6Y 34 W6Y H9 H9 H 0 1 N N N 41.189 -12.370 -10.662 1.064 -0.510 1.411 H9 W6Y 35 W6Y H10 H10 H 0 1 N N N 41.213 -14.876 -12.441 1.239 -0.663 -1.057 H10 W6Y 36 W6Y H11 H11 H 0 1 N N N 42.589 -13.732 -12.284 1.186 1.113 -1.171 H11 W6Y 37 W6Y H12 H12 H 0 1 N N N 40.939 -9.847 -14.227 5.493 2.467 -0.033 H12 W6Y 38 W6Y H13 H13 H 0 1 N N N 38.793 -13.003 -15.792 5.575 -1.532 0.202 H13 W6Y 39 W6Y H14 H14 H 0 1 N N N 39.913 -16.649 -14.339 3.287 -4.097 -0.139 H14 W6Y 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W6Y OAC CAW DOUB N N 1 W6Y CAW NAO SING N N 2 W6Y CAW NAP SING N N 3 W6Y NAO CAV SING N N 4 W6Y OAF CAR DOUB N N 5 W6Y OAB CAR SING N N 6 W6Y CAR CAV SING N N 7 W6Y NAP CAX SING N N 8 W6Y CAV CAU DOUB N N 9 W6Y CAX CAU SING N N 10 W6Y CAX OAD DOUB N N 11 W6Y CAU CAN SING N N 12 W6Y CAN CAM SING N N 13 W6Y OAA CAQ DOUB N N 14 W6Y CAI CAK DOUB Y N 15 W6Y CAI CAS SING Y N 16 W6Y CAM CAS SING N N 17 W6Y CAK CAZ SING Y N 18 W6Y CAS CAL DOUB Y N 19 W6Y CAQ CAT SING N N 20 W6Y CAQ OAE SING N N 21 W6Y CAZ CAT DOUB Y N 22 W6Y CAZ CAY SING Y N 23 W6Y CAL CAY SING Y N 24 W6Y CAT CAH SING Y N 25 W6Y CAY CAJ DOUB Y N 26 W6Y CAH CAG DOUB Y N 27 W6Y CAJ CAG SING Y N 28 W6Y OAE H1 SING N N 29 W6Y CAH H2 SING N N 30 W6Y CAG H3 SING N N 31 W6Y CAJ H4 SING N N 32 W6Y CAL H5 SING N N 33 W6Y CAK H6 SING N N 34 W6Y CAI H7 SING N N 35 W6Y CAM H8 SING N N 36 W6Y CAM H9 SING N N 37 W6Y CAN H10 SING N N 38 W6Y CAN H11 SING N N 39 W6Y NAP H12 SING N N 40 W6Y NAO H13 SING N N 41 W6Y OAB H14 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W6Y SMILES ACDLabs 12.01 "O=C1NC(C(=O)O)=C(C(=O)N1)CCc3cc2cccc(C(=O)O)c2cc3" W6Y InChI InChI 1.03 "InChI=1S/C18H14N2O6/c21-15-13(14(17(24)25)19-18(26)20-15)7-5-9-4-6-11-10(8-9)2-1-3-12(11)16(22)23/h1-4,6,8H,5,7H2,(H,22,23)(H,24,25)(H2,19,20,21,26)" W6Y InChIKey InChI 1.03 HZDGWRFIJPFNAF-UHFFFAOYSA-N W6Y SMILES_CANONICAL CACTVS 3.370 "OC(=O)C1=C(CCc2ccc3c(cccc3C(O)=O)c2)C(=O)NC(=O)N1" W6Y SMILES CACTVS 3.370 "OC(=O)C1=C(CCc2ccc3c(cccc3C(O)=O)c2)C(=O)NC(=O)N1" W6Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc2cc(ccc2c(c1)C(=O)O)CCC3=C(NC(=O)NC3=O)C(=O)O" W6Y SMILES "OpenEye OEToolkits" 1.7.6 "c1cc2cc(ccc2c(c1)C(=O)O)CCC3=C(NC(=O)NC3=O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W6Y "SYSTEMATIC NAME" ACDLabs 12.01 "5-[2-(5-carboxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" W6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[2-(5-carboxynaphthalen-2-yl)ethyl]-2,4-bis(oxidanylidene)-1H-pyrimidine-6-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W6Y "Create component" 2013-03-14 PDBJ W6Y "Initial release" 2014-03-05 RCSB #