data_X6J # _chem_comp.id X6J _chem_comp.name "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H41 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-01 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 583.783 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KVP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6J C10 C1 C 0 1 N N N -23.377 -15.120 -9.130 -1.846 0.705 -0.369 C10 X6J 1 X6J C01 C2 C 0 1 N N N -25.629 -10.470 -9.774 -1.154 -4.122 -1.132 C01 X6J 2 X6J C02 C3 C 0 1 N N N -24.891 -11.343 -10.806 -2.568 -4.362 -0.600 C02 X6J 3 X6J C03 C4 C 0 1 N N N -25.834 -12.441 -11.248 -3.558 -4.367 -1.766 C03 X6J 4 X6J C04 C5 C 0 1 N N N -24.557 -10.535 -12.049 -2.621 -5.712 0.119 C04 X6J 5 X6J C06 C6 C 0 1 N N N -22.833 -12.634 -11.093 -2.923 -2.046 -0.148 C06 X6J 6 X6J C09 C7 C 0 1 N N R -22.423 -14.968 -10.291 -3.244 0.352 0.143 C09 X6J 7 X6J C12 C8 C 0 1 N N S -24.299 -17.427 -7.770 0.937 0.873 0.169 C12 X6J 8 X6J C13 C9 C 0 1 N N N -25.145 -18.660 -7.999 1.009 2.330 -0.291 C13 X6J 9 X6J C14 C10 C 0 1 Y N N -25.045 -19.387 -6.685 2.266 2.540 -1.096 C14 X6J 10 X6J C15 C11 C 0 1 Y N N -24.964 -20.761 -6.674 2.286 2.224 -2.441 C15 X6J 11 X6J C16 C12 C 0 1 Y N N -24.849 -21.369 -5.448 3.439 2.417 -3.180 C16 X6J 12 X6J C17 C13 C 0 1 Y N N -24.812 -20.625 -4.286 4.571 2.927 -2.572 C17 X6J 13 X6J C18 C14 C 0 1 Y N N -24.873 -19.247 -4.301 4.551 3.244 -1.227 C18 X6J 14 X6J C19 C15 C 0 1 Y N N -25.004 -18.629 -5.512 3.397 3.055 -0.490 C19 X6J 15 X6J C20 C16 C 0 1 N N N -22.851 -17.694 -7.284 2.060 0.594 1.133 C20 X6J 16 X6J C23 C17 C 0 1 N N N -20.816 -18.932 -6.896 4.395 0.079 1.607 C23 X6J 17 X6J C24 C18 C 0 1 N N N -19.951 -20.143 -7.214 5.688 -0.163 0.826 C24 X6J 18 X6J C25 C19 C 0 1 N N N -20.806 -21.286 -7.737 6.829 -0.446 1.806 C25 X6J 19 X6J C26 C20 C 0 1 Y N N -20.160 -21.897 -8.968 8.104 -0.684 1.037 C26 X6J 20 X6J C27 C21 C 0 1 Y N N -20.982 -22.229 -10.016 8.945 0.374 0.728 C27 X6J 21 X6J C28 C22 C 0 1 Y N N -20.415 -22.777 -11.138 10.107 0.108 0.019 C28 X6J 22 X6J C29 C23 C 0 1 Y N N -19.043 -22.981 -11.171 10.385 -1.194 -0.353 C29 X6J 23 X6J C31 C24 C 0 1 Y N N -18.788 -22.111 -9.060 8.451 -1.960 0.636 C31 X6J 24 X6J C32 C25 C 0 1 N N N -22.189 -16.318 -10.966 -4.250 0.461 -1.005 C32 X6J 25 X6J C33 C26 C 0 1 Y N N -20.866 -16.942 -10.516 -5.642 0.233 -0.475 C33 X6J 26 X6J C34 C27 C 0 1 Y N N -20.150 -16.477 -9.411 -6.203 -1.005 -0.533 C34 X6J 27 X6J C35 C28 C 0 1 Y N N -18.944 -17.103 -9.067 -7.489 -1.235 -0.048 C35 X6J 28 X6J C36 C29 C 0 1 Y N N -18.467 -18.177 -9.815 -8.223 -0.227 0.498 C36 X6J 29 X6J C37 C30 C 0 1 Y N N -19.217 -18.635 -10.944 -7.677 1.066 0.576 C37 X6J 30 X6J C38 C31 C 0 1 Y N N -18.777 -19.723 -11.741 -8.404 2.132 1.132 C38 X6J 31 X6J C39 C32 C 0 1 Y N N -19.527 -20.144 -12.841 -7.843 3.372 1.191 C39 X6J 32 X6J C40 C33 C 0 1 Y N N -20.729 -19.511 -13.166 -6.557 3.601 0.706 C40 X6J 33 X6J C41 C34 C 0 1 Y N N -21.163 -18.448 -12.392 -5.824 2.592 0.160 C41 X6J 34 X6J C42 C35 C 0 1 Y N N -20.387 -18.023 -11.277 -6.367 1.298 0.088 C42 X6J 35 X6J N08 N1 N 0 1 N N N -23.037 -14.080 -11.261 -3.242 -1.017 0.663 N08 X6J 36 X6J N22 N2 N 0 1 N N N -22.161 -18.967 -7.466 3.302 0.350 0.669 N22 X6J 37 X6J N30 N3 N 0 1 Y N N -18.279 -22.644 -10.153 9.561 -2.175 -0.042 N30 X6J 38 X6J O05 O1 O 0 1 N N N -23.700 -11.897 -10.227 -2.921 -3.304 0.330 O05 X6J 39 X6J O07 O2 O 0 1 N N N -21.951 -12.106 -11.684 -2.637 -1.837 -1.310 O07 X6J 40 X6J O21 O3 O 0 1 N N N -22.266 -16.846 -6.698 1.848 0.589 2.327 O21 X6J 41 X6J S11 S1 S 0 1 N N N -24.229 -16.690 -9.392 -0.653 0.577 0.991 S11 X6J 42 X6J H1 H1 H 0 1 N N N -22.823 -15.139 -8.180 -1.566 0.015 -1.165 H1 X6J 43 X6J H2 H2 H 0 1 N N N -24.099 -14.290 -9.117 -1.847 1.724 -0.756 H2 X6J 44 X6J H3 H3 H 0 1 N N N -25.862 -11.072 -8.883 -0.449 -4.119 -0.300 H3 X6J 45 X6J H4 H4 H 0 1 N N N -24.990 -9.622 -9.487 -0.889 -4.916 -1.829 H4 X6J 46 X6J H5 H5 H 0 1 N N N -26.563 -10.092 -10.215 -1.116 -3.161 -1.644 H5 X6J 47 X6J H6 H6 H 0 1 N N N -26.109 -13.060 -10.381 -3.520 -3.405 -2.279 H6 X6J 48 X6J H7 H7 H 0 1 N N N -26.740 -11.993 -11.681 -3.293 -5.161 -2.465 H7 X6J 49 X6J H8 H8 H 0 1 N N N -25.338 -13.068 -12.003 -4.565 -4.538 -1.388 H8 X6J 50 X6J H9 H9 H 0 1 N N N -23.870 -9.718 -11.782 -3.628 -5.883 0.498 H9 X6J 51 X6J H10 H10 H 0 1 N N N -24.078 -11.188 -12.793 -2.356 -6.506 -0.579 H10 X6J 52 X6J H11 H11 H 0 1 N N N -25.481 -10.113 -12.471 -1.916 -5.708 0.951 H11 X6J 53 X6J H12 H12 H 0 1 N N N -21.465 -14.558 -9.938 -3.524 1.043 0.938 H12 X6J 54 X6J H13 H13 H 0 1 N N N -24.807 -16.717 -7.100 1.027 0.214 -0.695 H13 X6J 55 X6J H14 H14 H 0 1 N N N -26.187 -18.389 -8.222 0.140 2.560 -0.908 H14 X6J 56 X6J H15 H15 H 0 1 N N N -24.741 -19.270 -8.820 1.021 2.986 0.579 H15 X6J 57 X6J H16 H16 H 0 1 N N N -24.990 -21.335 -7.588 1.402 1.825 -2.916 H16 X6J 58 X6J H17 H17 H 0 1 N N N -24.787 -22.446 -5.392 3.455 2.169 -4.231 H17 X6J 59 X6J H18 H18 H 0 1 N N N -24.733 -21.136 -3.338 5.472 3.077 -3.149 H18 X6J 60 X6J H19 H19 H 0 1 N N N -24.819 -18.676 -3.386 5.436 3.642 -0.752 H19 X6J 61 X6J H20 H20 H 0 1 N N N -25.076 -17.553 -5.563 3.380 3.307 0.560 H20 X6J 62 X6J H21 H21 H 0 1 N N N -20.305 -18.037 -7.281 4.156 -0.806 2.197 H21 X6J 63 X6J H22 H22 H 0 1 N N N -20.911 -18.858 -5.803 4.525 0.934 2.270 H22 X6J 64 X6J H23 H23 H 0 1 N N N -19.433 -20.468 -6.300 5.558 -1.018 0.163 H23 X6J 65 X6J H24 H24 H 0 1 N N N -19.209 -19.867 -7.978 5.927 0.722 0.236 H24 X6J 66 X6J H25 H25 H 0 1 N N N -21.803 -20.904 -8.001 6.959 0.409 2.469 H25 X6J 67 X6J H26 H26 H 0 1 N N N -20.903 -22.055 -6.957 6.590 -1.331 2.396 H26 X6J 68 X6J H27 H27 H 0 1 N N N -22.048 -22.063 -9.958 8.701 1.381 1.032 H27 X6J 69 X6J H28 H28 H 0 1 N N N -21.029 -23.046 -11.985 10.785 0.907 -0.239 H28 X6J 70 X6J H29 H29 H 0 1 N N N -18.594 -23.424 -12.047 11.288 -1.409 -0.905 H29 X6J 71 X6J H30 H30 H 0 1 N N N -18.142 -21.841 -8.238 7.803 -2.790 0.877 H30 X6J 72 X6J H31 H31 H 0 1 N N N -22.165 -16.174 -12.056 -4.188 1.454 -1.449 H31 X6J 73 X6J H32 H32 H 0 1 N N N -23.013 -16.998 -10.704 -4.022 -0.291 -1.760 H32 X6J 74 X6J H33 H33 H 0 1 N N N -20.521 -15.646 -8.829 -5.642 -1.823 -0.962 H33 X6J 75 X6J H34 H34 H 0 1 N N N -18.381 -16.750 -8.216 -7.911 -2.227 -0.107 H34 X6J 76 X6J H35 H35 H 0 1 N N N -17.539 -18.660 -9.545 -9.218 -0.419 0.869 H35 X6J 77 X6J H36 H36 H 0 1 N N N -17.855 -20.229 -11.495 -9.402 1.970 1.511 H36 X6J 78 X6J H37 H37 H 0 1 N N N -19.175 -20.966 -13.446 -8.404 4.189 1.619 H37 X6J 79 X6J H38 H38 H 0 1 N N N -21.313 -19.847 -14.011 -6.136 4.594 0.765 H38 X6J 80 X6J H39 H39 H 0 1 N N N -22.087 -17.943 -12.633 -4.829 2.785 -0.212 H39 X6J 81 X6J H40 H40 H 0 1 N N N -23.581 -14.440 -12.019 -3.470 -1.184 1.591 H40 X6J 82 X6J H41 H41 H 0 1 N N N -22.558 -19.763 -7.923 3.472 0.354 -0.286 H41 X6J 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6J C40 C39 DOUB Y N 1 X6J C40 C41 SING Y N 2 X6J C39 C38 SING Y N 3 X6J C41 C42 DOUB Y N 4 X6J C04 C02 SING N N 5 X6J C38 C37 DOUB Y N 6 X6J O07 C06 DOUB N N 7 X6J C42 C37 SING Y N 8 X6J C42 C33 SING Y N 9 X6J N08 C06 SING N N 10 X6J N08 C09 SING N N 11 X6J C03 C02 SING N N 12 X6J C29 C28 DOUB Y N 13 X6J C29 N30 SING Y N 14 X6J C28 C27 SING Y N 15 X6J C06 O05 SING N N 16 X6J C32 C33 SING N N 17 X6J C32 C09 SING N N 18 X6J C37 C36 SING Y N 19 X6J C02 O05 SING N N 20 X6J C02 C01 SING N N 21 X6J C33 C34 DOUB Y N 22 X6J C09 C10 SING N N 23 X6J N30 C31 DOUB Y N 24 X6J C27 C26 DOUB Y N 25 X6J C36 C35 DOUB Y N 26 X6J C34 C35 SING Y N 27 X6J S11 C10 SING N N 28 X6J S11 C12 SING N N 29 X6J C31 C26 SING Y N 30 X6J C26 C25 SING N N 31 X6J C13 C12 SING N N 32 X6J C13 C14 SING N N 33 X6J C12 C20 SING N N 34 X6J C25 C24 SING N N 35 X6J N22 C20 SING N N 36 X6J N22 C23 SING N N 37 X6J C20 O21 DOUB N N 38 X6J C24 C23 SING N N 39 X6J C14 C15 DOUB Y N 40 X6J C14 C19 SING Y N 41 X6J C15 C16 SING Y N 42 X6J C19 C18 DOUB Y N 43 X6J C16 C17 DOUB Y N 44 X6J C18 C17 SING Y N 45 X6J C10 H1 SING N N 46 X6J C10 H2 SING N N 47 X6J C01 H3 SING N N 48 X6J C01 H4 SING N N 49 X6J C01 H5 SING N N 50 X6J C03 H6 SING N N 51 X6J C03 H7 SING N N 52 X6J C03 H8 SING N N 53 X6J C04 H9 SING N N 54 X6J C04 H10 SING N N 55 X6J C04 H11 SING N N 56 X6J C09 H12 SING N N 57 X6J C12 H13 SING N N 58 X6J C13 H14 SING N N 59 X6J C13 H15 SING N N 60 X6J C15 H16 SING N N 61 X6J C16 H17 SING N N 62 X6J C17 H18 SING N N 63 X6J C18 H19 SING N N 64 X6J C19 H20 SING N N 65 X6J C23 H21 SING N N 66 X6J C23 H22 SING N N 67 X6J C24 H23 SING N N 68 X6J C24 H24 SING N N 69 X6J C25 H25 SING N N 70 X6J C25 H26 SING N N 71 X6J C27 H27 SING N N 72 X6J C28 H28 SING N N 73 X6J C29 H29 SING N N 74 X6J C31 H30 SING N N 75 X6J C32 H31 SING N N 76 X6J C32 H32 SING N N 77 X6J C34 H33 SING N N 78 X6J C35 H34 SING N N 79 X6J C36 H35 SING N N 80 X6J C38 H36 SING N N 81 X6J C39 H37 SING N N 82 X6J C40 H38 SING N N 83 X6J C41 H39 SING N N 84 X6J N08 H40 SING N N 85 X6J N22 H41 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6J SMILES ACDLabs 12.01 "C(C(Cc1cccc2ccccc12)NC(OC(C)(C)C)=O)SC(C(=O)NCCCc3cccnc3)Cc4ccccc4" X6J InChI InChI 1.03 "InChI=1S/C35H41N3O3S/c1-35(2,3)41-34(40)38-30(23-29-18-9-17-28-16-7-8-19-31(28)29)25-42-32(22-26-12-5-4-6-13-26)33(39)37-21-11-15-27-14-10-20-36-24-27/h4-10,12-14,16-20,24,30,32H,11,15,21-23,25H2,1-3H3,(H,37,39)(H,38,40)/t30-,32+/m1/s1" X6J InChIKey InChI 1.03 XDOKSTKEPWQDPB-BHYZAODMSA-N X6J SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@@H](CS[C@@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34" X6J SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34" X6J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N[C@H](Cc1cccc2c1cccc2)CS[C@@H](Cc3ccccc3)C(=O)NCCCc4cccnc4" X6J SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCCc4cccnc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6J "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2R)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" X6J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{R})-1-naphthalen-1-yl-3-[(2~{S})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6J "Create component" 2020-12-01 RCSB X6J "Initial release" 2021-01-20 RCSB ##