data_WP4 # _chem_comp.id WP4 _chem_comp.name "(3R)-N-benzylpyrrolidin-3-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-02 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.258 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WP4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WP4 C10 C1 C 0 1 Y N N -27.554 -7.990 -18.980 -3.734 -1.130 0.047 C10 WP4 1 WP4 C13 C2 C 0 1 Y N N -28.135 -8.777 -21.558 -2.249 1.202 0.066 C13 WP4 2 WP4 C01 C3 C 0 1 N N N -30.509 -9.530 -20.879 -0.289 0.036 -0.965 C01 WP4 3 WP4 C03 C4 C 0 1 N N R -32.556 -8.082 -20.668 2.031 -0.292 -0.356 C03 WP4 4 WP4 C04 C5 C 0 1 N N N -33.399 -9.098 -19.901 2.914 -1.191 0.540 C04 WP4 5 WP4 C05 C6 C 0 1 N N N -34.690 -8.253 -19.542 4.251 -0.439 0.672 C05 WP4 6 WP4 C07 C7 C 0 1 N N N -33.514 -7.448 -21.458 2.682 1.105 -0.192 C07 WP4 7 WP4 C08 C8 C 0 1 Y N N -29.090 -8.904 -20.564 -1.700 0.037 -0.435 C08 WP4 8 WP4 C09 C9 C 0 1 Y N N -28.787 -8.507 -19.262 -2.442 -1.129 -0.444 C09 WP4 9 WP4 C11 C10 C 0 1 Y N N -26.597 -7.850 -19.977 -4.286 0.037 0.543 C11 WP4 10 WP4 C12 C11 C 0 1 Y N N -26.895 -8.259 -21.285 -3.543 1.203 0.552 C12 WP4 11 WP4 N02 N1 N 0 1 N N N -31.469 -8.620 -21.523 0.643 -0.282 0.125 N02 WP4 12 WP4 N06 N2 N 0 1 N N N -34.848 -7.410 -20.567 4.134 0.798 -0.130 N06 WP4 13 WP4 H1 H1 H 0 1 N N N -27.321 -7.687 -17.970 -4.314 -2.040 0.039 H1 WP4 14 WP4 H2 H2 H 0 1 N N N -28.370 -9.091 -22.564 -1.669 2.114 0.073 H2 WP4 15 WP4 H3 H3 H 0 1 N N N -30.948 -9.871 -19.930 -0.197 -0.712 -1.752 H3 WP4 16 WP4 H4 H4 H 0 1 N N N -30.360 -10.393 -21.545 -0.052 1.021 -1.369 H4 WP4 17 WP4 H5 H5 H 0 1 N N N -32.126 -7.371 -19.947 2.076 -0.619 -1.394 H5 WP4 18 WP4 H6 H6 H 0 1 N N N -33.651 -9.964 -20.530 2.453 -1.319 1.519 H6 WP4 19 WP4 H7 H7 H 0 1 N N N -32.882 -9.442 -18.993 3.071 -2.160 0.065 H7 WP4 20 WP4 H8 H8 H 0 1 N N N -34.540 -7.698 -18.604 4.434 -0.188 1.717 H8 WP4 21 WP4 H9 H9 H 0 1 N N N -35.567 -8.910 -19.443 5.064 -1.056 0.291 H9 WP4 22 WP4 H10 H10 H 0 1 N N N -33.190 -6.427 -21.709 2.458 1.736 -1.052 H10 WP4 23 WP4 H11 H11 H 0 1 N N N -33.686 -8.017 -22.384 2.349 1.579 0.731 H11 WP4 24 WP4 H12 H12 H 0 1 N N N -29.524 -8.608 -18.479 -2.013 -2.039 -0.836 H12 WP4 25 WP4 H13 H13 H 0 1 N N N -25.630 -7.429 -19.746 -5.297 0.038 0.922 H13 WP4 26 WP4 H14 H14 H 0 1 N N N -26.157 -8.167 -22.068 -3.973 2.114 0.943 H14 WP4 27 WP4 H15 H15 H 0 1 N N N -30.954 -7.842 -21.883 0.532 0.360 0.896 H15 WP4 28 WP4 H17 H17 H 0 1 N N N -34.999 -6.483 -20.223 4.516 0.667 -1.055 H17 WP4 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WP4 C13 C12 DOUB Y N 1 WP4 C13 C08 SING Y N 2 WP4 N02 C01 SING N N 3 WP4 N02 C03 SING N N 4 WP4 C07 C03 SING N N 5 WP4 C07 N06 SING N N 6 WP4 C12 C11 SING Y N 7 WP4 C01 C08 SING N N 8 WP4 C03 C04 SING N N 9 WP4 N06 C05 SING N N 10 WP4 C08 C09 DOUB Y N 11 WP4 C11 C10 DOUB Y N 12 WP4 C04 C05 SING N N 13 WP4 C09 C10 SING Y N 14 WP4 C10 H1 SING N N 15 WP4 C13 H2 SING N N 16 WP4 C01 H3 SING N N 17 WP4 C01 H4 SING N N 18 WP4 C03 H5 SING N N 19 WP4 C04 H6 SING N N 20 WP4 C04 H7 SING N N 21 WP4 C05 H8 SING N N 22 WP4 C05 H9 SING N N 23 WP4 C07 H10 SING N N 24 WP4 C07 H11 SING N N 25 WP4 C09 H12 SING N N 26 WP4 C11 H13 SING N N 27 WP4 C12 H14 SING N N 28 WP4 N02 H15 SING N N 29 WP4 N06 H17 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WP4 SMILES ACDLabs 12.01 "c1cc(ccc1)CNC2CCNC2" WP4 InChI InChI 1.03 "InChI=1S/C11H16N2/c1-2-4-10(5-3-1)8-13-11-6-7-12-9-11/h1-5,11-13H,6-9H2/t11-/m1/s1" WP4 InChIKey InChI 1.03 NFLXIAUKMQBTMN-LLVKDONJSA-N WP4 SMILES_CANONICAL CACTVS 3.385 "C1C[C@H](CN1)NCc2ccccc2" WP4 SMILES CACTVS 3.385 "C1C[CH](CN1)NCc2ccccc2" WP4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN[C@@H]2CCNC2" WP4 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC2CCNC2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WP4 "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-N-benzylpyrrolidin-3-amine" WP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-~{N}-(phenylmethyl)pyrrolidin-3-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WP4 "Create component" 2020-11-02 RCSB WP4 "Initial release" 2020-11-11 RCSB ##