data_X4U # _chem_comp.id X4U _chem_comp.name Citarinostat _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 Cl N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-[(2-chlorophenyl)(phenyl)amino]-N-[7-(hydroxyamino)-7-oxoheptyl]pyrimidine-5-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-31 _chem_comp.pdbx_modified_date 2023-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.948 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X4U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X4U C01 C1 C 0 1 Y N N N N N 34.938 -57.507 38.204 7.592 2.597 0.337 C01 X4U 1 X4U C02 C2 C 0 1 Y N N N N N 35.271 -56.534 37.272 7.298 1.867 1.474 C02 X4U 2 X4U C03 C3 C 0 1 Y N N N N N 35.567 -55.247 37.706 6.240 0.980 1.473 C03 X4U 3 X4U C04 C4 C 0 1 Y N N N N N 35.535 -54.963 39.064 5.470 0.821 0.328 C04 X4U 4 X4U C05 C5 C 0 1 Y N N N N N 35.204 -55.934 39.998 5.767 1.556 -0.813 C05 X4U 5 X4U C06 C6 C 0 1 Y N N N N N 34.905 -57.216 39.559 6.827 2.441 -0.805 C06 X4U 6 X4U C08 C7 C 0 1 Y N N N N N 36.971 -53.373 40.409 4.636 -1.453 0.418 C08 X4U 7 X4U C09 C8 C 0 1 Y N N N N N 36.731 -53.177 41.755 4.690 -2.066 1.663 C09 X4U 8 X4U C10 C9 C 0 1 Y N N N N N 37.801 -52.935 42.608 4.920 -3.425 1.754 C10 X4U 9 X4U C11 C10 C 0 1 Y N N N N N 39.095 -52.891 42.108 5.097 -4.176 0.606 C11 X4U 10 X4U C12 C11 C 0 1 Y N N N N N 39.337 -53.085 40.766 5.044 -3.570 -0.636 C12 X4U 11 X4U C13 C12 C 0 1 Y N N N N N 38.271 -53.314 39.913 4.814 -2.210 -0.734 C13 X4U 12 X4U C15 C13 C 0 1 Y N N N N N 35.020 -52.521 39.134 3.102 0.394 0.225 C15 X4U 13 X4U C17 C14 C 0 1 Y N N N N N 33.295 -51.674 37.903 1.680 2.181 -0.067 C17 X4U 14 X4U C18 C15 C 0 1 Y N N N N N 33.587 -50.426 38.416 0.588 1.308 0.034 C18 X4U 15 X4U C19 C16 C 0 1 Y N N N N N 34.641 -50.274 39.293 0.844 -0.055 0.231 C19 X4U 16 X4U C21 C17 C 0 1 N N N N N N 32.792 -49.222 37.979 -0.795 1.811 -0.071 C21 X4U 17 X4U C24 C18 C 0 1 N N N N N N 31.564 -48.098 36.216 -3.206 1.456 -0.076 C24 X4U 18 X4U C25 C19 C 0 1 N N N N N N 30.333 -48.473 35.429 -4.185 0.290 0.070 C25 X4U 19 X4U C26 C20 C 0 1 N N N N N N 29.830 -47.201 34.749 -5.620 0.811 -0.039 C26 X4U 20 X4U C27 C21 C 0 1 N N N N N N 28.330 -47.017 34.946 -6.599 -0.355 0.107 C27 X4U 21 X4U C28 C22 C 0 1 N N N N N N 27.883 -45.831 34.092 -8.033 0.167 -0.002 C28 X4U 22 X4U C29 C23 C 0 1 N N N N N N 28.449 -44.532 34.649 -9.012 -1.000 0.144 C29 X4U 23 X4U C30 C24 C 0 1 N N N N N N 27.954 -43.302 33.889 -10.425 -0.486 0.036 C30 X4U 24 X4U N07 N1 N 0 1 N N N N N N 35.839 -53.627 39.537 4.397 -0.077 0.323 N07 X4U 25 X4U N16 N2 N 0 1 Y N N N N N 34.019 -52.711 38.288 2.901 1.691 0.032 N16 X4U 26 X4U N20 N3 N 0 1 Y N N N N N 35.332 -51.342 39.625 2.095 -0.465 0.320 N20 X4U 27 X4U N23 N4 N 0 1 N N N N N N 32.291 -49.270 36.641 -1.833 0.956 0.028 N23 X4U 28 X4U N32 N5 N 0 1 N N N N N N 26.833 -43.460 33.026 -11.462 -1.341 0.136 N32 X4U 29 X4U O22 O1 O 0 1 N N N N N N 32.644 -48.261 38.666 -0.999 2.997 -0.248 O22 X4U 30 X4U O31 O2 O 0 1 N N N N N N 28.460 -42.231 34.004 -10.628 0.697 -0.140 O31 X4U 31 X4U O33 O3 O 0 1 N N N N N N 26.354 -42.357 32.330 -12.790 -0.858 0.035 O33 X4U 32 X4U CL14 CL1 CL 0 0 N N N N N N 38.604 -53.559 38.186 4.748 -1.450 -2.293 CL14 X4U 33 X4U H1 H1 H 0 1 N N N N N N 34.701 -58.506 37.869 8.417 3.293 0.342 H1 X4U 34 X4U H2 H2 H 0 1 N N N N N N 35.300 -56.774 36.220 7.897 1.990 2.364 H2 X4U 35 X4U H3 H3 H 0 1 N N N N N N 35.819 -54.476 36.993 6.011 0.410 2.362 H3 X4U 36 X4U H4 H4 H 0 1 N N N N N N 35.179 -55.696 41.051 5.171 1.434 -1.705 H4 X4U 37 X4U H5 H5 H 0 1 N N N N N N 34.647 -57.986 40.272 7.056 3.016 -1.690 H5 X4U 38 X4U H6 H6 H 0 1 N N N N N N 35.723 -53.211 42.140 4.552 -1.480 2.560 H6 X4U 39 X4U H7 H7 H 0 1 N N N N N N 37.625 -52.781 43.662 4.962 -3.901 2.722 H7 X4U 40 X4U H8 H8 H 0 1 N N N N N N 39.921 -52.703 42.778 5.278 -5.238 0.680 H8 X4U 41 X4U H9 H9 H 0 1 N N N N N N 40.347 -53.059 40.384 5.183 -4.159 -1.530 H9 X4U 42 X4U H10 H10 H 0 1 N N N N N N 32.487 -51.801 37.198 1.524 3.238 -0.224 H10 X4U 43 X4U H11 H11 H 0 1 N N N N N N 34.892 -49.304 39.696 0.029 -0.760 0.314 H11 X4U 44 X4U H12 H12 H 0 1 N N N N N N 32.219 -47.480 35.584 -3.347 1.930 -1.048 H12 X4U 45 X4U H13 H13 H 0 1 N N N N N N 31.261 -47.523 37.103 -3.388 2.185 0.714 H13 X4U 46 X4U H14 H14 H 0 1 N N N N N N 29.561 -48.871 36.104 -4.003 -0.439 -0.720 H14 X4U 47 X4U H15 H15 H 0 1 N N N N N N 30.585 -49.231 34.673 -4.044 -0.184 1.041 H15 X4U 48 X4U H16 H16 H 0 1 N N N N N N 30.044 -47.263 33.672 -5.802 1.540 0.751 H16 X4U 49 X4U H17 H17 H 0 1 N N N N N N 30.356 -46.335 35.178 -5.761 1.285 -1.011 H17 X4U 50 X4U H18 H18 H 0 1 N N N N N N 28.115 -46.816 36.006 -6.416 -1.084 -0.683 H18 X4U 51 X4U H19 H19 H 0 1 N N N N N N 27.798 -47.926 34.630 -6.457 -0.829 1.078 H19 X4U 52 X4U H20 H20 H 0 1 N N N N N N 26.784 -45.777 34.093 -8.216 0.895 0.787 H20 X4U 53 X4U H21 H21 H 0 1 N N N N N N 28.242 -45.970 33.062 -8.175 0.640 -0.974 H21 X4U 54 X4U H22 H22 H 0 1 N N N N N N 29.546 -44.569 34.583 -8.830 -1.729 -0.646 H22 X4U 55 X4U H23 H23 H 0 1 N N N N N N 28.148 -44.440 35.703 -8.871 -1.474 1.115 H23 X4U 56 X4U H24 H24 H 0 1 N N N N N N 32.434 -50.059 36.043 -1.670 0.011 0.169 H24 X4U 57 X4U H25 H25 H 0 1 N N N N N N 26.396 -44.353 32.922 -11.300 -2.287 0.276 H25 X4U 58 X4U H26 H26 H 0 1 N N N N N N 26.879 -41.595 32.544 -13.465 -1.545 0.118 H26 X4U 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X4U O33 N32 SING N N 1 X4U N32 C30 SING N N 2 X4U C30 O31 DOUB N N 3 X4U C30 C29 SING N N 4 X4U C28 C29 SING N N 5 X4U C28 C27 SING N N 6 X4U C26 C27 SING N N 7 X4U C26 C25 SING N N 8 X4U C25 C24 SING N N 9 X4U C24 N23 SING N N 10 X4U N23 C21 SING N N 11 X4U C02 C03 DOUB Y N 12 X4U C02 C01 SING Y N 13 X4U C03 C04 SING Y N 14 X4U C17 N16 DOUB Y N 15 X4U C17 C18 SING Y N 16 X4U C21 C18 SING N N 17 X4U C21 O22 DOUB N N 18 X4U CL14 C13 SING N N 19 X4U C01 C06 DOUB Y N 20 X4U N16 C15 SING Y N 21 X4U C18 C19 DOUB Y N 22 X4U C04 N07 SING N N 23 X4U C04 C05 DOUB Y N 24 X4U C15 N07 SING N N 25 X4U C15 N20 DOUB Y N 26 X4U C19 N20 SING Y N 27 X4U N07 C08 SING N N 28 X4U C06 C05 SING Y N 29 X4U C13 C08 DOUB Y N 30 X4U C13 C12 SING Y N 31 X4U C08 C09 SING Y N 32 X4U C12 C11 DOUB Y N 33 X4U C09 C10 DOUB Y N 34 X4U C11 C10 SING Y N 35 X4U C01 H1 SING N N 36 X4U C02 H2 SING N N 37 X4U C03 H3 SING N N 38 X4U C05 H4 SING N N 39 X4U C06 H5 SING N N 40 X4U C09 H6 SING N N 41 X4U C10 H7 SING N N 42 X4U C11 H8 SING N N 43 X4U C12 H9 SING N N 44 X4U C17 H10 SING N N 45 X4U C19 H11 SING N N 46 X4U C24 H12 SING N N 47 X4U C24 H13 SING N N 48 X4U C25 H14 SING N N 49 X4U C25 H15 SING N N 50 X4U C26 H16 SING N N 51 X4U C26 H17 SING N N 52 X4U C27 H18 SING N N 53 X4U C27 H19 SING N N 54 X4U C28 H20 SING N N 55 X4U C28 H21 SING N N 56 X4U C29 H22 SING N N 57 X4U C29 H23 SING N N 58 X4U N23 H24 SING N N 59 X4U N32 H25 SING N N 60 X4U O33 H26 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X4U SMILES ACDLabs 12.01 "ONC(=O)CCCCCCNC(=O)c1cnc(nc1)N(c1ccccc1Cl)c1ccccc1" X4U InChI InChI 1.06 "InChI=1S/C24H26ClN5O3/c25-20-12-7-8-13-21(20)30(19-10-4-3-5-11-19)24-27-16-18(17-28-24)23(32)26-15-9-2-1-6-14-22(31)29-33/h3-5,7-8,10-13,16-17,33H,1-2,6,9,14-15H2,(H,26,32)(H,29,31)" X4U InChIKey InChI 1.06 VLIUIBXPEDFJRF-UHFFFAOYSA-N X4U SMILES_CANONICAL CACTVS 3.385 "ONC(=O)CCCCCCNC(=O)c1cnc(nc1)N(c2ccccc2)c3ccccc3Cl" X4U SMILES CACTVS 3.385 "ONC(=O)CCCCCCNC(=O)c1cnc(nc1)N(c2ccccc2)c3ccccc3Cl" X4U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N(c2ccccc2Cl)c3ncc(cn3)C(=O)NCCCCCCC(=O)NO" X4U SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N(c2ccccc2Cl)c3ncc(cn3)C(=O)NCCCCCCC(=O)NO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X4U "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2-chlorophenyl)(phenyl)amino]-N-[7-(hydroxyamino)-7-oxoheptyl]pyrimidine-5-carboxamide" X4U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2-chlorophenyl)-phenyl-amino]-~{N}-[7-(oxidanylamino)-7-oxidanylidene-heptyl]pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X4U "Create component" 2023-05-31 RCSB X4U "Initial release" 2023-09-06 RCSB X4U "Modify name" 2023-11-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id X4U _pdbx_chem_comp_synonyms.name "2-[(2-chlorophenyl)(phenyl)amino]-N-[7-(hydroxyamino)-7-oxoheptyl]pyrimidine-5-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #