data_X97 # _chem_comp.id X97 _chem_comp.name "3-{4-oxo-4-[(2S)-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]butyl}-5,5-diphenylimidazolidine-2,4-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-16 _chem_comp.pdbx_modified_date 2012-01-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X97 _chem_comp.pdbx_model_coordinates_details "not provided" _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EQ9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X97 C C1 C 0 1 N N N 6.744 38.168 30.722 -2.678 0.902 0.429 C X97 1 X97 O O1 O 0 1 N N N 7.182 38.056 29.573 -2.536 -0.302 0.396 O X97 2 X97 C1 C2 C 0 1 N N N 7.694 38.263 31.895 -1.496 1.806 0.190 C1 X97 3 X97 C2 C3 C 0 1 N N N 9.081 38.568 31.366 -0.249 0.959 -0.068 C2 X97 4 X97 C3 C4 C 0 1 N N N 10.152 38.619 32.450 0.951 1.877 -0.310 C3 X97 5 X97 N4 N1 N 0 1 N N N 10.156 37.505 33.337 2.145 1.065 -0.557 N4 X97 6 X97 C5 C5 C 0 1 N N N 10.602 36.199 32.998 2.536 0.653 -1.768 C5 X97 7 X97 N6 N2 N 0 1 N N N 10.401 35.348 34.098 3.665 -0.077 -1.722 N6 X97 8 X97 C7 C6 C 0 1 N N N 9.793 36.070 35.232 4.062 -0.152 -0.306 C7 X97 9 X97 C8 C7 C 0 1 N N N 9.668 37.538 34.635 2.989 0.647 0.407 C8 X97 10 X97 O9 O2 O 0 1 N N N 11.064 35.851 31.901 1.938 0.909 -2.795 O9 X97 11 X97 O10 O3 O 0 1 N N N 9.262 38.558 35.195 2.905 0.863 1.597 O10 X97 12 X97 C11 C8 C 0 1 Y N N 8.416 35.486 35.550 4.068 -1.582 0.169 C11 X97 13 X97 C12 C9 C 0 1 Y N N 8.288 34.111 35.835 4.047 -1.861 1.523 C12 X97 14 X97 C13 C10 C 0 1 Y N N 7.028 33.553 36.079 4.052 -3.173 1.958 C13 X97 15 X97 C14 C11 C 0 1 Y N N 5.882 34.358 36.043 4.078 -4.206 1.039 C14 X97 16 X97 C15 C12 C 0 1 Y N N 5.999 35.725 35.764 4.097 -3.927 -0.315 C15 X97 17 X97 C16 C13 C 0 1 Y N N 7.258 36.290 35.519 4.088 -2.615 -0.750 C16 X97 18 X97 C17 C14 C 0 1 Y N N 10.654 36.064 36.492 5.413 0.482 -0.100 C17 X97 19 X97 C18 C15 C 0 1 Y N N 11.964 35.549 36.456 6.222 0.756 -1.187 C18 X97 20 X97 C19 C16 C 0 1 Y N N 12.750 35.534 37.616 7.461 1.337 -0.998 C19 X97 21 X97 C20 C17 C 0 1 Y N N 12.240 36.030 38.821 7.893 1.645 0.279 C20 X97 22 X97 C21 C18 C 0 1 Y N N 10.937 36.545 38.863 7.084 1.373 1.366 C21 X97 23 X97 C22 C19 C 0 1 Y N N 10.145 36.563 37.707 5.843 0.795 1.177 C22 X97 24 X97 N N3 N 0 1 N N N 5.436 38.027 31.004 -3.893 1.431 0.674 N X97 25 X97 CA C20 C 0 1 N N S 4.411 37.776 29.978 -5.126 0.669 0.917 CA X97 26 X97 C4 C21 C 0 1 N N N 4.294 38.911 28.961 -5.431 -0.206 -0.272 C4 X97 27 X97 O1 O5 O 0 1 N N N 4.591 40.065 29.268 -4.693 -0.200 -1.234 O1 X97 28 X97 CB C22 C 0 1 N N N 3.121 37.588 30.785 -6.264 1.691 1.121 CB X97 29 X97 CG C23 C 0 1 N N N 3.394 38.239 32.101 -5.718 2.964 0.421 CG X97 30 X97 CD C24 C 0 1 N N N 4.859 38.086 32.359 -4.204 2.870 0.748 CD X97 31 X97 N1 N4 N 0 1 N N N 3.841 38.600 27.736 -6.523 -0.996 -0.265 N1 X97 32 X97 CD1 C25 C 0 1 N N N 3.754 39.604 26.656 -6.937 -1.895 -1.352 CD1 X97 33 X97 CA1 C26 C 0 1 N N N 3.440 37.268 27.273 -7.497 -1.106 0.836 CA1 X97 34 X97 CB1 C27 C 0 1 N N N 2.864 37.547 25.879 -8.803 -1.595 0.163 CB1 X97 35 X97 CG1 C28 C 0 1 N N N 3.588 38.767 25.415 -8.252 -2.572 -0.911 CG1 X97 36 X97 H1 H1 H 0 1 N N N 7.369 39.065 32.574 -1.691 2.438 -0.676 H1 X97 37 X97 H1A H2 H 0 1 N N N 7.706 37.310 32.443 -1.335 2.433 1.068 H1A X97 38 X97 H2 H3 H 0 1 N N N 9.355 37.778 30.651 -0.054 0.327 0.799 H2 X97 39 X97 H2A H4 H 0 1 N N N 9.049 39.550 30.870 -0.410 0.333 -0.945 H2A X97 40 X97 H3 H5 H 0 1 N N N 11.132 38.654 31.952 0.755 2.509 -1.176 H3 X97 41 X97 H3A H6 H 0 1 N N N 9.979 39.525 33.050 1.112 2.503 0.568 H3A X97 42 X97 HN6 H7 H 0 1 N N N 10.640 34.377 34.111 4.128 -0.477 -2.476 HN6 X97 43 X97 H12 H8 H 0 1 N N N 9.167 33.485 35.865 4.027 -1.054 2.240 H12 X97 44 X97 H13 H9 H 0 1 N N N 6.939 32.499 36.296 4.037 -3.391 3.015 H13 X97 45 X97 H14 H10 H 0 1 N N N 4.910 33.925 36.230 4.082 -5.231 1.379 H14 X97 46 X97 H15 H11 H 0 1 N N N 5.116 36.346 35.737 4.118 -4.734 -1.032 H15 X97 47 X97 H16 H12 H 0 1 N N N 7.342 37.345 35.306 4.099 -2.397 -1.807 H16 X97 48 X97 H18 H13 H 0 1 N N N 12.365 35.164 35.530 5.885 0.515 -2.184 H18 X97 49 X97 H19 H14 H 0 1 N N N 13.754 35.138 37.580 8.093 1.550 -1.847 H19 X97 50 X97 H20 H15 H 0 1 N N N 12.847 36.016 39.714 8.862 2.099 0.427 H20 X97 51 X97 H21 H16 H 0 1 N N N 10.541 36.930 39.791 7.421 1.613 2.364 H21 X97 52 X97 H22 H17 H 0 1 N N N 9.142 36.961 37.748 5.209 0.586 2.026 H22 X97 53 X97 HA H20 H 0 1 N N N 4.656 36.900 29.360 -5.012 0.054 1.810 HA X97 54 X97 HB2 H21 H 0 1 N N N 2.267 38.062 30.280 -7.181 1.350 0.640 HB2 X97 55 X97 HB3 H22 H 0 1 N N N 2.888 36.521 30.913 -6.430 1.876 2.182 HB3 X97 56 X97 HG2 H23 H 0 1 N N N 3.119 39.304 32.067 -5.892 2.923 -0.654 HG2 X97 57 X97 HG3 H24 H 0 1 N N N 2.811 37.753 32.898 -6.154 3.865 0.852 HG3 X97 58 X97 HD2 H25 H 0 1 N N N 5.076 37.172 32.932 -4.006 3.250 1.750 HD2 X97 59 X97 HD3 H26 H 0 1 N N N 5.260 38.934 32.933 -3.622 3.423 0.010 HD3 X97 60 X97 HD H29 H 0 1 N N N 2.901 40.283 26.803 -7.103 -1.321 -2.264 HD X97 61 X97 HDA H30 H 0 1 N N N 4.661 40.224 26.607 -6.169 -2.650 -1.521 HDA X97 62 X97 HA1 H31 H 0 1 N N N 4.296 36.578 27.229 -7.155 -1.833 1.574 HA1 X97 63 X97 HAA H32 H 0 1 N N N 2.691 36.814 27.939 -7.652 -0.134 1.304 HAA X97 64 X97 HB H33 H 0 1 N N N 3.038 36.699 25.200 -9.438 -2.120 0.877 HB X97 65 X97 HBA H34 H 0 1 N N N 1.779 37.722 25.925 -9.339 -0.766 -0.298 HBA X97 66 X97 HG H35 H 0 1 N N N 3.010 39.304 24.649 -8.943 -2.656 -1.750 HG X97 67 X97 HGA H36 H 0 1 N N N 4.564 38.507 24.978 -8.054 -3.550 -0.474 HGA X97 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X97 C O DOUB N N 1 X97 C C1 SING N N 2 X97 C1 C2 SING N N 3 X97 C2 C3 SING N N 4 X97 C3 N4 SING N N 5 X97 N4 C5 SING N N 6 X97 N4 C8 SING N N 7 X97 C5 N6 SING N N 8 X97 C5 O9 DOUB N N 9 X97 N6 C7 SING N N 10 X97 C7 C8 SING N N 11 X97 C7 C11 SING N N 12 X97 C7 C17 SING N N 13 X97 C8 O10 DOUB N N 14 X97 C11 C12 DOUB Y N 15 X97 C11 C16 SING Y N 16 X97 C12 C13 SING Y N 17 X97 C13 C14 DOUB Y N 18 X97 C14 C15 SING Y N 19 X97 C15 C16 DOUB Y N 20 X97 C17 C18 DOUB Y N 21 X97 C17 C22 SING Y N 22 X97 C18 C19 SING Y N 23 X97 C19 C20 DOUB Y N 24 X97 C20 C21 SING Y N 25 X97 C21 C22 DOUB Y N 26 X97 C1 H1 SING N N 27 X97 C1 H1A SING N N 28 X97 C2 H2 SING N N 29 X97 C2 H2A SING N N 30 X97 C3 H3 SING N N 31 X97 C3 H3A SING N N 32 X97 N6 HN6 SING N N 33 X97 C12 H12 SING N N 34 X97 C13 H13 SING N N 35 X97 C14 H14 SING N N 36 X97 C15 H15 SING N N 37 X97 C16 H16 SING N N 38 X97 C18 H18 SING N N 39 X97 C19 H19 SING N N 40 X97 C20 H20 SING N N 41 X97 C21 H21 SING N N 42 X97 C22 H22 SING N N 43 X97 N CA SING N N 44 X97 N CD SING N N 45 X97 CA C4 SING N N 46 X97 CA CB SING N N 47 X97 CA HA SING N N 48 X97 C4 O1 DOUB N N 49 X97 CB CG SING N N 50 X97 CB HB2 SING N N 51 X97 CB HB3 SING N N 52 X97 CG CD SING N N 53 X97 CG HG2 SING N N 54 X97 CG HG3 SING N N 55 X97 CD HD2 SING N N 56 X97 CD HD3 SING N N 57 X97 N1 CD1 SING N N 58 X97 N1 CA1 SING N N 59 X97 CD1 CG1 SING N N 60 X97 CA1 CB1 SING N N 61 X97 CB1 CG1 SING N N 62 X97 CD1 HD SING N N 63 X97 CD1 HDA SING N N 64 X97 CA1 HA1 SING N N 65 X97 CA1 HAA SING N N 66 X97 CB1 HB SING N N 67 X97 CB1 HBA SING N N 68 X97 CG1 HG SING N N 69 X97 CG1 HGA SING N N 70 X97 C N SING N N 71 X97 C4 N1 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X97 SMILES ACDLabs 12.01 "O=C(N1CCCC1)C5N(C(=O)CCCN4C(=O)C(c2ccccc2)(c3ccccc3)NC4=O)CCC5" X97 SMILES_CANONICAL CACTVS 3.370 "O=C(CCCN1C(=O)NC(C1=O)(c2ccccc2)c3ccccc3)N4CCC[C@H]4C(=O)N5CCCC5" X97 SMILES CACTVS 3.370 "O=C(CCCN1C(=O)NC(C1=O)(c2ccccc2)c3ccccc3)N4CCC[CH]4C(=O)N5CCCC5" X97 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C2(C(=O)N(C(=O)N2)CCCC(=O)N3CCC[C@H]3C(=O)N4CCCC4)c5ccccc5" X97 SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C2(C(=O)N(C(=O)N2)CCCC(=O)N3CCCC3C(=O)N4CCCC4)c5ccccc5" X97 InChI InChI 1.03 "InChI=1S/C28H32N4O4/c33-24(31-19-9-15-23(31)25(34)30-17-7-8-18-30)16-10-20-32-26(35)28(29-27(32)36,21-11-3-1-4-12-21)22-13-5-2-6-14-22/h1-6,11-14,23H,7-10,15-20H2,(H,29,36)/t23-/m0/s1" X97 InChIKey InChI 1.03 PHYVMRFCTLZIHY-QHCPKHFHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X97 "SYSTEMATIC NAME" ACDLabs 12.01 "3-{4-oxo-4-[(2S)-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]butyl}-5,5-diphenylimidazolidine-2,4-dione" X97 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "3-[4-oxo-4-[(2S)-2-pyrrolidin-1-ylcarbonylpyrrolidin-1-yl]butyl]-5,5-diphenyl-imidazolidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X97 "Create component" 2008-10-16 PDBJ X97 "Modify aromatic_flag" 2011-06-04 RCSB X97 "Modify descriptor" 2011-06-04 RCSB X97 "Modify subcomponent list" 2012-01-11 RCSB #