data_XC9 # _chem_comp.id XC9 _chem_comp.name "1-[6-[azanylidene-[[azanylidene-[[(4-chlorophenyl)amino]methyl]-$l^{4}-azanyl]methyl]-$l^{4}-azanyl]hexyl]-3-[~{N}-(4-chlorophenyl)carbamimidoyl]guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H30 Cl2 N10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-11 _chem_comp.pdbx_modified_date 2023-02-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XC9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F4A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XC9 CL2 CL1 CL 0 0 N N N 21.613 -15.098 32.193 -12.080 3.009 -0.142 CL2 XC9 1 XC9 C10 C1 C 0 1 N N N 18.488 -7.628 38.169 0.214 -1.907 -0.072 C10 XC9 2 XC9 C11 C2 C 0 1 N N N 17.305 -8.082 37.319 -1.134 -2.620 0.045 C11 XC9 3 XC9 C12 C3 C 0 1 N N N 17.463 -9.491 36.763 -2.264 -1.591 -0.035 C12 XC9 4 XC9 N6 N1 N 0 1 N N N 17.030 -10.520 37.758 -3.555 -2.274 0.077 N6 XC9 5 XC9 C13 C4 C 0 1 N N N 17.884 -11.409 38.262 -4.722 -1.549 0.032 C13 XC9 6 XC9 N7 N2 N 0 1 N N N 17.579 -12.066 39.394 -4.680 -0.255 -0.110 N7 XC9 7 XC9 N8 N3 N 0 1 N N N 19.015 -11.740 37.639 -5.938 -2.192 0.138 N8 XC9 8 XC9 C14 C5 C 0 1 N N N 20.273 -11.681 38.062 -7.102 -1.457 0.225 C14 XC9 9 XC9 N9 N4 N 0 1 N N N 20.625 -11.197 39.260 -8.241 -2.060 0.415 N9 XC9 10 XC9 N10 N5 N 0 1 N N N 21.304 -12.055 37.263 -7.060 -0.086 0.112 N10 XC9 11 XC9 C15 C6 C 0 1 Y N N 21.324 -12.793 36.049 -8.250 0.648 0.051 C15 XC9 12 XC9 C16 C7 C 0 1 Y N N 22.556 -13.250 35.594 -8.339 1.881 0.683 C16 XC9 13 XC9 C17 C8 C 0 1 Y N N 22.652 -13.960 34.410 -9.514 2.604 0.622 C17 XC9 14 XC9 C18 C9 C 0 1 Y N N 21.513 -14.204 33.680 -10.603 2.099 -0.068 C18 XC9 15 XC9 C19 C10 C 0 1 Y N N 20.284 -13.753 34.101 -10.517 0.870 -0.698 C19 XC9 16 XC9 C20 C11 C 0 1 Y N N 20.189 -13.042 35.284 -9.342 0.146 -0.645 C20 XC9 17 XC9 H1 H1 H 0 1 N N N 18.381 -6.953 39.031 0.267 -1.383 -1.027 H1 XC9 18 XC9 H2 H2 H 0 1 N N N 19.407 -8.222 38.280 0.318 -1.190 0.742 H2 XC9 19 XC9 H4 H4 H 0 1 N N N 17.194 -7.385 36.475 -1.238 -3.337 -0.770 H4 XC9 20 XC9 H5 H5 H 0 1 N N N 16.398 -8.052 37.940 -1.186 -3.144 0.999 H5 XC9 21 XC9 H6 H6 H 0 1 N N N 16.849 -9.589 35.856 -2.160 -0.874 0.780 H6 XC9 22 XC9 H7 H7 H 0 1 N N N 18.520 -9.660 36.510 -2.212 -1.067 -0.989 H7 XC9 23 XC9 H8 H8 H 0 1 N N N 16.075 -10.541 38.053 -3.586 -3.238 0.183 H8 XC9 24 XC9 H9 H9 H 0 1 N N N 16.686 -11.796 39.755 -3.825 0.197 -0.184 H9 XC9 25 XC9 H10 H10 H 0 1 N N N 18.898 -12.087 36.708 -5.975 -3.162 0.150 H10 XC9 26 XC9 H11 H11 H 0 1 N N N 19.833 -10.890 39.788 -8.263 -3.018 0.568 H11 XC9 27 XC9 H12 H12 H 0 1 N N N 22.204 -11.761 37.584 -6.206 0.371 0.073 H12 XC9 28 XC9 H13 H13 H 0 1 N N N 23.447 -13.049 36.170 -7.490 2.276 1.221 H13 XC9 29 XC9 H14 H14 H 0 1 N N N 23.610 -14.318 34.064 -9.584 3.563 1.113 H14 XC9 30 XC9 H15 H15 H 0 1 N N N 19.400 -13.952 33.513 -11.368 0.478 -1.235 H15 XC9 31 XC9 H16 H16 H 0 1 N N N 19.228 -12.678 35.616 -9.275 -0.813 -1.137 H16 XC9 32 XC9 C1 C12 C 0 1 N N N ? ? ? 1.344 -2.936 0.007 C1 XC9 33 XC9 C2 C13 C 0 1 N N N ? ? ? 2.693 -2.223 -0.110 C2 XC9 34 XC9 C3 C14 C 0 1 N N N ? ? ? 3.822 -3.251 -0.030 C3 XC9 35 XC9 N1 N6 N 0 1 N N N ? ? ? 5.113 -2.569 -0.142 N1 XC9 36 XC9 C4 C15 C 0 1 N N N ? ? ? 6.280 -3.293 -0.097 C4 XC9 37 XC9 N2 N7 N 0 1 N N N ? ? ? 7.496 -2.642 -0.054 N2 XC9 38 XC9 C5 C16 C 0 1 N N N ? ? ? 7.538 -1.269 0.073 C5 XC9 39 XC9 N3 N8 N 0 1 N N N ? ? ? 8.739 -0.605 -0.032 N3 XC9 40 XC9 C6 C17 C 0 1 Y N N ? ? ? 8.768 0.794 -0.031 C6 XC9 41 XC9 C7 C18 C 0 1 Y N N ? ? ? 9.734 1.469 0.703 C7 XC9 42 XC9 C8 C19 C 0 1 Y N N ? ? ? 9.760 2.850 0.702 C8 XC9 43 XC9 C9 C20 C 0 1 Y N N ? ? ? 8.825 3.560 -0.030 C9 XC9 44 XC9 C21 C21 C 0 1 Y N N ? ? ? 7.861 2.890 -0.762 C21 XC9 45 XC9 C22 C22 C 0 1 Y N N ? ? ? 7.833 1.509 -0.769 C22 XC9 46 XC9 CL1 CL2 CL 0 0 N N N ? ? ? 8.861 5.296 -0.029 CL1 XC9 47 XC9 H3 H3 H 0 1 N N N ? ? ? 1.292 -3.460 0.961 H3 XC9 48 XC9 H17 H17 H 0 1 N N N ? ? ? 1.240 -3.653 -0.807 H17 XC9 49 XC9 H18 H18 H 0 1 N N N ? ? ? 2.745 -1.699 -1.064 H18 XC9 50 XC9 H19 H19 H 0 1 N N N ? ? ? 2.796 -1.506 0.705 H19 XC9 51 XC9 H20 H20 H 0 1 N N N ? ? ? 3.770 -3.776 0.924 H20 XC9 52 XC9 H21 H21 H 0 1 N N N ? ? ? 3.718 -3.968 -0.845 H21 XC9 53 XC9 H26 H26 H 0 1 N N N ? ? ? 9.566 -1.107 -0.106 H26 XC9 54 XC9 H27 H27 H 0 1 N N N ? ? ? 10.464 0.915 1.275 H27 XC9 55 XC9 H28 H28 H 0 1 N N N ? ? ? 10.511 3.376 1.273 H28 XC9 56 XC9 H29 H29 H 0 1 N N N ? ? ? 7.131 3.447 -1.332 H29 XC9 57 XC9 H30 H30 H 0 1 N N N ? ? ? 7.081 0.986 -1.340 H30 XC9 58 XC9 N4 N9 N 0 1 N N N ? ? ? 6.239 -4.595 -0.096 N4 XC9 59 XC9 N5 N10 N 0 1 N N N ? ? ? 6.442 -0.601 0.291 N5 XC9 60 XC9 H31 H31 H 0 1 N N N ? ? ? 5.145 -1.605 -0.248 H31 XC9 61 XC9 H22 H22 H 0 1 N N N ? ? ? 8.320 -3.150 -0.112 H22 XC9 62 XC9 H23 H23 H 0 1 N N N ? ? ? 7.056 -5.107 0.010 H23 XC9 63 XC9 H24 H24 H 0 1 N N N ? ? ? 6.468 0.367 0.355 H24 XC9 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XC9 CL2 C18 SING N N 1 XC9 C18 C19 DOUB Y N 2 XC9 C18 C17 SING Y N 3 XC9 C19 C20 SING Y N 4 XC9 C17 C16 DOUB Y N 5 XC9 C20 C15 DOUB Y N 6 XC9 C16 C15 SING Y N 7 XC9 C15 N10 SING N N 8 XC9 C12 C11 SING N N 9 XC9 C12 N6 SING N N 10 XC9 N10 C14 SING N N 11 XC9 C11 C10 SING N N 12 XC9 N8 C14 SING N N 13 XC9 N8 C13 SING N N 14 XC9 N6 C13 SING N N 15 XC9 C14 N9 DOUB N N 16 XC9 C13 N7 DOUB N N 17 XC9 C10 H1 SING N N 18 XC9 C10 H2 SING N N 19 XC9 C11 H4 SING N N 20 XC9 C11 H5 SING N N 21 XC9 C12 H6 SING N N 22 XC9 C12 H7 SING N N 23 XC9 N6 H8 SING N N 24 XC9 N7 H9 SING N N 25 XC9 N8 H10 SING N N 26 XC9 N9 H11 SING N N 27 XC9 N10 H12 SING N N 28 XC9 C16 H13 SING N N 29 XC9 C17 H14 SING N N 30 XC9 C19 H15 SING N N 31 XC9 C20 H16 SING N N 32 XC9 C10 C1 SING N N 33 XC9 C1 C2 SING N N 34 XC9 C2 C3 SING N N 35 XC9 C3 N1 SING N N 36 XC9 N1 C4 SING N N 37 XC9 C4 N2 SING N N 38 XC9 N2 C5 SING N N 39 XC9 C5 N3 SING N N 40 XC9 N3 C6 SING N N 41 XC9 C6 C7 SING Y N 42 XC9 C7 C8 DOUB Y N 43 XC9 C8 C9 SING Y N 44 XC9 C9 C21 DOUB Y N 45 XC9 C21 C22 SING Y N 46 XC9 C22 C6 DOUB Y N 47 XC9 C9 CL1 SING N N 48 XC9 C1 H3 SING N N 49 XC9 C1 H17 SING N N 50 XC9 C2 H18 SING N N 51 XC9 C2 H19 SING N N 52 XC9 C3 H20 SING N N 53 XC9 C3 H21 SING N N 54 XC9 N3 H26 SING N N 55 XC9 C7 H27 SING N N 56 XC9 C8 H28 SING N N 57 XC9 C21 H29 SING N N 58 XC9 C22 H30 SING N N 59 XC9 C4 N4 DOUB N N 60 XC9 C5 N5 DOUB N N 61 XC9 N1 H31 SING N N 62 XC9 N2 H22 SING N N 63 XC9 N4 H23 SING N N 64 XC9 N5 H24 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XC9 SMILES ACDLabs 12.01 "Clc1ccc(NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(Cl)cc2)cc1" XC9 InChI InChI 1.06 "InChI=1S/C22H30Cl2N10/c23-15-5-9-17(10-6-15)31-21(27)33-19(25)29-13-3-1-2-4-14-30-20(26)34-22(28)32-18-11-7-16(24)8-12-18/h5-12H,1-4,13-14H2,(H5,25,27,29,31,33)(H5,26,28,30,32,34)" XC9 InChIKey InChI 1.06 GHXZTYHSJHQHIJ-UHFFFAOYSA-N XC9 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(Cl)cc2)cc1" XC9 SMILES CACTVS 3.385 "Clc1ccc(NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(Cl)cc2)cc1" XC9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\NCCCCCCNC(=N)NC(=N)Nc1ccc(cc1)Cl)/N/C(=N\[H])/Nc2ccc(cc2)Cl" XC9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC(=N)NC(=N)NCCCCCCNC(=N)NC(=N)Nc2ccc(cc2)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XC9 "SYSTEMATIC NAME" ACDLabs 12.01 ;N,N''''-hexane-1,6-diylbis[N'-(4-chlorophenyl)triimidodicarbonic diamide] ; XC9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(4-chlorophenyl)-3-[~{N}-[6-[[~{N}-[~{N}-(4-chlorophenyl)carbamimidoyl]carbamimidoyl]amino]hexyl]carbamimidoyl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XC9 "Create component" 2022-11-11 RCSB XC9 "Initial release" 2023-02-08 RCSB #