data_XIF # _chem_comp.id XIF _chem_comp.name "PIPERIDINE-3,4-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "XYLOSE-DERIVED ISOFAGOMINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-08-17 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 117.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XIF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FH8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XIF N1 N1 N 0 1 N N N -65.007 20.466 54.473 1.876 -0.615 -0.321 N1 XIF 1 XIF C2 C2 C 0 1 N N N -65.952 19.943 55.511 0.723 -1.403 0.131 C2 XIF 2 XIF C3 C3 C 0 1 N N R -65.079 19.582 56.760 -0.571 -0.711 -0.303 C3 XIF 3 XIF O3 O3 O 0 1 N N N -65.880 19.061 57.814 -1.694 -1.467 0.155 O3 XIF 4 XIF C4 C4 C 0 1 N N R -63.976 18.583 56.335 -0.621 0.695 0.301 C4 XIF 5 XIF O4 O4 O 0 1 N N N -63.206 18.275 57.489 -1.799 1.366 -0.148 O4 XIF 6 XIF C5 C5 C 0 1 N N N -63.118 19.178 55.202 0.616 1.478 -0.147 C5 XIF 7 XIF C6 C6 C 0 1 N N N -64.045 19.472 54.061 1.876 0.723 0.283 C6 XIF 8 XIF HN1 HN1 H 0 1 N N N -65.534 20.755 53.674 2.741 -1.098 -0.130 HN1 XIF 9 XIF H21 H21 H 0 1 N N N -66.693 20.713 55.774 0.768 -2.399 -0.309 H21 XIF 10 XIF H22 H22 H 0 1 N N N -66.470 19.048 55.137 0.743 -1.485 1.218 H22 XIF 11 XIF H3 H3 H 0 1 N N N -64.585 20.505 57.098 -0.599 -0.642 -1.391 H3 XIF 12 XIF HO3 HO3 H 0 1 N N N -65.328 18.851 58.558 -1.725 -2.371 -0.187 HO3 XIF 13 XIF H4 H4 H 0 1 N N N -64.464 17.673 55.957 -0.633 0.623 1.389 H4 XIF 14 XIF HO4 HO4 H 0 1 N N N -62.519 17.661 57.257 -1.896 2.265 0.197 HO4 XIF 15 XIF H51 H51 H 0 1 N N N -62.632 20.104 55.542 0.608 1.583 -1.232 H51 XIF 16 XIF H52 H52 H 0 1 N N N -62.351 18.455 54.889 0.609 2.466 0.314 H52 XIF 17 XIF H61 H61 H 0 1 N N N -64.570 18.551 53.768 1.891 0.631 1.369 H61 XIF 18 XIF H62 H62 H 0 1 N N N -63.467 19.852 53.206 2.759 1.271 -0.047 H62 XIF 19 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XIF N1 C2 SING N N 1 XIF N1 C6 SING N N 2 XIF N1 HN1 SING N N 3 XIF C2 C3 SING N N 4 XIF C2 H21 SING N N 5 XIF C2 H22 SING N N 6 XIF C3 O3 SING N N 7 XIF C3 C4 SING N N 8 XIF C3 H3 SING N N 9 XIF O3 HO3 SING N N 10 XIF C4 O4 SING N N 11 XIF C4 C5 SING N N 12 XIF C4 H4 SING N N 13 XIF O4 HO4 SING N N 14 XIF C5 C6 SING N N 15 XIF C5 H51 SING N N 16 XIF C5 H52 SING N N 17 XIF C6 H61 SING N N 18 XIF C6 H62 SING N N 19 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XIF SMILES ACDLabs 12.01 OC1CCNCC1O XIF InChI InChI 1.03 "InChI=1S/C5H11NO2/c7-4-1-2-6-3-5(4)8/h4-8H,1-3H2/t4-,5-/m1/s1" XIF InChIKey InChI 1.03 IZXWMVPZODQBRB-RFZPGFLSSA-N XIF SMILES_CANONICAL CACTVS 3.370 O[C@@H]1CCNC[C@H]1O XIF SMILES CACTVS 3.370 O[CH]1CCNC[CH]1O XIF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1CNC[C@H]([C@@H]1O)O" XIF SMILES "OpenEye OEToolkits" 1.7.6 "C1CNCC(C1O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XIF "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4R)-piperidine-3,4-diol" XIF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3R,4R)-piperidine-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XIF "Create component" 2000-08-17 RCSB XIF "Modify descriptor" 2011-06-04 RCSB XIF "Modify linking type" 2012-12-21 RCSB XIF "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XIF _pdbx_chem_comp_synonyms.name "XYLOSE-DERIVED ISOFAGOMINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##