data_X2F # _chem_comp.id X2F _chem_comp.name 2-deoxy-2-fluoro-alpha-D-xylopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H9 F O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-DEOXY-2-FLUORO XYLOPYRANOSE; 2-deoxy-2-fluoro-alpha-D-xylose; 2-deoxy-2-fluoro-D-xylose; 2-deoxy-2-fluoro-xylose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 152.121 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XYL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 X2F "2-DEOXY-2-FLUORO XYLOPYRANOSE" PDB ? 2 X2F 2-deoxy-2-fluoro-alpha-D-xylose PDB ? 3 X2F 2-deoxy-2-fluoro-D-xylose PDB ? 4 X2F 2-deoxy-2-fluoro-xylose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X2F C1 C1 C 0 1 N N S 21.616 68.514 36.882 -0.803 0.266 -1.355 C1 X2F 1 X2F C2 C2 C 0 1 N N R 20.869 69.536 37.771 0.639 0.493 -0.901 C2 X2F 2 X2F C3 C3 C 0 1 N N S 20.163 68.861 38.954 0.856 -0.202 0.447 C3 X2F 3 X2F C4 C4 C 0 1 N N R 19.226 67.797 38.388 -0.221 0.279 1.425 C4 X2F 4 X2F C5 C5 C 0 1 N N N 20.030 66.877 37.471 -1.599 0.068 0.795 C5 X2F 5 X2F O1 O1 O 0 1 N Y N 22.602 67.785 37.619 -1.050 -1.136 -1.467 O1 X2F 6 X2F O3 O3 O 0 1 N N N 19.405 69.801 39.705 2.152 0.124 0.952 O3 X2F 7 X2F O4 O4 O 0 1 N N N 18.681 67.023 39.462 -0.131 -0.467 2.640 O4 X2F 8 X2F O5 O5 O 0 1 N N N 20.604 67.638 36.396 -1.704 0.832 -0.404 O5 X2F 9 X2F F2 F2 F 0 1 N N N 21.698 70.588 38.159 1.518 -0.038 -1.851 F2 X2F 10 X2F H1 H1 H 0 1 N N N 22.170 69.023 36.059 -0.957 0.739 -2.325 H1 X2F 11 X2F H2 H2 H 0 1 N N N 20.061 69.989 37.149 0.824 1.562 -0.792 H2 X2F 12 X2F H3 H3 H 0 1 N N N 20.924 68.413 39.634 0.775 -1.281 0.319 H3 X2F 13 X2F H4 H4 H 0 1 N N N 18.398 68.283 37.820 -0.074 1.338 1.636 H4 X2F 14 X2F H51 H51 H 0 1 N N N 20.800 66.296 38.031 -1.735 -0.988 0.565 H51 X2F 15 X2F H52 H52 H 0 1 N N N 19.420 66.020 37.098 -2.371 0.387 1.496 H52 X2F 16 X2F HO1 HO1 H 0 1 N Y N 23.060 67.157 37.073 -1.966 -1.236 -1.759 HO1 X2F 17 X2F HO3 HO3 H 0 1 N Y N 18.967 69.383 40.437 2.793 -0.187 0.300 HO3 X2F 18 X2F HO4 HO4 H 0 1 N N N 18.097 66.360 39.109 -0.827 -0.135 3.224 HO4 X2F 19 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X2F C1 C2 SING N N 1 X2F C1 O1 SING N N 2 X2F C1 O5 SING N N 3 X2F C1 H1 SING N N 4 X2F C2 C3 SING N N 5 X2F C2 F2 SING N N 6 X2F C2 H2 SING N N 7 X2F C3 C4 SING N N 8 X2F C3 O3 SING N N 9 X2F C3 H3 SING N N 10 X2F C4 C5 SING N N 11 X2F C4 O4 SING N N 12 X2F C4 H4 SING N N 13 X2F C5 O5 SING N N 14 X2F C5 H51 SING N N 15 X2F C5 H52 SING N N 16 X2F O1 HO1 SING N N 17 X2F O3 HO3 SING N N 18 X2F O4 HO4 SING N N 19 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X2F SMILES ACDLabs 10.04 "FC1C(O)C(O)COC1O" X2F SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1CO[C@H](O)[C@H](F)[C@H]1O" X2F SMILES CACTVS 3.341 "O[CH]1CO[CH](O)[CH](F)[CH]1O" X2F SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@H]([C@H](O1)O)F)O)O" X2F SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(O1)O)F)O)O" X2F InChI InChI 1.03 "InChI=1S/C5H9FO4/c6-3-4(8)2(7)1-10-5(3)9/h2-5,7-9H,1H2/t2-,3-,4+,5+/m1/s1" X2F InChIKey InChI 1.03 YVMHSZGJGHRGOD-MBMOQRBOSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X2F "SYSTEMATIC NAME" ACDLabs 10.04 2-deoxy-2-fluoro-alpha-D-xylopyranose X2F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5R)-3-fluorooxane-2,4,5-triol" X2F "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Xylp2fluoro # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support X2F "CARBOHYDRATE ISOMER" D PDB ? X2F "CARBOHYDRATE RING" pyranose PDB ? X2F "CARBOHYDRATE ANOMER" alpha PDB ? X2F "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X2F "Create component" 1999-07-08 RCSB X2F "Modify descriptor" 2011-06-04 RCSB X2F "Other modification" 2020-07-03 RCSB X2F "Modify name" 2020-07-17 RCSB X2F "Modify synonyms" 2020-07-17 RCSB X2F "Modify linking type" 2020-07-17 RCSB X2F "Modify leaving atom flag" 2020-07-17 RCSB ##