data_XB2 # _chem_comp.id XB2 _chem_comp.name "6-[[(1~{S})-1-phenylethyl]amino]-3-propan-2-yl-1~{H}-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H19 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-26 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XB2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QYQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XB2 O01 O1 O 0 1 N N N N N N -9.142 5.597 17.448 2.539 -2.298 -0.217 O01 XB2 1 XB2 C02 C1 C 0 1 N N N N N N -9.714 5.143 18.729 2.113 -1.166 -0.087 C02 XB2 2 XB2 N03 N1 N 0 1 N N N N N N -10.960 4.713 18.779 2.969 -0.128 -0.118 N03 XB2 3 XB2 C04 C2 C 0 1 N N N N N N -11.794 4.608 17.545 4.401 -0.373 -0.309 C04 XB2 4 XB2 C05 C3 C 0 1 N N N N N N -11.944 5.918 16.730 4.875 0.338 -1.578 C05 XB2 5 XB2 C06 C4 C 0 1 N N N N N N -11.239 3.448 16.695 5.175 0.165 0.896 C06 XB2 6 XB2 C07 C5 C 0 1 N N N N N N -11.504 4.299 19.952 2.520 1.134 0.024 C07 XB2 7 XB2 C08 C6 C 0 1 N N N N N N -10.741 4.364 21.184 1.147 1.365 0.206 C08 XB2 8 XB2 C09 C7 C 0 1 N N N N N N -9.459 4.847 21.089 0.292 0.299 0.236 C09 XB2 9 XB2 N10 N2 N 0 1 N N N N N N -8.552 4.893 22.237 -1.053 0.496 0.412 N10 XB2 10 XB2 C11 C8 C 0 1 N N S N N N -9.042 4.680 23.589 -1.964 -0.651 0.443 C11 XB2 11 XB2 C12 C9 C 0 1 Y N N N N N -9.642 5.963 24.153 -3.345 -0.208 0.034 C12 XB2 12 XB2 C13 C10 C 0 1 Y N N N N N -10.641 5.873 25.214 -4.117 -1.015 -0.780 C13 XB2 13 XB2 C14 C11 C 0 1 Y N N N N N -11.155 7.023 25.767 -5.384 -0.608 -1.155 C14 XB2 14 XB2 C15 C12 C 0 1 Y N N N N N -10.740 8.286 25.299 -5.878 0.606 -0.715 C15 XB2 15 XB2 C16 C13 C 0 1 Y N N N N N -9.737 8.371 24.243 -5.106 1.413 0.100 C16 XB2 16 XB2 C17 C14 C 0 1 Y N N N N N -9.230 7.226 23.676 -3.841 1.003 0.479 C17 XB2 17 XB2 C18 C15 C 0 1 N N N N N N -7.912 4.201 24.457 -2.011 -1.228 1.859 C18 XB2 18 XB2 N19 N3 N 0 1 N N N N N N -8.964 5.250 19.859 0.793 -0.971 0.082 N19 XB2 19 XB2 O20 O2 O 0 1 N N N N N N -12.822 3.837 19.948 3.301 2.070 -0.005 O20 XB2 20 XB2 H1 H1 H 0 1 N N N N N N -12.807 4.315 17.859 4.577 -1.444 -0.405 H1 XB2 21 XB2 H2 H2 H 0 1 N N N N N N -12.342 6.711 17.380 4.699 1.409 -1.482 H2 XB2 22 XB2 H3 H3 H 0 1 N N N N N N -10.961 6.222 16.340 5.940 0.156 -1.720 H3 XB2 23 XB2 H4 H4 H 0 1 N N N N N N -12.635 5.750 15.891 4.323 -0.045 -2.437 H4 XB2 24 XB2 H5 H5 H 0 1 N N N N N N -11.152 2.545 17.318 4.837 -0.341 1.801 H5 XB2 25 XB2 H6 H6 H 0 1 N N N N N N -11.921 3.250 15.855 6.240 -0.017 0.754 H6 XB2 26 XB2 H7 H7 H 0 1 N N N N N N -10.247 3.721 16.305 4.999 1.236 0.992 H7 XB2 27 XB2 H8 H8 H 0 1 N N N N N N -11.160 4.049 22.128 0.772 2.372 0.322 H8 XB2 28 XB2 H9 H9 H 0 1 N N N N N N -7.853 4.196 22.075 -1.402 1.395 0.517 H9 XB2 29 XB2 H10 H10 H 0 1 N N N N N N -9.826 3.908 23.574 -1.608 -1.416 -0.249 H10 XB2 30 XB2 H11 H11 H 0 1 N N N N N N -10.975 4.907 25.563 -3.731 -1.963 -1.124 H11 XB2 31 XB2 H12 H12 H 0 1 N N N N N N -11.881 6.958 26.564 -5.988 -1.238 -1.791 H12 XB2 32 XB2 H13 H13 H 0 1 N N N N N N -11.162 9.186 25.720 -6.868 0.924 -1.008 H13 XB2 33 XB2 H14 H14 H 0 1 N N N N N N -9.392 9.337 23.906 -5.492 2.361 0.443 H14 XB2 34 XB2 H15 H15 H 0 1 N N N N N N -8.518 7.293 22.867 -3.240 1.632 1.119 H15 XB2 35 XB2 H16 H16 H 0 1 N N N N N N -8.279 4.039 25.481 -2.366 -0.463 2.551 H16 XB2 36 XB2 H17 H17 H 0 1 N N N N N N -7.516 3.256 24.055 -2.688 -2.081 1.882 H17 XB2 37 XB2 H18 H18 H 0 1 N N N N N N -7.113 4.957 24.469 -1.012 -1.548 2.155 H18 XB2 38 XB2 H19 H19 H 0 1 N N N N N N -8.039 5.626 19.801 0.191 -1.732 0.097 H19 XB2 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XB2 C06 C04 SING N N 1 XB2 C05 C04 SING N N 2 XB2 O01 C02 DOUB N N 3 XB2 C04 N03 SING N N 4 XB2 C02 N03 SING N N 5 XB2 C02 N19 SING N N 6 XB2 N03 C07 SING N N 7 XB2 N19 C09 SING N N 8 XB2 O20 C07 DOUB N N 9 XB2 C07 C08 SING N N 10 XB2 C09 C08 DOUB N N 11 XB2 C09 N10 SING N N 12 XB2 N10 C11 SING N N 13 XB2 C11 C12 SING N N 14 XB2 C11 C18 SING N N 15 XB2 C17 C12 DOUB Y N 16 XB2 C17 C16 SING Y N 17 XB2 C12 C13 SING Y N 18 XB2 C16 C15 DOUB Y N 19 XB2 C13 C14 DOUB Y N 20 XB2 C15 C14 SING Y N 21 XB2 C04 H1 SING N N 22 XB2 C05 H2 SING N N 23 XB2 C05 H3 SING N N 24 XB2 C05 H4 SING N N 25 XB2 C06 H5 SING N N 26 XB2 C06 H6 SING N N 27 XB2 C06 H7 SING N N 28 XB2 C08 H8 SING N N 29 XB2 N10 H9 SING N N 30 XB2 C11 H10 SING N N 31 XB2 C13 H11 SING N N 32 XB2 C14 H12 SING N N 33 XB2 C15 H13 SING N N 34 XB2 C16 H14 SING N N 35 XB2 C17 H15 SING N N 36 XB2 C18 H16 SING N N 37 XB2 C18 H17 SING N N 38 XB2 C18 H18 SING N N 39 XB2 N19 H19 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XB2 InChI InChI 1.06 "InChI=1S/C15H19N3O2/c1-10(2)18-14(19)9-13(17-15(18)20)16-11(3)12-7-5-4-6-8-12/h4-11,16H,1-3H3,(H,17,20)/t11-/m0/s1" XB2 InChIKey InChI 1.06 RLCLASQCAPXVLM-NSHDSACASA-N XB2 SMILES_CANONICAL CACTVS 3.385 "CC(C)N1C(=O)NC(=CC1=O)N[C@@H](C)c2ccccc2" XB2 SMILES CACTVS 3.385 "CC(C)N1C(=O)NC(=CC1=O)N[CH](C)c2ccccc2" XB2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccccc1)NC2=CC(=O)N(C(=O)N2)C(C)C" XB2 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)N1C(=O)C=C(NC1=O)NC(C)c2ccccc2" # _pdbx_chem_comp_identifier.comp_id XB2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[[(1~{S})-1-phenylethyl]amino]-3-propan-2-yl-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XB2 "Create component" 2023-10-26 PDBE XB2 "Initial release" 2023-12-13 RCSB #