data_WA7 # _chem_comp.id WA7 _chem_comp.name "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(4-{[2-nitro-4-(triazan-1-yl)phenyl]amino}butyl)amino]cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H26 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-04 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.424 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WA7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KB8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WA7 N1 N1 N 0 1 N N N -11.185 22.950 -12.883 3.109 0.335 0.754 N1 WA7 1 WA7 N3 N2 N 1 1 N N N -19.459 23.812 -10.747 -5.344 2.436 0.266 N3 WA7 2 WA7 C4 C1 C 0 1 N N S -8.909 23.116 -12.364 4.747 1.633 -0.523 C4 WA7 3 WA7 C5 C2 C 0 1 N N S -10.246 23.800 -12.265 4.283 1.211 0.873 C5 WA7 4 WA7 C6 C3 C 0 1 N N N -10.600 24.109 -10.829 5.412 0.458 1.579 C6 WA7 5 WA7 C7 C4 C 0 1 N N N -10.494 23.539 -8.384 6.912 -1.536 1.474 C7 WA7 6 WA7 C8 C5 C 0 1 N N N -12.567 23.204 -12.408 1.873 1.121 0.650 C8 WA7 7 WA7 C10 C6 C 0 1 N N N -14.919 22.229 -12.870 -0.612 0.996 0.420 C10 WA7 8 WA7 C13 C7 C 0 1 Y N N -17.361 25.462 -13.352 -4.272 -1.198 -0.073 C13 WA7 9 WA7 C15 C8 C 0 1 Y N N -19.108 26.937 -12.688 -6.707 -1.090 -0.176 C15 WA7 10 WA7 C17 C9 C 0 1 Y N N -18.907 24.760 -11.684 -5.427 0.967 0.107 C17 WA7 11 WA7 C1 C10 C 0 1 N N S -10.405 22.988 -9.856 5.783 -0.784 0.767 C1 WA7 12 WA7 C11 C11 C 0 1 N N N -16.001 23.201 -13.340 -1.809 0.051 0.299 C11 WA7 13 WA7 C12 C12 C 0 1 Y N N -17.831 24.504 -12.469 -4.245 0.203 0.076 C12 WA7 14 WA7 C14 C13 C 0 1 Y N N -17.998 26.664 -13.458 -5.444 -1.858 -0.198 C14 WA7 15 WA7 C16 C14 C 0 1 Y N N -19.553 25.977 -11.815 -6.636 0.377 -0.018 C16 WA7 16 WA7 C2 C15 C 0 1 N N S -9.105 22.232 -10.069 6.247 -0.361 -0.628 C2 WA7 17 WA7 C3 C16 C 0 1 N N R -8.923 21.894 -11.511 5.118 0.391 -1.335 C3 WA7 18 WA7 C9 C17 C 0 1 N N N -13.530 22.656 -13.450 0.676 0.176 0.528 C9 WA7 19 WA7 N2 N3 N 0 1 N N N -17.092 23.263 -12.415 -3.042 0.835 0.195 N2 WA7 20 WA7 N4 N4 N 0 1 N N N -19.766 28.209 -12.813 -7.857 -1.694 -0.300 N4 WA7 21 WA7 N5 N5 N 1 1 N N N -20.619 28.532 -13.862 -7.896 -2.811 -0.420 N5 WA7 22 WA7 N6 N6 N -1 1 N N N -19.938 28.974 -15.101 -7.934 -3.928 -0.540 N6 WA7 23 WA7 O1 O1 O 0 1 N N N -9.622 24.551 -8.228 7.338 -2.631 0.660 O1 WA7 24 WA7 O2 O2 O 0 1 N N N -11.445 22.116 -10.089 4.642 -1.636 0.652 O2 WA7 25 WA7 O3 O3 O 0 1 N N N -9.151 21.063 -9.358 6.594 -1.522 -1.387 O3 WA7 26 WA7 O4 O4 O 0 1 N N N -7.734 21.269 -11.650 5.551 0.786 -2.638 O4 WA7 27 WA7 O5 O5 O 0 1 N N N -8.678 22.841 -13.717 3.692 2.336 -1.183 O5 WA7 28 WA7 O6 O6 O 0 1 N N N -18.687 23.016 -9.806 -4.445 2.961 1.072 O6 WA7 29 WA7 O7 O7 O -1 1 N N N -20.889 23.670 -10.758 -6.170 3.218 -0.398 O7 WA7 30 WA7 H1 H1 H 0 1 N N N -10.944 22.001 -12.679 3.062 -0.313 1.526 H1 WA7 31 WA7 H3 H3 H 0 1 N N N -8.138 23.802 -11.984 5.617 2.284 -0.435 H3 WA7 32 WA7 H4 H4 H 0 1 N N N -10.189 24.750 -12.817 4.018 2.096 1.451 H4 WA7 33 WA7 H5 H5 H 0 1 N N N -9.976 24.953 -10.501 6.282 1.109 1.667 H5 WA7 34 WA7 H6 H6 H 0 1 N N N -11.660 24.403 -10.798 5.081 0.157 2.573 H6 WA7 35 WA7 H7 H7 H 0 1 N N N -11.514 23.902 -8.190 7.751 -0.860 1.641 H7 WA7 36 WA7 H8 H8 H 0 1 N N N -10.250 22.733 -7.676 6.554 -1.914 2.431 H8 WA7 37 WA7 H9 H9 H 0 1 N N N -12.726 24.285 -12.284 1.760 1.739 1.541 H9 WA7 38 WA7 H10 H10 H 0 1 N N N -12.730 22.697 -11.446 1.922 1.761 -0.231 H10 WA7 39 WA7 H11 H11 H 0 1 N N N -15.164 21.215 -13.219 -0.562 1.635 -0.461 H11 WA7 40 WA7 H12 H12 H 0 1 N N N -14.873 22.238 -11.771 -0.725 1.613 1.311 H12 WA7 41 WA7 H13 H13 H 0 1 N N N -16.490 25.258 -13.957 -3.344 -1.750 -0.092 H13 WA7 42 WA7 H14 H14 H 0 1 N N N -15.561 24.204 -13.440 -1.695 -0.567 -0.592 H14 WA7 43 WA7 H15 H15 H 0 1 N N N -16.380 22.868 -14.317 -1.858 -0.589 1.180 H15 WA7 44 WA7 H16 H16 H 0 1 N N N -17.630 27.407 -14.150 -5.458 -2.932 -0.312 H16 WA7 45 WA7 H17 H17 H 0 1 N N N -20.429 26.176 -11.215 -7.539 0.969 0.002 H17 WA7 46 WA7 H18 H18 H 0 1 N N N -8.268 22.863 -9.737 7.118 0.289 -0.540 H18 WA7 47 WA7 H19 H19 H 0 1 N N N -9.750 21.244 -11.832 4.247 -0.259 -1.423 H19 WA7 48 WA7 H20 H20 H 0 1 N N N -13.067 21.777 -13.921 0.790 -0.441 -0.363 H20 WA7 49 WA7 H21 H21 H 0 1 N N N -13.697 23.434 -14.210 0.627 -0.463 1.410 H21 WA7 50 WA7 H22 H22 H 0 1 N N N -17.721 22.512 -12.618 -3.003 1.804 0.210 H22 WA7 51 WA7 H27 H27 H 0 1 N N N -9.677 24.883 -7.339 8.054 -3.154 1.046 H27 WA7 52 WA7 H28 H28 H 0 1 N N N -11.377 21.376 -9.497 4.805 -2.445 0.148 H28 WA7 53 WA7 H29 H29 H 0 1 N N N -9.267 21.257 -8.435 6.898 -1.329 -2.284 H29 WA7 54 WA7 H30 H30 H 0 1 N N N -7.723 20.486 -11.113 4.884 1.269 -3.145 H30 WA7 55 WA7 H31 H31 H 0 1 N N N -7.838 22.407 -13.814 3.916 2.635 -2.075 H31 WA7 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WA7 N6 N5 DOUB N N 1 WA7 N5 N4 DOUB N N 2 WA7 O5 C4 SING N N 3 WA7 C14 C13 DOUB Y N 4 WA7 C14 C15 SING Y N 5 WA7 C9 C10 SING N N 6 WA7 C9 C8 SING N N 7 WA7 C13 C12 SING Y N 8 WA7 C11 C10 SING N N 9 WA7 C11 N2 SING N N 10 WA7 N1 C8 SING N N 11 WA7 N1 C5 SING N N 12 WA7 N4 C15 SING N N 13 WA7 C15 C16 DOUB Y N 14 WA7 C12 N2 SING N N 15 WA7 C12 C17 DOUB Y N 16 WA7 C4 C5 SING N N 17 WA7 C4 C3 SING N N 18 WA7 C5 C6 SING N N 19 WA7 C16 C17 SING Y N 20 WA7 C17 N3 SING N N 21 WA7 O4 C3 SING N N 22 WA7 C3 C2 SING N N 23 WA7 C6 C1 SING N N 24 WA7 O7 N3 SING N N 25 WA7 N3 O6 DOUB N N 26 WA7 O2 C1 SING N N 27 WA7 C2 C1 SING N N 28 WA7 C2 O3 SING N N 29 WA7 C1 C7 SING N N 30 WA7 C7 O1 SING N N 31 WA7 N1 H1 SING N N 32 WA7 C4 H3 SING N N 33 WA7 C5 H4 SING N N 34 WA7 C6 H5 SING N N 35 WA7 C6 H6 SING N N 36 WA7 C7 H7 SING N N 37 WA7 C7 H8 SING N N 38 WA7 C8 H9 SING N N 39 WA7 C8 H10 SING N N 40 WA7 C10 H11 SING N N 41 WA7 C10 H12 SING N N 42 WA7 C13 H13 SING N N 43 WA7 C11 H14 SING N N 44 WA7 C11 H15 SING N N 45 WA7 C14 H16 SING N N 46 WA7 C16 H17 SING N N 47 WA7 C2 H18 SING N N 48 WA7 C3 H19 SING N N 49 WA7 C9 H20 SING N N 50 WA7 C9 H21 SING N N 51 WA7 N2 H22 SING N N 52 WA7 O1 H27 SING N N 53 WA7 O2 H28 SING N N 54 WA7 O3 H29 SING N N 55 WA7 O4 H30 SING N N 56 WA7 O5 H31 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WA7 SMILES ACDLabs 12.01 "N(CCCCNc1ccc(cc1[N+](=O)[O-])N=[N+]=[N-])C2C(C(C(C(C2)(CO)O)O)O)O" WA7 InChI InChI 1.03 "InChI=1S/C17H26N6O7/c18-22-21-10-3-4-11(13(7-10)23(29)30)19-5-1-2-6-20-12-8-17(28,9-24)16(27)15(26)14(12)25/h3-4,7,12,14-16,19-20,24-28H,1-2,5-6,8-9H2/t12-,14-,15+,16-,17-/m0/s1" WA7 InChIKey InChI 1.03 XGHNPDUMSGEFTQ-RKOFLFEYSA-N WA7 SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(O)C[C@H](NCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-])[C@H](O)[C@@H](O)[C@@H]1O" WA7 SMILES CACTVS 3.385 "OC[C]1(O)C[CH](NCCCCNc2ccc(cc2[N+]([O-])=O)N=[N+]=[N-])[CH](O)[CH](O)[CH]1O" WA7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCN[C@H]2C[C@@]([C@H]([C@@H]([C@H]2O)O)O)(CO)O" WA7 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N=[N+]=[N-])[N+](=O)[O-])NCCCCNC2CC(C(C(C2O)O)O)(CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WA7 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,5S)-5-({4-[(4-azido-2-nitrophenyl)amino]butyl}amino)-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" WA7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-5-[4-[(4-azido-2-nitro-phenyl)amino]butylamino]-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WA7 "Create component" 2020-10-04 RCSB WA7 "Modify charge" 2020-10-27 RCSB WA7 "Initial release" 2021-10-06 RCSB ##