data_XE1 # _chem_comp.id XE1 _chem_comp.name "N,N'-(dihydroxy-lambda~5~-phosphanediyl)bis(phosphoramidic acid)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "H9 N2 O8 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-14 _chem_comp.pdbx_modified_date 2021-03-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.001 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XE1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L1A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XE1 N3A N1 N 0 1 N N N 6.842 -8.321 -19.852 1.567 0.187 -1.113 N3A XE1 1 XE1 N3B N2 N 0 1 N N N 6.824 -5.751 -20.860 -1.568 0.192 -1.112 N3B XE1 2 XE1 O1A O1 O 0 1 N N N 4.304 -8.275 -19.707 2.817 0.878 1.165 O1A XE1 3 XE1 O1B O2 O 0 1 N N N 6.180 -6.355 -18.092 -0.000 -0.559 1.403 O1B XE1 4 XE1 O1G O3 O 0 1 N N N 4.879 -5.971 -22.535 -2.822 -1.509 0.377 O1G XE1 5 XE1 O2A O4 O 0 1 N N N 5.255 -8.767 -21.864 2.818 -1.518 0.374 O2A XE1 6 XE1 O2B O5 O 0 1 N N N 8.542 -6.359 -19.050 0.003 1.580 0.245 O2B XE1 7 XE1 O2G O6 O 0 1 N N N 4.174 -5.361 -20.292 -2.813 0.887 1.168 O2G XE1 8 XE1 O3G O7 O 0 1 N N N 5.430 -3.761 -21.662 -4.248 0.134 -0.902 O3G XE1 9 XE1 O4A O8 O 0 1 N N N 5.406 -10.384 -20.147 4.248 0.121 -0.906 O4A XE1 10 XE1 PA P1 P 0 1 N N N 5.364 -8.962 -20.404 2.875 -0.117 -0.099 PA XE1 11 XE1 PB P2 P 0 1 N N N 6.996 -6.678 -19.456 -0.000 -0.069 -0.245 PB XE1 12 XE1 PG P3 P 0 1 N N N 5.252 -5.186 -21.339 -2.876 -0.108 -0.096 PG XE1 13 XE1 H3A1 H1 H 0 0 N N N 7.084 -8.835 -19.029 1.619 1.117 -1.500 H3A1 XE1 14 XE1 H3B1 H2 H 0 0 N N N 7.175 -6.304 -21.616 -1.619 -0.375 -1.945 H3B1 XE1 15 XE1 H1 H3 H 0 1 N N N 3.746 -7.832 -20.336 2.851 1.816 0.930 H1 XE1 16 XE1 H1B1 H4 H 0 0 N N N 6.416 -6.988 -17.424 -0.002 -1.518 1.528 H1B1 XE1 17 XE1 H2B1 H5 H 0 0 N N N 8.766 -6.833 -18.257 0.003 2.209 -0.489 H2B1 XE1 18 XE1 H2 H6 H 0 1 N N N 3.495 -5.934 -20.628 -2.844 1.825 0.932 H2 XE1 19 XE1 H3 H7 H 0 1 N N N 5.268 -3.623 -22.588 -5.045 -0.020 -0.377 H3 XE1 20 XE1 H4 H8 H 0 1 N N N 5.354 -10.857 -20.969 5.045 -0.037 -0.382 H4 XE1 21 XE1 HB1 H9 H 0 1 N N N 5.977 -6.023 -19.533 -0.003 -1.477 -0.664 HB1 XE1 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XE1 O1G PG DOUB N N 1 XE1 O2A PA DOUB N N 2 XE1 O3G PG SING N N 3 XE1 PG N3B SING N N 4 XE1 PG O2G SING N N 5 XE1 N3B PB SING N N 6 XE1 PA O4A SING N N 7 XE1 PA N3A SING N N 8 XE1 PA O1A SING N N 9 XE1 N3A PB SING N N 10 XE1 PB O2B SING N N 11 XE1 PB O1B SING N N 12 XE1 N3A H3A1 SING N N 13 XE1 N3B H3B1 SING N N 14 XE1 O1A H1 SING N N 15 XE1 O1B H1B1 SING N N 16 XE1 O2B H2B1 SING N N 17 XE1 O2G H2 SING N N 18 XE1 O3G H3 SING N N 19 XE1 O4A H4 SING N N 20 XE1 PB HB1 SING N N 21 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XE1 SMILES ACDLabs 12.01 "N(P(NP(=O)(O)O)(O)O)P(O)(=O)O" XE1 InChI InChI 1.03 "InChI=1S/H9N2O8P3/c3-11(4,1-12(5,6)7)2-13(8,9)10/h3-4,11H,(H3,1,5,6,7)(H3,2,8,9,10)" XE1 InChIKey InChI 1.03 ODGUPQBDYZTXCT-UHFFFAOYSA-N XE1 SMILES_CANONICAL CACTVS 3.385 "O[PH](O)(N[P](O)(O)=O)N[P](O)(O)=O" XE1 SMILES CACTVS 3.385 "O[PH](O)(N[P](O)(O)=O)N[P](O)(O)=O" XE1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "N(P(NP(=O)(O)O)(O)O)P(=O)(O)O" XE1 SMILES "OpenEye OEToolkits" 2.0.7 "N(P(NP(=O)(O)O)(O)O)P(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XE1 "SYSTEMATIC NAME" ACDLabs 12.01 "N,N'-(dihydroxy-lambda~5~-phosphanediyl)bis(phosphoramidic acid)" XE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[bis(oxidanyl)-(phosphonoamino)-$l^{5}-phosphanyl]amino]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XE1 "Create component" 2020-12-14 RCSB XE1 "Initial release" 2021-03-17 RCSB ##