data_X6V # _chem_comp.id X6V _chem_comp.name "tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H40 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-01 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 572.761 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X6V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KVN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X6V C12 C1 C 0 1 N N R 14.252 -18.091 10.660 1.087 -1.094 0.321 C12 X6V 1 X6V C13 C2 C 0 1 N N N 13.025 -18.552 9.828 1.269 -2.590 0.061 C13 X6V 2 X6V C14 C3 C 0 1 Y N N 13.048 -19.994 9.292 2.532 -2.812 -0.731 C14 X6V 3 X6V C15 C4 C 0 1 Y N N 12.343 -21.030 9.930 3.708 -3.135 -0.080 C15 X6V 4 X6V C16 C5 C 0 1 Y N N 12.366 -22.354 9.449 4.866 -3.338 -0.806 C16 X6V 5 X6V C17 C6 C 0 1 Y N N 13.108 -22.672 8.306 4.849 -3.218 -2.183 C17 X6V 6 X6V C18 C7 C 0 1 Y N N 13.820 -21.654 7.665 3.673 -2.895 -2.834 C18 X6V 7 X6V C01 C8 C 0 1 N N N 16.819 -18.278 4.539 -4.629 3.111 -1.980 C01 X6V 8 X6V C02 C9 C 0 1 N N N 16.866 -16.814 5.063 -3.624 3.471 -0.885 C02 X6V 9 X6V C03 C10 C 0 1 N N N 18.099 -16.139 4.424 -2.214 3.508 -1.479 C03 X6V 10 X6V C04 C11 C 0 1 N N N 15.566 -16.105 4.664 -3.969 4.845 -0.307 C04 X6V 11 X6V C06 C12 C 0 1 N N N 16.565 -15.744 7.296 -3.398 1.204 -0.175 C06 X6V 12 X6V C09 C13 C 0 1 N N S 16.202 -15.725 9.867 -3.126 -1.153 0.381 C09 X6V 13 X6V C10 C14 C 0 1 N N N 15.069 -15.130 10.807 -1.705 -1.227 -0.181 C10 X6V 14 X6V C19 C15 C 0 1 Y N N 13.787 -20.339 8.158 2.513 -2.698 -2.108 C19 X6V 15 X6V C20 C16 C 0 1 N N N 14.776 -19.115 11.667 2.192 -0.602 1.220 C20 X6V 16 X6V C23 C17 C 0 1 N N N 16.390 -20.906 12.470 4.451 0.244 1.564 C23 X6V 17 X6V C24 C18 C 0 1 N N N 15.735 -22.260 12.063 5.678 0.593 0.719 C24 X6V 18 X6V C25 C19 C 0 1 N N N 16.536 -23.538 12.395 6.800 1.092 1.631 C25 X6V 19 X6V C26 C20 C 0 1 Y N N 18.040 -23.486 12.163 8.008 1.436 0.799 C26 X6V 20 X6V C27 C21 C 0 1 Y N N 18.609 -23.215 10.907 8.969 0.475 0.525 C27 X6V 21 X6V C28 C22 C 0 1 Y N N 20.010 -23.172 10.746 10.064 0.836 -0.245 C28 X6V 22 X6V C29 C23 C 0 1 Y N N 20.830 -23.404 11.866 10.160 2.134 -0.712 C29 X6V 23 X6V C31 C24 C 0 1 Y N N 18.947 -23.701 13.218 8.169 2.712 0.293 C31 X6V 24 X6V C32 C25 C 0 1 N N N 17.556 -14.927 10.015 -4.120 -1.624 -0.682 C32 X6V 25 X6V C33 C26 C 0 1 Y N N 18.807 -15.671 9.763 -5.505 -1.668 -0.090 C33 X6V 26 X6V C34 C27 C 0 1 Y N N 19.583 -15.528 8.573 -6.110 -2.739 0.448 C34 X6V 27 X6V C36 C28 C 0 1 Y N N 20.671 -17.047 9.841 -7.598 -1.065 0.632 C36 X6V 28 X6V C37 C29 C 0 1 Y N N 19.557 -16.656 10.531 -6.444 -0.548 0.014 C37 X6V 29 X6V C38 C30 C 0 1 Y N N 19.247 -17.179 11.802 -6.395 0.797 -0.356 C38 X6V 30 X6V C39 C31 C 0 1 Y N N 20.147 -18.127 12.323 -7.470 1.606 -0.115 C39 X6V 31 X6V C40 C32 C 0 1 Y N N 21.280 -18.526 11.624 -8.610 1.102 0.494 C40 X6V 32 X6V C41 C33 C 0 1 Y N N 21.590 -18.010 10.365 -8.680 -0.223 0.868 C41 X6V 33 X6V N08 N1 N 0 1 N N N 15.740 -15.835 8.440 -3.431 0.230 0.756 N08 X6V 34 X6V N22 N2 N 0 1 N N N 16.029 -19.745 11.640 3.376 -0.234 0.691 N22 X6V 35 X6V N30 N3 N 0 1 Y N N 20.294 -23.664 13.080 9.227 3.022 -0.432 N30 X6V 36 X6V N35 N4 N 0 1 Y N N 20.689 -16.380 8.678 -7.362 -2.398 0.883 N35 X6V 37 X6V O05 O1 O 0 1 N N N 16.914 -16.840 6.516 -3.678 2.475 0.170 O05 X6V 38 X6V O07 O2 O 0 1 N N N 17.031 -14.633 6.950 -3.115 0.935 -1.326 O07 X6V 39 X6V O21 O3 O 0 1 N N N 14.013 -19.453 12.607 2.016 -0.537 2.418 O21 X6V 40 X6V S11 S1 S 0 1 N N N 13.975 -16.456 11.512 -0.516 -0.810 1.124 S11 X6V 41 X6V H1 H1 H 0 1 N N N 15.065 -17.888 9.948 1.120 -0.553 -0.625 H1 X6V 42 X6V H2 H2 H 0 1 N N N 12.938 -17.878 8.963 1.338 -3.119 1.012 H2 X6V 43 X6V H3 H3 H 0 1 N N N 12.134 -18.449 10.465 0.415 -2.967 -0.503 H3 X6V 44 X6V H4 H4 H 0 1 N N N 11.767 -20.804 10.815 3.721 -3.229 0.996 H4 X6V 45 X6V H5 H5 H 0 1 N N N 11.810 -23.124 9.963 5.785 -3.591 -0.298 H5 X6V 46 X6V H6 H6 H 0 1 N N N 13.130 -23.683 7.927 5.754 -3.377 -2.751 H6 X6V 47 X6V H7 H7 H 0 1 N N N 14.401 -21.881 6.783 3.658 -2.806 -3.910 H7 X6V 48 X6V H8 H8 H 0 1 N N N 15.951 -18.796 4.973 -5.634 3.085 -1.556 H8 X6V 49 X6V H9 H9 H 0 1 N N N 16.732 -18.272 3.442 -4.588 3.859 -2.772 H9 X6V 50 X6V H10 H10 H 0 1 N N N 17.741 -18.802 4.831 -4.383 2.132 -2.392 H10 X6V 51 X6V H11 H11 H 0 1 N N N 18.168 -15.097 4.771 -2.173 4.256 -2.271 H11 X6V 52 X6V H12 H12 H 0 1 N N N 19.008 -16.684 4.717 -1.497 3.765 -0.699 H12 X6V 53 X6V H13 H13 H 0 1 N N N 17.999 -16.155 3.329 -1.968 2.529 -1.891 H13 X6V 54 X6V H14 H14 H 0 1 N N N 14.712 -16.612 5.136 -4.973 4.819 0.116 H14 X6V 55 X6V H15 H15 H 0 1 N N N 15.602 -15.058 4.999 -3.252 5.102 0.473 H15 X6V 56 X6V H16 H16 H 0 1 N N N 15.452 -16.136 3.570 -3.928 5.593 -1.099 H16 X6V 57 X6V H17 H17 H 0 1 N N N 16.400 -16.745 10.227 -3.203 -1.793 1.260 H17 X6V 58 X6V H18 H18 H 0 1 N N N 15.546 -14.586 11.636 -1.509 -2.237 -0.542 H18 X6V 59 X6V H19 H19 H 0 1 N N N 14.450 -14.435 10.220 -1.603 -0.521 -1.005 H19 X6V 60 X6V H20 H20 H 0 1 N N N 14.349 -19.573 7.645 1.594 -2.446 -2.617 H20 X6V 61 X6V H21 H21 H 0 1 N N N 17.482 -21.031 12.420 4.713 -0.536 2.279 H21 X6V 62 X6V H22 H22 H 0 1 N N N 16.093 -20.686 13.506 4.115 1.131 2.101 H22 X6V 63 X6V H23 H23 H 0 1 N N N 15.573 -22.240 10.975 6.013 -0.294 0.182 H23 X6V 64 X6V H24 H24 H 0 1 N N N 14.765 -22.330 12.577 5.416 1.373 0.004 H24 X6V 65 X6V H25 H25 H 0 1 N N N 16.371 -23.767 13.458 6.464 1.980 2.168 H25 X6V 66 X6V H26 H26 H 0 1 N N N 16.132 -24.354 11.777 7.062 0.312 2.346 H26 X6V 67 X6V H27 H27 H 0 1 N N N 17.967 -23.038 10.056 8.868 -0.531 0.904 H27 X6V 68 X6V H28 H28 H 0 1 N N N 20.446 -22.965 9.780 10.832 0.113 -0.477 H28 X6V 69 X6V H29 H29 H 0 1 N N N 21.904 -23.374 11.754 11.009 2.423 -1.313 H29 X6V 70 X6V H30 H30 H 0 1 N N N 18.544 -23.908 14.198 7.423 3.466 0.497 H30 X6V 71 X6V H31 H31 H 0 1 N N N 17.602 -14.540 11.044 -4.107 -0.932 -1.524 H31 X6V 72 X6V H32 H32 H 0 1 N N N 17.523 -14.085 9.308 -3.840 -2.620 -1.025 H32 X6V 73 X6V H33 H33 H 0 1 N N N 19.357 -14.878 7.740 -5.673 -3.723 0.526 H33 X6V 74 X6V H34 H34 H 0 1 N N N 18.367 -16.869 12.346 -5.511 1.196 -0.830 H34 X6V 75 X6V H35 H35 H 0 1 N N N 19.952 -18.557 13.294 -7.431 2.647 -0.401 H35 X6V 76 X6V H36 H36 H 0 1 N N N 21.940 -19.257 12.068 -9.451 1.754 0.678 H36 X6V 77 X6V H37 H37 H 0 1 N N N 22.470 -18.319 9.820 -9.572 -0.606 1.341 H37 X6V 78 X6V H38 H38 H 0 1 N N N 14.763 -15.986 8.287 -3.657 0.445 1.675 H38 X6V 79 X6V H39 H39 H 0 1 N N N 16.722 -19.382 11.017 3.517 -0.286 -0.267 H39 X6V 80 X6V H40 H40 H 0 1 N N N 21.398 -16.478 7.979 -7.989 -3.005 1.307 H40 X6V 81 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X6V C03 C02 SING N N 1 X6V C01 C02 SING N N 2 X6V C04 C02 SING N N 3 X6V C02 O05 SING N N 4 X6V O05 C06 SING N N 5 X6V O07 C06 DOUB N N 6 X6V C06 N08 SING N N 7 X6V C18 C19 DOUB Y N 8 X6V C18 C17 SING Y N 9 X6V C19 C14 SING Y N 10 X6V C17 C16 DOUB Y N 11 X6V N08 C09 SING N N 12 X6V C34 N35 SING Y N 13 X6V C34 C33 DOUB Y N 14 X6V N35 C36 SING Y N 15 X6V C14 C13 SING N N 16 X6V C14 C15 DOUB Y N 17 X6V C16 C15 SING Y N 18 X6V C33 C32 SING N N 19 X6V C33 C37 SING Y N 20 X6V C13 C12 SING N N 21 X6V C36 C41 DOUB Y N 22 X6V C36 C37 SING Y N 23 X6V C09 C32 SING N N 24 X6V C09 C10 SING N N 25 X6V C41 C40 SING Y N 26 X6V C37 C38 DOUB Y N 27 X6V C12 S11 SING N N 28 X6V C12 C20 SING N N 29 X6V C28 C27 DOUB Y N 30 X6V C28 C29 SING Y N 31 X6V C10 S11 SING N N 32 X6V C27 C26 SING Y N 33 X6V C40 C39 DOUB Y N 34 X6V N22 C20 SING N N 35 X6V N22 C23 SING N N 36 X6V C20 O21 DOUB N N 37 X6V C38 C39 SING Y N 38 X6V C29 N30 DOUB Y N 39 X6V C24 C25 SING N N 40 X6V C24 C23 SING N N 41 X6V C26 C25 SING N N 42 X6V C26 C31 DOUB Y N 43 X6V N30 C31 SING Y N 44 X6V C12 H1 SING N N 45 X6V C13 H2 SING N N 46 X6V C13 H3 SING N N 47 X6V C15 H4 SING N N 48 X6V C16 H5 SING N N 49 X6V C17 H6 SING N N 50 X6V C18 H7 SING N N 51 X6V C01 H8 SING N N 52 X6V C01 H9 SING N N 53 X6V C01 H10 SING N N 54 X6V C03 H11 SING N N 55 X6V C03 H12 SING N N 56 X6V C03 H13 SING N N 57 X6V C04 H14 SING N N 58 X6V C04 H15 SING N N 59 X6V C04 H16 SING N N 60 X6V C09 H17 SING N N 61 X6V C10 H18 SING N N 62 X6V C10 H19 SING N N 63 X6V C19 H20 SING N N 64 X6V C23 H21 SING N N 65 X6V C23 H22 SING N N 66 X6V C24 H23 SING N N 67 X6V C24 H24 SING N N 68 X6V C25 H25 SING N N 69 X6V C25 H26 SING N N 70 X6V C27 H27 SING N N 71 X6V C28 H28 SING N N 72 X6V C29 H29 SING N N 73 X6V C31 H30 SING N N 74 X6V C32 H31 SING N N 75 X6V C32 H32 SING N N 76 X6V C34 H33 SING N N 77 X6V C38 H34 SING N N 78 X6V C39 H35 SING N N 79 X6V C40 H36 SING N N 80 X6V C41 H37 SING N N 81 X6V N08 H38 SING N N 82 X6V N22 H39 SING N N 83 X6V N35 H40 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X6V SMILES ACDLabs 12.01 "C(SCC(Cc2c1c(cccc1)nc2)NC(OC(C)(C)C)=O)(C(=O)NCCCc3cnccc3)Cc4ccccc4" X6V InChI InChI 1.03 "InChI=1S/C33H40N4O3S/c1-33(2,3)40-32(39)37-27(20-26-22-36-29-16-8-7-15-28(26)29)23-41-30(19-24-11-5-4-6-12-24)31(38)35-18-10-14-25-13-9-17-34-21-25/h4-9,11-13,15-17,21-22,27,30,36H,10,14,18-20,23H2,1-3H3,(H,35,38)(H,37,39)/t27-,30+/m0/s1" X6V InChIKey InChI 1.03 UPIUQMILMIDZJI-BHBYDHKZSA-N X6V SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N[C@H](CS[C@H](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3c[nH]c4ccccc34" X6V SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N[CH](CS[CH](Cc1ccccc1)C(=O)NCCCc2cccnc2)Cc3c[nH]c4ccccc34" X6V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N[C@@H](Cc1c[nH]c2c1cccc2)CS[C@H](Cc3ccccc3)C(=O)NCCCc4cccnc4" X6V SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC(Cc1c[nH]c2c1cccc2)CSC(Cc3ccccc3)C(=O)NCCCc4cccnc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X6V "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]carbamate" X6V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl ~{N}-[(2~{S})-1-(1~{H}-indol-3-yl)-3-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X6V "Create component" 2020-12-01 RCSB X6V "Initial release" 2021-01-20 RCSB ##