data_WWF # _chem_comp.id WWF _chem_comp.name C2-1-HYDROXY-3-METHYL-BUTYL-THIAMIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H29 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2004-11-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 511.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WWF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1WCI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WWF O1B O1B O 0 1 N N N 68.400 6.579 5.129 -8.724 -0.348 -0.389 O1B WWF 1 WWF PB PB P 0 1 N N N 68.852 5.109 5.242 -7.251 -0.208 0.246 PB WWF 2 WWF O2B O2B O 0 1 N N N 70.243 4.951 4.489 -7.030 -1.360 1.348 O2B WWF 3 WWF O3B O3B O 0 1 N N N 67.838 4.116 4.795 -7.114 1.120 0.886 O3B WWF 4 WWF O3A O3A O 0 1 N N N 69.160 4.933 6.811 -6.148 -0.359 -0.917 O3A WWF 5 WWF PA PA P 0 1 N N R 68.967 3.595 7.723 -4.756 0.178 -0.312 PA WWF 6 WWF O1A O1A O 0 1 N N N 69.248 4.057 9.113 -4.786 1.786 -0.244 O1A WWF 7 WWF O2A O2A O 0 1 N N N 67.693 2.935 7.442 -4.566 -0.370 1.049 O2A WWF 8 WWF O5G O5G O 0 1 N N N 70.092 2.590 7.130 -3.542 -0.297 -1.256 O5G WWF 9 WWF C5B C5B C 0 1 N N N 71.500 2.763 7.469 -2.333 0.106 -0.609 C5B WWF 10 WWF C5A C5A C 0 1 N N N 72.289 1.848 6.519 -1.134 -0.318 -1.459 C5A WWF 11 WWF C5 C5 C 0 1 Y N N 73.762 2.094 6.748 0.141 0.107 -0.776 C5 WWF 12 WWF C4 C4 C 0 1 Y N N 74.769 1.294 7.297 0.909 -0.562 0.122 C4 WWF 13 WWF C4A C4A C 0 1 N N N 74.508 -0.219 7.681 0.530 -1.947 0.580 C4A WWF 14 WWF S1 S1 S 0 1 Y N N 74.446 3.576 6.208 1.061 1.632 -0.922 S1 WWF 15 WWF C2 C2 C 0 1 Y N N 76.089 3.052 6.607 2.333 1.234 0.192 C2 WWF 16 WWF C8 C8 C 0 1 N N R 77.282 3.900 6.305 3.524 2.061 0.604 C8 WWF 17 WWF O9 O9 O 0 1 N N N 78.422 3.531 6.665 3.088 3.367 0.984 O9 WWF 18 WWF C9 C9 C 0 1 N N N 76.969 5.391 6.094 4.500 2.170 -0.570 C9 WWF 19 WWF C10 C10 C 0 1 N N N 78.180 6.172 5.652 5.609 3.163 -0.219 C10 WWF 20 WWF C11 C11 C 0 1 N N N 78.492 5.872 4.194 6.291 2.729 1.080 C11 WWF 21 WWF C12 C12 C 0 1 N N N 77.841 7.641 5.812 6.640 3.196 -1.350 C12 WWF 22 WWF N3 N3 N 1 1 Y N N 76.042 1.844 7.220 1.995 0.025 0.578 N3 WWF 23 WWF C35 C35 C 0 1 N N N 77.219 1.194 7.859 2.838 -0.679 1.547 C35 WWF 24 WWF "C5'" C5* C 0 1 Y N N 77.146 1.472 9.375 3.728 -1.656 0.822 "C5'" WWF 25 WWF "C6'" C6* C 0 1 Y N N 77.053 0.358 10.247 3.240 -2.873 0.390 "C6'" WWF 26 WWF "N1'" N1* N 0 1 Y N N 77.102 0.482 11.580 4.051 -3.707 -0.244 "N1'" WWF 27 WWF "C2'" C2* C 0 1 Y N N 77.301 1.689 12.168 5.311 -3.391 -0.466 "C2'" WWF 28 WWF C2A C2A C 0 1 N N N 77.398 1.856 13.675 6.196 -4.372 -1.192 C2A WWF 29 WWF "N3'" N3* N 0 1 Y N N 77.371 2.821 11.369 5.819 -2.241 -0.072 "N3'" WWF 30 WWF "C4'" C4* C 0 1 Y N N 77.302 2.749 9.967 5.066 -1.350 0.566 "C4'" WWF 31 WWF "N4'" N4* N 0 1 N N N 77.520 3.921 9.326 5.603 -0.141 0.979 "N4'" WWF 32 WWF H1B H1B H 0 1 N N N 68.307 6.950 5.999 -9.352 -0.251 0.340 H1B WWF 33 WWF H2B H2B H 0 1 N N N 70.094 4.919 3.551 -7.127 -2.206 0.891 H2B WWF 34 WWF H1A H1A H 0 1 N N N 69.308 3.305 9.691 -4.911 2.102 -1.149 H1A WWF 35 WWF H5B1 1H5B H 0 0 N N N 71.691 2.504 8.521 -2.270 -0.369 0.371 H5B1 WWF 36 WWF H5B2 2H5B H 0 0 N N N 71.803 3.812 7.335 -2.329 1.189 -0.488 H5B2 WWF 37 WWF H5A1 1H5A H 0 0 N N N 72.025 2.065 5.474 -1.196 0.157 -2.438 H5A1 WWF 38 WWF H5A2 2H5A H 0 0 N N N 72.048 0.795 6.726 -1.138 -1.401 -1.579 H5A2 WWF 39 WWF H4A1 1H4A H 0 0 N N N 73.562 -0.298 8.236 0.898 -2.681 -0.137 H4A1 WWF 40 WWF H4A2 2H4A H 0 0 N N N 75.333 -0.585 8.309 0.973 -2.140 1.557 H4A2 WWF 41 WWF H4A3 3H4A H 0 0 N N N 74.447 -0.825 6.765 -0.555 -2.022 0.652 H4A3 WWF 42 WWF H8 H8 H 0 1 N N N 77.545 3.590 5.283 4.022 1.584 1.448 H8 WWF 43 WWF H9 H9 H 0 1 N N N 78.981 3.437 5.902 2.653 3.753 0.210 H9 WWF 44 WWF H9C1 1H9C H 0 0 N N N 76.632 5.805 7.056 3.967 2.517 -1.454 H9C1 WWF 45 WWF H9C2 2H9C H 0 0 N N N 76.194 5.479 5.319 4.938 1.192 -0.770 H9C2 WWF 46 WWF H10 H10 H 0 1 N N N 79.061 5.900 6.252 5.180 4.157 -0.090 H10 WWF 47 WWF H111 1H11 H 0 0 N N N 79.037 4.919 4.125 5.643 2.960 1.925 H111 WWF 48 WWF H112 2H11 H 0 0 N N N 79.111 6.680 3.778 6.481 1.656 1.050 H112 WWF 49 WWF H113 3H11 H 0 0 N N N 77.553 5.800 3.625 7.236 3.262 1.190 H113 WWF 50 WWF H121 1H12 H 0 0 N N N 76.883 7.852 5.314 7.069 2.203 -1.479 H121 WWF 51 WWF H122 2H12 H 0 0 N N N 78.635 8.252 5.357 6.154 3.505 -2.275 H122 WWF 52 WWF H123 3H12 H 0 0 N N N 77.759 7.885 6.882 7.430 3.904 -1.100 H123 WWF 53 WWF H351 1H35 H 0 0 N N N 78.153 1.596 7.440 3.452 0.042 2.086 H351 WWF 54 WWF H352 2H35 H 0 0 N N N 77.198 0.110 7.673 2.206 -1.219 2.253 H352 WWF 55 WWF "H6'" H6* H 0 1 N N N 76.938 -0.628 9.821 2.209 -3.142 0.567 "H6'" WWF 56 WWF H2A1 1H2A H 0 0 N N N 76.525 2.418 14.038 6.144 -4.184 -2.264 H2A1 WWF 57 WWF H2A2 2H2A H 0 0 N N N 78.318 2.405 13.924 7.224 -4.255 -0.851 H2A2 WWF 58 WWF H2A3 3H2A H 0 0 N N N 77.421 0.866 14.153 5.858 -5.388 -0.984 H2A3 WWF 59 WWF "H4'1" 1H4* H 0 0 N N N 78.380 3.868 8.818 6.562 0.003 0.937 "H4'1" WWF 60 WWF "H4'2" 2H4* H 0 0 N N N 77.574 4.662 9.995 5.021 0.561 1.309 "H4'2" WWF 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WWF O1B PB SING N N 1 WWF O1B H1B SING N N 2 WWF PB O2B SING N N 3 WWF PB O3B DOUB N N 4 WWF PB O3A SING N N 5 WWF O2B H2B SING N N 6 WWF O3A PA SING N N 7 WWF PA O1A SING N N 8 WWF PA O2A DOUB N N 9 WWF PA O5G SING N N 10 WWF O1A H1A SING N N 11 WWF O5G C5B SING N N 12 WWF C5B C5A SING N N 13 WWF C5B H5B1 SING N N 14 WWF C5B H5B2 SING N N 15 WWF C5A C5 SING N N 16 WWF C5A H5A1 SING N N 17 WWF C5A H5A2 SING N N 18 WWF C5 C4 DOUB Y N 19 WWF C5 S1 SING Y N 20 WWF C4 C4A SING N N 21 WWF C4 N3 SING Y N 22 WWF C4A H4A1 SING N N 23 WWF C4A H4A2 SING N N 24 WWF C4A H4A3 SING N N 25 WWF S1 C2 SING Y N 26 WWF C2 C8 SING N N 27 WWF C2 N3 DOUB Y N 28 WWF C8 O9 SING N N 29 WWF C8 C9 SING N N 30 WWF C8 H8 SING N N 31 WWF O9 H9 SING N N 32 WWF C9 C10 SING N N 33 WWF C9 H9C1 SING N N 34 WWF C9 H9C2 SING N N 35 WWF C10 C11 SING N N 36 WWF C10 C12 SING N N 37 WWF C10 H10 SING N N 38 WWF C11 H111 SING N N 39 WWF C11 H112 SING N N 40 WWF C11 H113 SING N N 41 WWF C12 H121 SING N N 42 WWF C12 H122 SING N N 43 WWF C12 H123 SING N N 44 WWF N3 C35 SING N N 45 WWF C35 "C5'" SING N N 46 WWF C35 H351 SING N N 47 WWF C35 H352 SING N N 48 WWF "C5'" "C6'" DOUB Y N 49 WWF "C5'" "C4'" SING Y N 50 WWF "C6'" "N1'" SING Y N 51 WWF "C6'" "H6'" SING N N 52 WWF "N1'" "C2'" DOUB Y N 53 WWF "C2'" C2A SING N N 54 WWF "C2'" "N3'" SING Y N 55 WWF C2A H2A1 SING N N 56 WWF C2A H2A2 SING N N 57 WWF C2A H2A3 SING N N 58 WWF "N3'" "C4'" DOUB Y N 59 WWF "C4'" "N4'" SING N N 60 WWF "N4'" "H4'1" SING N N 61 WWF "N4'" "H4'2" SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WWF SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCCc1sc([n+](c1C)Cc2cnc(nc2N)C)C(O)CC(C)C" WWF SMILES_CANONICAL CACTVS 3.341 "CC(C)C[C@@H](O)c1sc(CCO[P@](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N" WWF SMILES CACTVS 3.341 "CC(C)C[CH](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N" WWF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@@H](CC(C)C)O)CCO[P@@](=O)(O)OP(=O)(O)O" WWF SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(CC(C)C)O)CCOP(=O)(O)OP(=O)(O)O" WWF InChI InChI 1.03 "InChI=1S/C17H28N4O8P2S/c1-10(2)7-14(22)17-21(9-13-8-19-12(4)20-16(13)18)11(3)15(32-17)5-6-28-31(26,27)29-30(23,24)25/h8,10,14,22H,5-7,9H2,1-4H3,(H4-,18,19,20,23,24,25,26,27)/p+1/t14-/m1/s1" WWF InChIKey InChI 1.03 OZAWOYZVNPQFFO-CQSZACIVSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WWF "SYSTEMATIC NAME" ACDLabs 10.04 "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1R)-1-hydroxy-3-methylbutyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium" WWF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-2-[(1R)-1-hydroxy-3-methyl-butyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WWF "Create component" 2004-11-16 RCSB WWF "Modify descriptor" 2011-06-04 RCSB #