data_XJD # _chem_comp.id XJD _chem_comp.name "(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl tridecanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H50 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-17 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.640 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L2H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJD C11 C1 C 0 1 N N N 150.064 144.187 93.638 -4.860 2.998 -2.360 C11 XJD 1 XJD C12 C2 C 0 1 N N N 150.007 145.414 92.728 -5.555 2.085 -3.372 C12 XJD 2 XJD C13 C3 C 0 1 N N N 152.563 144.997 100.296 0.818 0.192 1.714 C13 XJD 3 XJD C14 C4 C 0 1 N N N 152.639 145.113 101.816 1.851 -0.437 0.815 C14 XJD 4 XJD C15 C5 C 0 1 N N N 152.881 143.761 102.484 3.244 0.046 1.223 C15 XJD 5 XJD C16 C6 C 0 1 N N N 151.989 143.573 103.706 4.293 -0.592 0.310 C16 XJD 6 XJD C17 C7 C 0 1 N N N 152.127 142.204 104.365 5.686 -0.109 0.718 C17 XJD 7 XJD C18 C8 C 0 1 N N N 150.764 141.570 104.626 6.735 -0.748 -0.194 C18 XJD 8 XJD C19 C9 C 0 1 N N N 149.893 142.365 105.596 8.128 -0.265 0.214 C19 XJD 9 XJD C20 C10 C 0 1 N N N 148.407 142.327 105.238 9.177 -0.904 -0.699 C20 XJD 10 XJD C21 C11 C 0 1 N N N 147.707 141.060 105.729 10.571 -0.421 -0.291 C21 XJD 11 XJD C22 C12 C 0 1 N N N 146.358 141.293 106.404 11.619 -1.059 -1.203 C22 XJD 12 XJD C23 C13 C 0 1 N N N 146.296 140.694 107.806 13.012 -0.576 -0.795 C23 XJD 13 XJD C25 C14 C 0 1 N N N 145.401 141.210 110.142 15.455 -0.732 -1.300 C25 XJD 14 XJD N N1 N 0 1 N N N 149.603 145.043 91.381 -6.532 1.236 -2.676 N XJD 15 XJD O O1 O 0 1 N N N 147.166 146.650 100.090 -4.810 -1.794 2.400 O XJD 16 XJD C1 C15 C 0 1 N N N 147.743 146.124 107.717 -10.434 -4.561 -1.650 C1 XJD 17 XJD C10 C16 C 0 1 N N N 151.803 145.694 97.437 -1.870 1.890 1.847 C10 XJD 18 XJD C2 C17 C 0 1 N N N 147.337 146.949 106.502 -9.236 -3.649 -1.923 C2 XJD 19 XJD C24 C18 C 0 1 N N N 145.167 141.291 108.639 14.061 -1.215 -1.708 C24 XJD 20 XJD C3 C19 C 0 1 N N N 147.792 146.313 105.196 -8.436 -3.458 -0.633 C3 XJD 21 XJD C4 C20 C 0 1 N N N 148.074 147.347 104.115 -7.238 -2.546 -0.907 C4 XJD 22 XJD C5 C21 C 0 1 N N N 147.693 146.879 102.718 -6.437 -2.355 0.383 C5 XJD 23 XJD C6 C22 C 0 1 N N N 148.799 147.122 101.705 -5.240 -1.443 0.110 C6 XJD 24 XJD C7 C23 C 0 1 N N N 148.282 146.977 100.281 -4.451 -1.255 1.380 C7 XJD 25 XJD C8 C24 C 0 1 N N N 149.564 146.057 98.555 -2.640 -0.351 2.639 C8 XJD 26 XJD C9 C25 C 0 1 N N R 151.077 145.946 98.761 -1.422 0.554 2.442 C9 XJD 27 XJD O1 O2 O 0 1 N N N 149.125 147.218 99.198 -3.350 -0.487 1.379 O1 XJD 28 XJD O2 O3 O 0 1 N N N 151.852 144.318 97.192 -2.603 1.653 0.643 O2 XJD 29 XJD O3 O4 O 0 1 N N N 151.073 142.208 95.963 -4.100 3.685 0.593 O3 XJD 30 XJD O4 O5 O 0 1 N N N 149.406 143.962 96.513 -2.037 3.734 -0.861 O4 XJD 31 XJD O5 O6 O 0 1 N N N 151.049 144.375 94.612 -4.093 2.205 -1.452 O5 XJD 32 XJD O6 O7 O 0 1 N N N 151.331 144.899 99.648 -0.483 -0.088 1.540 O6 XJD 33 XJD O7 O8 O 0 1 N N N 153.556 144.991 99.658 1.161 0.950 2.591 O7 XJD 34 XJD P P1 P 0 1 N N N 150.821 143.685 96.083 -3.227 2.838 -0.251 P XJD 35 XJD H1 H1 H 0 1 N N N 149.088 144.046 94.126 -4.201 3.688 -2.886 H1 XJD 36 XJD H2 H2 H 0 1 N N N 150.306 143.297 93.039 -5.609 3.563 -1.806 H2 XJD 37 XJD H3 H3 H 0 1 N N N 151.002 145.881 92.690 -6.068 2.693 -4.117 H3 XJD 38 XJD H4 H4 H 0 1 N N N 149.281 146.132 93.137 -4.813 1.456 -3.864 H4 XJD 39 XJD H5 H5 H 0 1 N N N 153.464 145.791 102.079 1.801 -1.521 0.908 H5 XJD 40 XJD H6 H6 H 0 1 N N N 151.690 145.528 102.188 1.656 -0.151 -0.219 H6 XJD 41 XJD H7 H7 H 0 1 N N N 152.668 142.961 101.760 3.294 1.131 1.130 H7 XJD 42 XJD H8 H8 H 0 1 N N N 153.934 143.701 102.797 3.440 -0.239 2.257 H8 XJD 43 XJD H9 H9 H 0 1 N N N 152.250 144.343 104.447 4.243 -1.677 0.403 H9 XJD 44 XJD H10 H10 H 0 1 N N N 150.942 143.704 103.395 4.098 -0.307 -0.723 H10 XJD 45 XJD H11 H11 H 0 1 N N N 152.707 141.545 103.702 5.736 0.976 0.626 H11 XJD 46 XJD H12 H12 H 0 1 N N N 152.657 142.320 105.322 5.882 -0.395 1.752 H12 XJD 47 XJD H13 H13 H 0 1 N N N 150.230 141.487 103.668 6.685 -1.833 -0.102 H13 XJD 48 XJD H14 H14 H 0 1 N N N 150.923 140.565 105.045 6.540 -0.462 -1.228 H14 XJD 49 XJD H15 H15 H 0 1 N N N 150.021 141.946 106.605 8.178 0.820 0.121 H15 XJD 50 XJD H16 H16 H 0 1 N N N 150.228 143.413 105.589 8.324 -0.551 1.247 H16 XJD 51 XJD H17 H17 H 0 1 N N N 147.914 143.199 105.693 9.127 -1.988 -0.606 H17 XJD 52 XJD H18 H18 H 0 1 N N N 148.309 142.380 104.144 8.982 -0.618 -1.732 H18 XJD 53 XJD H19 H19 H 0 1 N N N 147.547 140.401 104.863 10.620 0.664 -0.383 H19 XJD 54 XJD H20 H20 H 0 1 N N N 148.370 140.562 106.452 10.766 -0.706 0.743 H20 XJD 55 XJD H21 H21 H 0 1 N N N 146.181 142.376 106.475 11.569 -2.144 -1.111 H21 XJD 56 XJD H22 H22 H 0 1 N N N 145.571 140.833 105.788 11.424 -0.774 -2.237 H22 XJD 57 XJD H23 H23 H 0 1 N N N 146.137 139.609 107.721 13.062 0.509 -0.888 H23 XJD 58 XJD H24 H24 H 0 1 N N N 147.252 140.886 108.316 13.208 -0.862 0.238 H24 XJD 59 XJD H25 H25 H 0 1 N N N 144.547 141.659 110.671 15.505 0.353 -1.392 H25 XJD 60 XJD H26 H26 H 0 1 N N N 145.505 140.156 110.441 15.650 -1.018 -0.266 H26 XJD 61 XJD H27 H27 H 0 1 N N N 146.320 141.756 110.400 16.202 -1.187 -1.950 H27 XJD 62 XJD H28 H28 H 0 1 N N N 149.573 145.860 90.805 -7.005 0.624 -3.323 H28 XJD 63 XJD H29 H29 H 0 1 N N N 150.262 144.393 91.003 -6.091 0.710 -1.936 H29 XJD 64 XJD H31 H31 H 0 1 N N N 147.393 146.623 108.633 -10.080 -5.529 -1.295 H31 XJD 65 XJD H32 H32 H 0 1 N N N 147.291 145.124 107.649 -11.071 -4.106 -0.891 H32 XJD 66 XJD H33 H33 H 0 1 N N N 148.839 146.030 107.747 -11.004 -4.697 -2.569 H33 XJD 67 XJD H34 H34 H 0 1 N N N 152.826 146.093 97.497 -2.504 2.412 2.562 H34 XJD 68 XJD H35 H35 H 0 1 N N N 151.262 146.194 96.620 -0.994 2.500 1.624 H35 XJD 69 XJD H36 H36 H 0 1 N N N 147.789 147.948 106.586 -8.599 -4.103 -2.682 H36 XJD 70 XJD H37 H37 H 0 1 N N N 146.241 147.042 106.487 -9.590 -2.681 -2.278 H37 XJD 71 XJD H38 H38 H 0 1 N N N 145.055 142.350 108.362 14.011 -2.300 -1.615 H38 XJD 72 XJD H39 H39 H 0 1 N N N 144.239 140.750 108.403 13.866 -0.929 -2.741 H39 XJD 73 XJD H40 H40 H 0 1 N N N 147.003 145.635 104.839 -9.072 -3.003 0.126 H40 XJD 74 XJD H41 H41 H 0 1 N N N 148.711 145.739 105.384 -8.082 -4.426 -0.279 H41 XJD 75 XJD H42 H42 H 0 1 N N N 149.150 147.577 104.125 -6.601 -3.000 -1.666 H42 XJD 76 XJD H43 H43 H 0 1 N N N 147.502 148.258 104.346 -7.592 -1.578 -1.261 H43 XJD 77 XJD H44 H44 H 0 1 N N N 146.793 147.423 102.396 -7.074 -1.900 1.142 H44 XJD 78 XJD H45 H45 H 0 1 N N N 147.477 145.801 102.753 -6.083 -3.323 0.738 H45 XJD 79 XJD H46 H46 H 0 1 N N N 149.604 146.391 101.871 -4.603 -1.897 -0.649 H46 XJD 80 XJD H47 H47 H 0 1 N N N 149.194 148.140 101.842 -5.594 -0.475 -0.245 H47 XJD 81 XJD H48 H48 H 0 1 N N N 149.337 146.117 97.480 -2.313 -1.333 2.979 H48 XJD 82 XJD H49 H49 H 0 1 N N N 149.063 145.178 98.987 -3.303 0.089 3.384 H49 XJD 83 XJD H50 H50 H 0 1 N N N 151.440 146.896 99.180 -0.940 0.728 3.405 H50 XJD 84 XJD H51 H51 H 0 1 N N N 148.942 143.141 96.626 -1.425 3.242 -1.426 H51 XJD 85 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJD N C12 SING N N 1 XJD C12 C11 SING N N 2 XJD C11 O5 SING N N 3 XJD O5 P SING N N 4 XJD O3 P DOUB N N 5 XJD P O4 SING N N 6 XJD P O2 SING N N 7 XJD O2 C10 SING N N 8 XJD C10 C9 SING N N 9 XJD C8 C9 SING N N 10 XJD C8 O1 SING N N 11 XJD C9 O6 SING N N 12 XJD O1 C7 SING N N 13 XJD O6 C13 SING N N 14 XJD O7 C13 DOUB N N 15 XJD O C7 DOUB N N 16 XJD C7 C6 SING N N 17 XJD C13 C14 SING N N 18 XJD C6 C5 SING N N 19 XJD C14 C15 SING N N 20 XJD C15 C16 SING N N 21 XJD C5 C4 SING N N 22 XJD C16 C17 SING N N 23 XJD C4 C3 SING N N 24 XJD C17 C18 SING N N 25 XJD C18 C19 SING N N 26 XJD C3 C2 SING N N 27 XJD C20 C19 SING N N 28 XJD C20 C21 SING N N 29 XJD C21 C22 SING N N 30 XJD C22 C23 SING N N 31 XJD C2 C1 SING N N 32 XJD C23 C24 SING N N 33 XJD C24 C25 SING N N 34 XJD C11 H1 SING N N 35 XJD C11 H2 SING N N 36 XJD C12 H3 SING N N 37 XJD C12 H4 SING N N 38 XJD C14 H5 SING N N 39 XJD C14 H6 SING N N 40 XJD C15 H7 SING N N 41 XJD C15 H8 SING N N 42 XJD C16 H9 SING N N 43 XJD C16 H10 SING N N 44 XJD C17 H11 SING N N 45 XJD C17 H12 SING N N 46 XJD C18 H13 SING N N 47 XJD C18 H14 SING N N 48 XJD C19 H15 SING N N 49 XJD C19 H16 SING N N 50 XJD C20 H17 SING N N 51 XJD C20 H18 SING N N 52 XJD C21 H19 SING N N 53 XJD C21 H20 SING N N 54 XJD C22 H21 SING N N 55 XJD C22 H22 SING N N 56 XJD C23 H23 SING N N 57 XJD C23 H24 SING N N 58 XJD C25 H25 SING N N 59 XJD C25 H26 SING N N 60 XJD C25 H27 SING N N 61 XJD N H28 SING N N 62 XJD N H29 SING N N 63 XJD C1 H31 SING N N 64 XJD C1 H32 SING N N 65 XJD C1 H33 SING N N 66 XJD C10 H34 SING N N 67 XJD C10 H35 SING N N 68 XJD C2 H36 SING N N 69 XJD C2 H37 SING N N 70 XJD C24 H38 SING N N 71 XJD C24 H39 SING N N 72 XJD C3 H40 SING N N 73 XJD C3 H41 SING N N 74 XJD C4 H42 SING N N 75 XJD C4 H43 SING N N 76 XJD C5 H44 SING N N 77 XJD C5 H45 SING N N 78 XJD C6 H46 SING N N 79 XJD C6 H47 SING N N 80 XJD C8 H48 SING N N 81 XJD C8 H49 SING N N 82 XJD C9 H50 SING N N 83 XJD O4 H51 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJD SMILES ACDLabs 12.01 "C(OP(OCC(COC(=O)CCCCCC)OC(CCCCCCCCCCCC)=O)(=O)O)CN" XJD InChI InChI 1.03 "InChI=1S/C25H50NO8P/c1-3-5-7-9-10-11-12-13-14-16-18-25(28)34-23(22-33-35(29,30)32-20-19-26)21-31-24(27)17-15-8-6-4-2/h23H,3-22,26H2,1-2H3,(H,29,30)/t23-/m1/s1" XJD InChIKey InChI 1.03 DZBORIDLQAEVCV-HSZRJFAPSA-N XJD SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)CO[P](O)(=O)OCCN" XJD SMILES CACTVS 3.385 "CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCC)CO[P](O)(=O)OCCN" XJD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)COP(=O)(O)OCCN" XJD SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCC)COP(=O)(O)OCCN" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XJD "SYSTEMATIC NAME" ACDLabs 12.01 "(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl tridecanoate" XJD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-heptanoyloxy-propan-2-yl] tridecanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJD "Create component" 2020-12-17 RCSB XJD "Initial release" 2021-09-22 RCSB ##