data_X5Y # _chem_comp.id X5Y _chem_comp.name "tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H39 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-01 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.725 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X5Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KVH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X5Y C10 C1 C 0 1 N N N 15.673 -15.363 9.542 -1.889 1.418 0.304 C10 X5Y 1 X5Y C02 C2 C 0 1 N N N 16.406 -16.142 4.769 -5.772 -3.174 0.030 C02 X5Y 2 X5Y C03 C3 C 0 1 N N N 15.850 -14.761 4.370 -7.094 -2.464 0.329 C03 X5Y 3 X5Y C04 C4 C 0 1 N N N 16.974 -16.857 3.555 -5.790 -4.570 0.657 C04 X5Y 4 X5Y C06 C5 C 0 1 N N N 17.495 -16.624 6.961 -4.518 -1.147 0.140 C06 X5Y 5 X5Y C09 C6 C 0 1 N N S 16.984 -16.228 9.447 -3.348 0.991 0.129 C09 X5Y 6 X5Y C12 C7 C 0 1 N N R 14.267 -18.125 9.660 0.842 0.933 -0.301 C12 X5Y 7 X5Y C13 C8 C 0 1 N N N 13.017 -18.529 8.831 1.060 2.374 -0.770 C13 X5Y 8 X5Y C01 C9 C 0 1 N N N 15.198 -16.990 5.245 -5.590 -3.297 -1.484 C01 X5Y 9 X5Y C14 C10 C 0 1 Y N N 12.602 -20.001 8.878 2.392 2.869 -0.270 C14 X5Y 10 X5Y C15 C11 C 0 1 Y N N 13.097 -20.965 7.983 2.505 3.373 1.013 C15 X5Y 11 X5Y C16 C12 C 0 1 Y N N 12.698 -22.305 8.052 3.727 3.828 1.472 C16 X5Y 12 X5Y C17 C13 C 0 1 Y N N 11.794 -22.730 9.018 4.837 3.777 0.649 C17 X5Y 13 X5Y C18 C14 C 0 1 Y N N 11.296 -21.792 9.912 4.724 3.272 -0.633 C18 X5Y 14 X5Y C19 C15 C 0 1 Y N N 11.701 -20.460 9.833 3.503 2.814 -1.091 C19 X5Y 15 X5Y C20 C16 C 0 1 N N N 14.428 -18.930 10.963 1.856 0.033 -0.958 C20 X5Y 16 X5Y C23 C17 C 0 1 N N N 15.183 -21.059 12.174 4.067 -0.988 -1.054 C23 X5Y 17 X5Y C24 C18 C 0 1 N N N 15.538 -22.529 11.780 5.363 -0.974 -0.242 C24 X5Y 18 X5Y C25 C19 C 0 1 N N N 16.481 -23.266 12.764 6.393 -1.889 -0.909 C25 X5Y 19 X5Y C26 C20 C 0 1 Y N N 17.927 -23.399 12.309 7.670 -1.875 -0.109 C26 X5Y 20 X5Y C27 C21 C 0 1 Y N N 18.964 -23.631 13.234 7.867 -2.787 0.910 C27 X5Y 21 X5Y C29 C22 C 0 1 Y N N 20.640 -23.659 11.628 9.946 -1.914 1.378 C29 X5Y 22 X5Y C30 C23 C 0 1 Y N N 19.696 -23.427 10.623 9.823 -0.976 0.371 C30 X5Y 23 X5Y C31 C24 C 0 1 Y N N 18.347 -23.300 10.977 8.665 -0.951 -0.391 C31 X5Y 24 X5Y C32 C25 C 0 1 N N N 17.891 -15.959 10.698 -4.254 1.932 0.926 C32 X5Y 25 X5Y C33 C26 C 0 1 Y N N 18.635 -17.158 11.269 -5.696 1.589 0.657 C33 X5Y 26 X5Y C34 C27 C 0 1 Y N N 18.330 -17.709 12.521 -6.346 0.664 1.452 C34 X5Y 27 X5Y C35 C28 C 0 1 Y N N 19.026 -18.812 13.030 -7.670 0.349 1.205 C35 X5Y 28 X5Y C36 C29 C 0 1 Y N N 20.054 -19.401 12.303 -8.342 0.959 0.163 C36 X5Y 29 X5Y C37 C30 C 0 1 Y N N 20.372 -18.868 11.061 -7.692 1.883 -0.633 C37 X5Y 30 X5Y C38 C31 C 0 1 Y N N 19.669 -17.768 10.563 -6.371 2.202 -0.382 C38 X5Y 31 X5Y N08 N1 N 0 1 N N N 17.646 -15.901 8.152 -3.518 -0.380 0.618 N08 X5Y 32 X5Y N22 N2 N 0 1 N N N 14.988 -20.203 10.974 3.081 -0.112 -0.415 N22 X5Y 33 X5Y N28 N3 N 0 1 Y N N 20.275 -23.762 12.926 8.982 -2.781 1.614 N28 X5Y 34 X5Y O05 O1 O 0 1 N N N 17.443 -15.954 5.744 -4.674 -2.406 0.589 O05 X5Y 35 X5Y O07 O2 O 0 1 N N N 17.690 -17.843 6.919 -5.279 -0.701 -0.696 O07 X5Y 36 X5Y O21 O3 O 0 1 N N N 14.047 -18.452 12.049 1.570 -0.562 -1.976 O21 X5Y 37 X5Y S11 S1 S 0 1 N N N 14.183 -16.302 10.147 -0.829 0.396 -0.756 S11 X5Y 38 X5Y H1 H1 H 0 1 N N N 15.859 -14.528 10.234 -1.781 2.465 0.023 H1 X5Y 39 X5Y H2 H2 H 0 1 N N N 15.448 -14.966 8.541 -1.595 1.288 1.345 H2 X5Y 40 X5Y H3 H3 H 0 1 N N N 15.443 -14.258 5.260 -7.919 -3.041 -0.091 H3 X5Y 41 X5Y H4 H4 H 0 1 N N N 16.658 -14.150 3.941 -7.224 -2.377 1.407 H4 X5Y 42 X5Y H5 H5 H 0 1 N N N 15.052 -14.889 3.624 -7.082 -1.470 -0.118 H5 X5Y 43 X5Y H6 H6 H 0 1 N N N 17.366 -17.839 3.857 -4.848 -5.075 0.444 H6 X5Y 44 X5Y H7 H7 H 0 1 N N N 16.180 -16.994 2.806 -5.919 -4.482 1.735 H7 X5Y 45 X5Y H8 H8 H 0 1 N N N 17.787 -16.255 3.122 -6.614 -5.146 0.237 H8 X5Y 46 X5Y H9 H9 H 0 1 N N N 16.697 -17.290 9.450 -3.616 1.036 -0.927 H9 X5Y 47 X5Y H10 H10 H 0 1 N N N 15.170 -18.233 9.042 0.959 0.882 0.781 H10 X5Y 48 X5Y H11 H11 H 0 1 N N N 13.218 -18.274 7.780 1.046 2.407 -1.860 H11 X5Y 49 X5Y H12 H12 H 0 1 N N N 12.168 -17.933 9.197 0.265 3.008 -0.377 H12 X5Y 50 X5Y H13 H13 H 0 1 N N N 14.743 -16.518 6.128 -4.648 -3.803 -1.697 H13 X5Y 51 X5Y H14 H14 H 0 1 N N N 14.453 -17.052 4.438 -6.414 -3.874 -1.904 H14 X5Y 52 X5Y H15 H15 H 0 1 N N N 15.541 -18.002 5.506 -5.577 -2.303 -1.930 H15 X5Y 53 X5Y H16 H16 H 0 1 N N N 13.803 -20.664 7.223 1.638 3.413 1.655 H16 X5Y 54 X5Y H17 H17 H 0 1 N N N 13.098 -23.017 7.346 3.815 4.222 2.473 H17 X5Y 55 X5Y H18 H18 H 0 1 N N N 11.487 -23.764 9.072 5.791 4.133 1.007 H18 X5Y 56 X5Y H19 H19 H 0 1 N N N 10.592 -22.095 10.672 5.591 3.233 -1.276 H19 X5Y 57 X5Y H20 H20 H 0 1 N N N 11.298 -19.754 10.544 3.416 2.416 -2.091 H20 X5Y 58 X5Y H21 H21 H 0 1 N N N 16.002 -20.644 12.779 4.267 -0.633 -2.065 H21 X5Y 59 X5Y H22 H22 H 0 1 N N N 14.255 -21.062 12.765 3.676 -2.005 -1.097 H22 X5Y 60 X5Y H23 H23 H 0 1 N N N 14.600 -23.100 11.715 5.754 0.042 -0.199 H23 X5Y 61 X5Y H24 H24 H 0 1 N N N 16.024 -22.509 10.793 5.163 -1.329 0.769 H24 X5Y 62 X5Y H25 H25 H 0 1 N N N 16.475 -22.716 13.716 6.002 -2.905 -0.952 H25 X5Y 63 X5Y H26 H26 H 0 1 N N N 16.081 -24.278 12.923 6.593 -1.534 -1.920 H26 X5Y 64 X5Y H27 H27 H 0 1 N N N 18.690 -23.711 14.276 7.098 -3.513 1.133 H27 X5Y 65 X5Y H28 H28 H 0 1 N N N 21.682 -23.758 11.362 10.845 -1.940 1.976 H28 X5Y 66 X5Y H29 H29 H 0 1 N N N 20.002 -23.347 9.590 10.618 -0.270 0.180 H29 X5Y 67 X5Y H30 H30 H 0 1 N N N 17.614 -23.122 10.205 8.540 -0.230 -1.185 H30 X5Y 68 X5Y H31 H31 H 0 1 N N N 18.640 -15.206 10.412 -4.046 1.821 1.990 H31 X5Y 69 X5Y H32 H32 H 0 1 N N N 17.250 -15.553 11.494 -4.063 2.962 0.623 H32 X5Y 70 X5Y H33 H33 H 0 1 N N N 17.537 -17.271 13.109 -5.821 0.188 2.266 H33 X5Y 71 X5Y H34 H34 H 0 1 N N N 18.761 -19.210 13.999 -8.178 -0.373 1.827 H34 X5Y 72 X5Y H35 H35 H 0 1 N N N 20.592 -20.252 12.694 -9.376 0.712 -0.030 H35 X5Y 73 X5Y H36 H36 H 0 1 N N N 21.167 -19.306 10.476 -8.217 2.359 -1.447 H36 X5Y 74 X5Y H37 H37 H 0 1 N N N 19.938 -17.376 9.593 -5.862 2.925 -1.004 H37 X5Y 75 X5Y H38 H38 H 0 1 N N N 18.246 -15.101 8.131 -2.911 -0.735 1.285 H38 X5Y 76 X5Y H39 H39 H 0 1 N N N 15.286 -20.576 10.096 3.310 0.363 0.399 H39 X5Y 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X5Y C04 C02 SING N N 1 X5Y C03 C02 SING N N 2 X5Y C02 C01 SING N N 3 X5Y C02 O05 SING N N 4 X5Y O05 C06 SING N N 5 X5Y O07 C06 DOUB N N 6 X5Y C06 N08 SING N N 7 X5Y C15 C16 DOUB Y N 8 X5Y C15 C14 SING Y N 9 X5Y C16 C17 SING Y N 10 X5Y N08 C09 SING N N 11 X5Y C13 C14 SING N N 12 X5Y C13 C12 SING N N 13 X5Y C14 C19 DOUB Y N 14 X5Y C17 C18 DOUB Y N 15 X5Y C09 C10 SING N N 16 X5Y C09 C32 SING N N 17 X5Y C10 S11 SING N N 18 X5Y C12 S11 SING N N 19 X5Y C12 C20 SING N N 20 X5Y C19 C18 SING Y N 21 X5Y C38 C37 DOUB Y N 22 X5Y C38 C33 SING Y N 23 X5Y C30 C31 DOUB Y N 24 X5Y C30 C29 SING Y N 25 X5Y C32 C33 SING N N 26 X5Y C20 N22 SING N N 27 X5Y C20 O21 DOUB N N 28 X5Y N22 C23 SING N N 29 X5Y C31 C26 SING Y N 30 X5Y C37 C36 SING Y N 31 X5Y C33 C34 DOUB Y N 32 X5Y C29 N28 DOUB Y N 33 X5Y C24 C23 SING N N 34 X5Y C24 C25 SING N N 35 X5Y C36 C35 DOUB Y N 36 X5Y C26 C25 SING N N 37 X5Y C26 C27 DOUB Y N 38 X5Y C34 C35 SING Y N 39 X5Y N28 C27 SING Y N 40 X5Y C10 H1 SING N N 41 X5Y C10 H2 SING N N 42 X5Y C03 H3 SING N N 43 X5Y C03 H4 SING N N 44 X5Y C03 H5 SING N N 45 X5Y C04 H6 SING N N 46 X5Y C04 H7 SING N N 47 X5Y C04 H8 SING N N 48 X5Y C09 H9 SING N N 49 X5Y C12 H10 SING N N 50 X5Y C13 H11 SING N N 51 X5Y C13 H12 SING N N 52 X5Y C01 H13 SING N N 53 X5Y C01 H14 SING N N 54 X5Y C01 H15 SING N N 55 X5Y C15 H16 SING N N 56 X5Y C16 H17 SING N N 57 X5Y C17 H18 SING N N 58 X5Y C18 H19 SING N N 59 X5Y C19 H20 SING N N 60 X5Y C23 H21 SING N N 61 X5Y C23 H22 SING N N 62 X5Y C24 H23 SING N N 63 X5Y C24 H24 SING N N 64 X5Y C25 H25 SING N N 65 X5Y C25 H26 SING N N 66 X5Y C27 H27 SING N N 67 X5Y C29 H28 SING N N 68 X5Y C30 H29 SING N N 69 X5Y C31 H30 SING N N 70 X5Y C32 H31 SING N N 71 X5Y C32 H32 SING N N 72 X5Y C34 H33 SING N N 73 X5Y C35 H34 SING N N 74 X5Y C36 H35 SING N N 75 X5Y C37 H36 SING N N 76 X5Y C38 H37 SING N N 77 X5Y N08 H38 SING N N 78 X5Y N22 H39 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X5Y SMILES ACDLabs 12.01 "C(SC(C(NCCCc1cnccc1)=O)Cc2ccccc2)C(Cc3ccccc3)NC(OC(C)(C)C)=O" X5Y InChI InChI 1.03 "InChI=1S/C31H39N3O3S/c1-31(2,3)37-30(36)34-27(20-24-12-6-4-7-13-24)23-38-28(21-25-14-8-5-9-15-25)29(35)33-19-11-17-26-16-10-18-32-22-26/h4-10,12-16,18,22,27-28H,11,17,19-21,23H2,1-3H3,(H,33,35)(H,34,36)/t27-,28+/m0/s1" X5Y InChIKey InChI 1.03 BOLACONGUVQQHM-WUFINQPMSA-N X5Y SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@H](CS[C@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3ccccc3" X5Y SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3ccccc3" X5Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N[C@@H](Cc1ccccc1)CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3" X5Y SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC(Cc1ccccc1)CSC(Cc2ccccc2)C(=O)NCCCc3cccnc3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X5Y "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate" X5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-3-phenyl-propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X5Y "Create component" 2020-12-01 RCSB X5Y "Initial release" 2021-01-20 RCSB ##