data_X6S # _chem_comp.id X6S _chem_comp.name "tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H41 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-01 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 583.783 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KVO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6S C12 C1 C 0 1 N N R 2.711 -18.155 -46.579 -0.518 -0.455 -0.409 C12 X6S 1 X6S C10 C2 C 0 1 N N N 2.613 -15.567 -44.867 2.230 0.146 -0.021 C10 X6S 2 X6S C14 C3 C 0 1 Y N N 2.337 -20.012 -48.234 -1.485 -2.366 0.841 C14 X6S 3 X6S C15 C4 C 0 1 Y N N 1.405 -20.997 -48.557 -2.576 -2.951 0.226 C15 X6S 4 X6S C17 C5 C 0 1 Y N N 3.170 -22.535 -49.141 -3.643 -3.202 2.354 C17 X6S 5 X6S C20 C6 C 0 1 N N N 2.075 -18.646 -45.285 -1.725 -0.362 -1.306 C20 X6S 6 X6S C01 C7 C 0 1 N N N 7.212 -13.335 -46.213 3.434 5.239 1.789 C01 X6S 7 X6S C02 C8 C 0 1 N N N 6.751 -12.269 -45.218 2.281 5.197 0.784 C02 X6S 8 X6S C03 C9 C 0 1 N N N 7.970 -11.413 -44.827 1.014 4.698 1.482 C03 X6S 9 X6S C04 C10 C 0 1 N N N 5.729 -11.314 -45.853 2.037 6.602 0.228 C04 X6S 10 X6S C06 C11 C 0 1 N N N 5.036 -13.564 -44.075 2.910 3.024 0.023 C06 X6S 11 X6S C09 C12 C 0 1 N N S 3.956 -15.851 -44.108 3.515 0.746 -0.593 C09 X6S 12 X6S C13 C13 C 0 1 N N N 1.913 -18.675 -47.756 -0.310 -1.910 0.016 C13 X6S 13 X6S C16 C14 C 0 1 Y N N 1.816 -22.248 -49.005 -3.655 -3.369 0.982 C16 X6S 14 X6S C18 C15 C 0 1 Y N N 4.100 -21.563 -48.804 -2.555 -2.613 2.969 C18 X6S 15 X6S C19 C16 C 0 1 Y N N 3.692 -20.314 -48.362 -1.476 -2.194 2.213 C19 X6S 16 X6S C23 C17 C 0 1 N N N 2.195 -20.033 -43.136 -4.130 -0.156 -1.642 C23 X6S 17 X6S C24 C18 C 0 1 N N N 1.398 -21.362 -43.186 -5.393 -0.034 -0.786 C24 X6S 18 X6S C25 C19 C 0 1 N N N 2.206 -22.663 -43.094 -6.618 0.061 -1.697 C25 X6S 19 X6S C26 C20 C 0 1 Y N N 3.330 -22.700 -42.078 -7.862 0.182 -0.855 C26 X6S 20 X6S C27 C21 C 0 1 Y N N 4.671 -22.473 -42.398 -8.543 -0.953 -0.441 C27 X6S 21 X6S C28 C22 C 0 1 Y N N 5.668 -22.522 -41.419 -9.682 -0.793 0.333 C28 X6S 22 X6S C29 C23 C 0 1 Y N N 5.304 -22.804 -40.101 -10.099 0.482 0.663 C29 X6S 23 X6S C31 C24 C 0 1 Y N N 3.076 -22.973 -40.719 -8.336 1.425 -0.481 C31 X6S 24 X6S C32 C25 C 0 1 N N N 3.750 -15.786 -42.546 4.632 0.646 0.448 C32 X6S 25 X6S C33 C26 C 0 1 Y N N 4.096 -16.991 -41.709 4.966 -0.803 0.689 C33 X6S 26 X6S C34 C27 C 0 1 Y N N 5.427 -17.536 -41.614 5.830 -1.484 -0.185 C34 X6S 27 X6S C35 C28 C 0 1 Y N N 6.527 -16.977 -42.303 6.401 -0.840 -1.296 C35 X6S 28 X6S C36 C29 C 0 1 Y N N 7.779 -17.514 -42.199 7.234 -1.531 -2.120 C36 X6S 29 X6S C37 C30 C 0 1 Y N N 8.027 -18.642 -41.397 7.531 -2.872 -1.881 C37 X6S 30 X6S C38 C31 C 0 1 Y N N 6.994 -19.209 -40.714 6.997 -3.528 -0.815 C38 X6S 31 X6S C39 C32 C 0 1 Y N N 5.693 -18.659 -40.820 6.133 -2.847 0.059 C39 X6S 32 X6S C40 C33 C 0 1 Y N N 4.653 -19.279 -40.096 5.562 -3.491 1.170 C40 X6S 33 X6S C41 C34 C 0 1 Y N N 3.399 -18.759 -40.189 4.729 -2.800 1.995 C41 X6S 34 X6S C42 C35 C 0 1 Y N N 3.122 -17.626 -40.983 4.436 -1.459 1.758 C42 X6S 35 X6S N08 N1 N 0 1 N N N 5.020 -14.905 -44.509 3.289 2.153 -0.933 N08 X6S 36 X6S N22 N2 N 0 1 N N N 2.727 -19.519 -44.387 -2.957 -0.247 -0.769 N22 X6S 37 X6S N30 N3 N 0 1 Y N N 4.016 -23.029 -39.748 -9.427 1.539 0.251 N30 X6S 38 X6S O05 O1 O 0 1 N N N 6.287 -12.956 -44.030 2.621 4.298 -0.304 O05 X6S 39 X6S O07 O2 O 0 1 N N N 4.036 -12.944 -43.761 2.829 2.660 1.179 O07 X6S 40 X6S O21 O3 O 0 1 N N N 0.941 -18.313 -44.964 -1.589 -0.391 -2.511 O21 X6S 41 X6S S11 S1 S 0 1 N N N 2.622 -16.281 -46.585 0.947 0.129 -1.304 S11 X6S 42 X6S H1 H1 H 0 1 N N N 3.772 -18.437 -46.645 -0.674 0.163 0.476 H1 X6S 43 X6S H2 H2 H 0 1 N N N 2.466 -14.479 -44.935 2.422 -0.873 0.314 H2 X6S 44 X6S H3 H3 H 0 1 N N N 1.783 -16.014 -44.300 1.892 0.748 0.822 H3 X6S 45 X6S H4 H4 H 0 1 N N N 0.350 -20.786 -48.458 -2.585 -3.082 -0.846 H4 X6S 46 X6S H5 H5 H 0 1 N N N 3.492 -23.500 -49.503 -4.486 -3.529 2.945 H5 X6S 47 X6S H6 H6 H 0 1 N N N 7.941 -14.000 -45.727 3.653 4.228 2.134 H6 X6S 48 X6S H7 H7 H 0 1 N N N 6.345 -13.924 -46.547 4.318 5.660 1.310 H7 X6S 49 X6S H8 H8 H 0 1 N N N 7.681 -12.848 -47.081 3.152 5.860 2.640 H8 X6S 50 X6S H9 H9 H 0 1 N N N 7.660 -10.638 -44.110 0.760 5.372 2.299 H9 X6S 51 X6S H10 H10 H 0 1 N N N 8.735 -12.054 -44.365 0.193 4.668 0.766 H10 X6S 52 X6S H11 H11 H 0 1 N N N 8.386 -10.935 -45.726 1.188 3.697 1.878 H11 X6S 53 X6S H12 H12 H 0 1 N N N 5.419 -10.562 -45.112 2.940 6.957 -0.269 H12 X6S 54 X6S H13 H13 H 0 1 N N N 6.186 -10.810 -46.718 1.216 6.571 -0.488 H13 X6S 55 X6S H14 H14 H 0 1 N N N 4.850 -11.886 -46.184 1.783 7.276 1.046 H14 X6S 56 X6S H15 H15 H 0 1 N N N 4.275 -16.873 -44.361 3.805 0.198 -1.490 H15 X6S 57 X6S H16 H16 H 0 1 N N N 2.019 -17.962 -48.587 -0.222 -2.539 -0.870 H16 X6S 58 X6S H17 H17 H 0 1 N N N 0.856 -18.735 -47.457 0.602 -1.988 0.609 H17 X6S 59 X6S H18 H18 H 0 1 N N N 1.080 -23.000 -49.248 -4.507 -3.826 0.501 H18 X6S 60 X6S H19 H19 H 0 1 N N N 5.154 -21.782 -48.887 -2.545 -2.482 4.041 H19 X6S 61 X6S H20 H20 H 0 1 N N N 4.432 -19.567 -48.114 -0.625 -1.734 2.693 H20 X6S 62 X6S H21 H21 H 0 1 N N N 3.045 -20.185 -42.455 -4.194 -1.053 -2.258 H21 X6S 63 X6S H22 H22 H 0 1 N N N 1.526 -19.264 -42.722 -4.039 0.720 -2.283 H22 X6S 64 X6S H23 H23 H 0 1 N N N 0.686 -21.354 -42.348 -5.484 -0.910 -0.145 H23 X6S 65 X6S H24 H24 H 0 1 N N N 0.845 -21.382 -44.137 -5.328 0.863 -0.170 H24 X6S 66 X6S H25 H25 H 0 1 N N N 1.505 -23.473 -42.844 -6.528 0.937 -2.339 H25 X6S 67 X6S H26 H26 H 0 1 N N N 2.646 -22.852 -44.084 -6.683 -0.836 -2.314 H26 X6S 68 X6S H27 H27 H 0 1 N N N 4.942 -22.256 -43.420 -8.193 -1.938 -0.715 H27 X6S 69 X6S H28 H28 H 0 1 N N N 6.701 -22.345 -41.678 -10.238 -1.655 0.673 H28 X6S 70 X6S H29 H29 H 0 1 N N N 6.071 -22.844 -39.342 -10.986 0.615 1.265 H29 X6S 71 X6S H30 H30 H 0 1 N N N 2.051 -23.151 -40.430 -7.809 2.314 -0.796 H30 X6S 72 X6S H31 H31 H 0 1 N N N 4.362 -14.950 -42.175 5.517 1.167 0.083 H31 X6S 73 X6S H32 H32 H 0 1 N N N 2.686 -15.567 -42.371 4.301 1.103 1.381 H32 X6S 74 X6S H33 H33 H 0 1 N N N 6.375 -16.107 -42.925 6.180 0.199 -1.494 H33 X6S 75 X6S H34 H34 H 0 1 N N N 8.595 -17.063 -42.744 7.672 -1.034 -2.973 H34 X6S 76 X6S H35 H35 H 0 1 N N N 9.023 -19.053 -41.324 8.195 -3.398 -2.551 H35 X6S 77 X6S H36 H36 H 0 1 N N N 7.166 -20.076 -40.093 7.236 -4.567 -0.643 H36 X6S 78 X6S H37 H37 H 0 1 N N N 4.848 -20.146 -39.482 5.784 -4.530 1.368 H37 X6S 79 X6S H38 H38 H 0 1 N N N 2.594 -19.226 -39.640 4.292 -3.298 2.848 H38 X6S 80 X6S H39 H39 H 0 1 N N N 2.111 -17.247 -41.020 3.776 -0.932 2.431 H39 X6S 81 X6S H40 H40 H 0 1 N N N 5.753 -15.228 -45.108 3.412 2.457 -1.846 H40 X6S 82 X6S H41 H41 H 0 1 N N N 3.649 -19.814 -44.637 -3.065 -0.223 0.194 H41 X6S 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6S C17 C16 DOUB Y N 1 X6S C17 C18 SING Y N 2 X6S C16 C15 SING Y N 3 X6S C18 C19 DOUB Y N 4 X6S C15 C14 DOUB Y N 5 X6S C19 C14 SING Y N 6 X6S C14 C13 SING N N 7 X6S C13 C12 SING N N 8 X6S S11 C12 SING N N 9 X6S S11 C10 SING N N 10 X6S C12 C20 SING N N 11 X6S C01 C02 SING N N 12 X6S C04 C02 SING N N 13 X6S C20 O21 DOUB N N 14 X6S C20 N22 SING N N 15 X6S C02 C03 SING N N 16 X6S C02 O05 SING N N 17 X6S C10 C09 SING N N 18 X6S N08 C09 SING N N 19 X6S N08 C06 SING N N 20 X6S N22 C23 SING N N 21 X6S C09 C32 SING N N 22 X6S C06 O05 SING N N 23 X6S C06 O07 DOUB N N 24 X6S C24 C23 SING N N 25 X6S C24 C25 SING N N 26 X6S C25 C26 SING N N 27 X6S C32 C33 SING N N 28 X6S C27 C26 DOUB Y N 29 X6S C27 C28 SING Y N 30 X6S C35 C36 DOUB Y N 31 X6S C35 C34 SING Y N 32 X6S C36 C37 SING Y N 33 X6S C26 C31 SING Y N 34 X6S C33 C34 DOUB Y N 35 X6S C33 C42 SING Y N 36 X6S C34 C39 SING Y N 37 X6S C28 C29 DOUB Y N 38 X6S C37 C38 DOUB Y N 39 X6S C42 C41 DOUB Y N 40 X6S C39 C38 SING Y N 41 X6S C39 C40 DOUB Y N 42 X6S C31 N30 DOUB Y N 43 X6S C41 C40 SING Y N 44 X6S C29 N30 SING Y N 45 X6S C12 H1 SING N N 46 X6S C10 H2 SING N N 47 X6S C10 H3 SING N N 48 X6S C15 H4 SING N N 49 X6S C17 H5 SING N N 50 X6S C01 H6 SING N N 51 X6S C01 H7 SING N N 52 X6S C01 H8 SING N N 53 X6S C03 H9 SING N N 54 X6S C03 H10 SING N N 55 X6S C03 H11 SING N N 56 X6S C04 H12 SING N N 57 X6S C04 H13 SING N N 58 X6S C04 H14 SING N N 59 X6S C09 H15 SING N N 60 X6S C13 H16 SING N N 61 X6S C13 H17 SING N N 62 X6S C16 H18 SING N N 63 X6S C18 H19 SING N N 64 X6S C19 H20 SING N N 65 X6S C23 H21 SING N N 66 X6S C23 H22 SING N N 67 X6S C24 H23 SING N N 68 X6S C24 H24 SING N N 69 X6S C25 H25 SING N N 70 X6S C25 H26 SING N N 71 X6S C27 H27 SING N N 72 X6S C28 H28 SING N N 73 X6S C29 H29 SING N N 74 X6S C31 H30 SING N N 75 X6S C32 H31 SING N N 76 X6S C32 H32 SING N N 77 X6S C35 H33 SING N N 78 X6S C36 H34 SING N N 79 X6S C37 H35 SING N N 80 X6S C38 H36 SING N N 81 X6S C40 H37 SING N N 82 X6S C41 H38 SING N N 83 X6S C42 H39 SING N N 84 X6S N08 H40 SING N N 85 X6S N22 H41 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6S SMILES ACDLabs 12.01 "C(C(=O)NCCCc1cnccc1)(Cc2ccccc2)SCC(Cc4c3c(cccc3)ccc4)NC(OC(C)(C)C)=O" X6S InChI InChI 1.03 "InChI=1S/C35H41N3O3S/c1-35(2,3)41-34(40)38-30(23-29-18-9-17-28-16-7-8-19-31(28)29)25-42-32(22-26-12-5-4-6-13-26)33(39)37-21-11-15-27-14-10-20-36-24-27/h4-10,12-14,16-20,24,30,32H,11,15,21-23,25H2,1-3H3,(H,37,39)(H,38,40)/t30-,32+/m0/s1" X6S InChIKey InChI 1.03 XDOKSTKEPWQDPB-XDFJSJKPSA-N X6S SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@H](CS[C@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34" X6S SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3cccc4ccccc34" X6S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N[C@@H](Cc1cccc2c1cccc2)CS[C@H](Cc3ccccc3)C(=O)NCCCc4cccnc4" X6S SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC(Cc1cccc2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCCc4cccnc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6S "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" X6S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{S})-1-naphthalen-1-yl-3-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6S "Create component" 2020-12-01 RCSB X6S "Initial release" 2021-01-20 RCSB ##