data_X9H # _chem_comp.id X9H _chem_comp.name "N-[(5P,8S,10R)-4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H20 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-07 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 396.445 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X9H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F1H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X9H C01 C1 C 0 1 N N N N N N 50.534 3.142 -24.519 -0.023 -1.972 1.978 C01 X9H 1 X9H C02 C2 C 0 1 N N N N N N 50.677 2.914 -22.936 -1.109 -1.038 1.509 C02 X9H 2 X9H C03 C3 C 0 1 N N N N N N 49.717 3.357 -22.040 -2.401 -1.366 1.605 C03 X9H 3 X9H C04 C4 C 0 1 N N S N N N 50.032 3.557 -20.527 -3.489 -0.469 1.092 C04 X9H 4 X9H C06 C5 C 0 1 N N N N N N 50.028 5.981 -19.680 -4.530 -1.758 -0.694 C06 X9H 5 X9H C07 C6 C 0 1 N N N N N N 50.649 7.341 -19.351 -4.750 -2.045 -2.120 C07 X9H 6 X9H C08 C7 C 0 1 N N N N N N 51.973 7.592 -19.442 -5.561 -3.036 -2.482 C08 X9H 7 X9H C10 C8 C 0 1 N N N N N N 50.920 2.285 -20.028 -3.153 1.012 1.251 C10 X9H 8 X9H C12 C9 C 0 1 Y N N N N N 51.717 1.801 -22.518 -0.796 0.278 0.931 C12 X9H 9 X9H C13 C10 C 0 1 Y N N N N N 52.651 0.934 -23.175 0.401 0.763 0.461 C13 X9H 10 X9H C14 C11 C 0 1 Y N N N N N 52.953 0.816 -24.688 1.701 0.058 0.441 C14 X9H 11 X9H C15 C12 C 0 1 Y N N N N N 52.691 -0.354 -25.415 2.306 -0.262 -0.768 C15 X9H 12 X9H C16 C13 C 0 1 Y N N N N N 52.953 -0.516 -26.846 3.541 -0.931 -0.731 C16 X9H 13 X9H C17 C14 C 0 1 Y N N N N N 52.671 -1.759 -27.581 4.213 -1.288 -1.913 C17 X9H 14 X9H C18 C15 C 0 1 Y N N N N N 52.944 -1.878 -28.943 5.408 -1.935 -1.839 C18 X9H 15 X9H C19 C16 C 0 1 Y N N N N N 53.515 -0.748 -29.672 5.975 -2.249 -0.605 C19 X9H 16 X9H C20 C17 C 0 1 Y N N N N N 53.792 0.446 -29.001 5.352 -1.919 0.559 C20 X9H 17 X9H C21 C18 C 0 1 Y N N N N N 53.518 0.607 -27.542 4.116 -1.250 0.525 C21 X9H 18 X9H C23 C19 C 0 1 Y N N N N N 53.534 1.923 -25.484 2.339 -0.287 1.646 C23 X9H 19 X9H C24 C20 C 0 1 Y N N N N N 53.327 0.093 -22.139 0.127 2.113 -0.013 C24 X9H 20 X9H C25 C21 C 0 1 Y N N N N N 54.369 -0.979 -22.143 0.935 3.101 -0.598 C25 X9H 21 X9H C28 C22 C 0 1 Y N N N N N 54.152 -1.080 -19.745 -0.975 4.427 -0.687 C28 X9H 22 X9H C30 C23 C 0 1 Y N N N N N 52.779 0.487 -20.866 -1.253 2.355 0.213 C30 X9H 23 X9H N05 N1 N 0 1 N N N N N N 50.739 4.854 -20.232 -3.708 -0.755 -0.328 N05 X9H 24 X9H N11 N2 N 0 1 Y N N N N N 51.795 1.534 -21.083 -1.780 1.251 0.783 N11 X9H 25 X9H N22 N3 N 0 1 Y N N N N N 53.792 1.827 -26.810 3.486 -0.915 1.657 N22 X9H 26 X9H N26 N4 N 0 1 N N N N N N 54.978 -1.435 -23.360 2.284 2.908 -0.833 N26 X9H 27 X9H N27 N5 N 0 1 Y N N N N N 54.753 -1.541 -20.923 0.310 4.241 -0.911 N27 X9H 28 X9H N29 N6 N 0 1 Y N N N N N 53.197 -0.106 -19.660 -1.779 3.532 -0.139 N29 X9H 29 X9H O09 O1 O 0 1 N N N N N N 48.826 5.894 -19.433 -5.089 -2.427 0.154 O09 X9H 30 X9H H1 H1 H 0 1 N N N N N N 49.792 3.931 -24.711 0.197 -1.775 3.027 H1 X9H 31 X9H H2 H2 H 0 1 N N N N N N 51.506 3.444 -24.935 -0.355 -3.003 1.863 H2 X9H 32 X9H H3 H3 H 0 1 N N N N N N 50.206 2.207 -24.996 0.876 -1.811 1.382 H3 X9H 33 X9H H5 H5 H 0 1 N N N N N N 48.722 3.570 -22.401 -2.670 -2.305 2.065 H5 X9H 34 X9H H7 H7 H 0 1 N N N N N N 49.083 3.534 -19.972 -4.407 -0.681 1.640 H7 X9H 35 X9H H8 H8 H 0 1 N N N N N N 49.996 8.139 -19.030 -4.253 -1.452 -2.873 H8 X9H 36 X9H H9 H9 H 0 1 N N N N N N 52.355 8.572 -19.197 -5.723 -3.246 -3.529 H9 X9H 37 X9H H10 H10 H 0 1 N N N N N N 52.650 6.813 -19.760 -6.058 -3.629 -1.728 H10 X9H 38 X9H H11 H11 H 0 1 N N N N N N 50.223 1.549 -19.599 -3.848 1.609 0.660 H11 X9H 39 X9H H12 H12 H 0 1 N N N N N N 51.598 2.649 -19.242 -3.235 1.293 2.301 H12 X9H 40 X9H H13 H13 H 0 1 N N N N N N 52.267 -1.193 -24.883 1.840 -0.005 -1.708 H13 X9H 41 X9H H14 H14 H 0 1 N N N N N N 52.243 -2.598 -27.053 3.783 -1.050 -2.875 H14 X9H 42 X9H H15 H15 H 0 1 N N N N N N 52.734 -2.804 -29.458 5.923 -2.209 -2.747 H15 X9H 43 X9H H16 H16 H 0 1 N N N N N N 53.723 -0.835 -30.728 6.924 -2.763 -0.572 H16 X9H 44 X9H H17 H17 H 0 1 N N N N N N 54.215 1.273 -29.552 5.805 -2.170 1.507 H17 X9H 45 X9H H18 H18 H 0 1 N N N N N N 53.763 2.852 -24.982 1.868 -0.032 2.584 H18 X9H 46 X9H H19 H19 H 0 1 N N N N N N 54.472 -1.536 -18.820 -1.401 5.378 -0.971 H19 X9H 47 X9H H20 H20 H 0 1 N N N N N N 51.717 4.935 -20.422 -3.262 -0.222 -1.005 H20 X9H 48 X9H H21 H21 H 0 1 N N N N N N 55.647 -2.149 -23.152 2.703 2.067 -0.593 H21 X9H 49 X9H H22 H22 H 0 1 N N N N N N 54.274 -1.804 -23.967 2.811 3.614 -1.239 H22 X9H 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X9H C19 C20 DOUB Y N 1 X9H C19 C18 SING Y N 2 X9H C20 C21 SING Y N 3 X9H C18 C17 DOUB Y N 4 X9H C17 C16 SING Y N 5 X9H C21 C16 DOUB Y N 6 X9H C21 N22 SING Y N 7 X9H C16 C15 SING Y N 8 X9H N22 C23 DOUB Y N 9 X9H C23 C14 SING Y N 10 X9H C15 C14 DOUB Y N 11 X9H C14 C13 SING N N 12 X9H C01 C02 SING N N 13 X9H N26 C25 SING N N 14 X9H C13 C12 DOUB Y N 15 X9H C13 C24 SING Y N 16 X9H C02 C12 SING N N 17 X9H C02 C03 DOUB N N 18 X9H C12 N11 SING Y N 19 X9H C25 C24 DOUB Y N 20 X9H C25 N27 SING Y N 21 X9H C24 C30 SING Y N 22 X9H C03 C04 SING N N 23 X9H N11 C30 SING Y N 24 X9H N11 C10 SING N N 25 X9H N27 C28 DOUB Y N 26 X9H C30 N29 DOUB Y N 27 X9H C04 N05 SING N N 28 X9H C04 C10 SING N N 29 X9H N05 C06 SING N N 30 X9H C28 N29 SING Y N 31 X9H C06 O09 DOUB N N 32 X9H C06 C07 SING N N 33 X9H C08 C07 DOUB N N 34 X9H C01 H1 SING N N 35 X9H C01 H2 SING N N 36 X9H C01 H3 SING N N 37 X9H C03 H5 SING N N 38 X9H C04 H7 SING N N 39 X9H C07 H8 SING N N 40 X9H C08 H9 SING N N 41 X9H C08 H10 SING N N 42 X9H C10 H11 SING N N 43 X9H C10 H12 SING N N 44 X9H C15 H13 SING N N 45 X9H C17 H14 SING N N 46 X9H C18 H15 SING N N 47 X9H C19 H16 SING N N 48 X9H C20 H17 SING N N 49 X9H C23 H18 SING N N 50 X9H C28 H19 SING N N 51 X9H N05 H20 SING N N 52 X9H N26 H21 SING N N 53 X9H N26 H22 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X9H SMILES ACDLabs 12.01 "C=CC(=O)NC1C=C(C)c2c(c3c(ncnc3N)n2C1)c1cc2ccccc2nc1" X9H InChI InChI 1.06 "InChI=1S/C23H20N6O/c1-3-18(30)28-16-8-13(2)21-19(15-9-14-6-4-5-7-17(14)25-10-15)20-22(24)26-12-27-23(20)29(21)11-16/h3-10,12,16H,1,11H2,2H3,(H,28,30)(H2,24,26,27)/t16-/m0/s1" X9H InChIKey InChI 1.06 MKCYPWYURWOKST-INIZCTEOSA-N X9H SMILES_CANONICAL CACTVS 3.385 "CC1=C[C@@H](Cn2c3ncnc(N)c3c(c4cnc5ccccc5c4)c12)NC(=O)C=C" X9H SMILES CACTVS 3.385 "CC1=C[CH](Cn2c3ncnc(N)c3c(c4cnc5ccccc5c4)c12)NC(=O)C=C" X9H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C[C@@H](Cn2c1c(c3c2ncnc3N)c4cc5ccccc5nc4)NC(=O)C=C" X9H SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CC(Cn2c1c(c3c2ncnc3N)c4cc5ccccc5nc4)NC(=O)C=C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X9H "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(5P,8S,10R)-4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide" X9H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(8~{S})-4-azanyl-6-methyl-5-quinolin-3-yl-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X9H "Create component" 2022-11-07 RCSB X9H "Initial release" 2023-11-08 RCSB #